Wall clock time and date at job start Tue Mar 31 2020 03:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00076 * 2 1 4 4 C 1.50701 * 109.47115 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99890 * 270.01677 * 4 3 2 6 6 C 1.38212 * 119.99859 * 179.97438 * 5 4 3 7 7 C 1.38255 * 120.00284 * 0.02562 * 6 5 4 8 8 C 1.38217 * 119.99740 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99801 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46977 * 269.95092 * 9 8 7 11 11 O 1.21285 * 119.99654 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00030 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00008 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47228 * 180.02562 * 13 12 10 15 15 N 1.46496 * 109.47228 * 180.02562 * 14 13 12 16 16 C 1.36936 * 120.00167 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00090 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00267 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99919 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47082 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47007 * 120.00308 * 20 18 16 23 23 H 1.48497 * 109.47246 * 240.00350 * 20 18 16 24 24 C 1.38215 * 119.99815 * 89.99840 * 4 3 2 25 25 H 1.09002 * 109.47070 * 60.00293 * 1 2 3 26 26 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47232 * 300.00065 * 1 2 3 28 28 H 1.08990 * 109.47298 * 59.99415 * 3 2 1 29 29 H 1.09006 * 109.47065 * 299.99406 * 3 2 1 30 30 H 1.08002 * 120.00364 * 0.02562 * 5 4 3 31 31 H 1.08000 * 119.99961 * 180.02562 * 6 5 4 32 32 H 1.07997 * 120.00435 * 180.02562 * 7 6 5 33 33 H 1.08994 * 109.46953 * 29.94909 * 9 8 7 34 34 H 1.08996 * 109.46834 * 149.95334 * 9 8 7 35 35 H 0.96993 * 119.99915 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.47367 * 300.00237 * 13 12 10 37 37 H 1.09004 * 109.47314 * 59.99743 * 13 12 10 38 38 H 1.08997 * 109.47015 * 299.99763 * 14 13 12 39 39 H 1.08999 * 109.47489 * 60.00015 * 14 13 12 40 40 H 0.97001 * 120.00463 * 359.97438 * 15 14 13 41 41 H 0.97005 * 119.99832 * 180.02562 * 19 18 16 42 42 H 1.07995 * 120.00164 * 359.72517 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2011 1.1317 1.1982 6 6 5.5789 1.0221 1.1988 7 6 6.2685 0.9676 0.0018 8 6 5.5802 1.0234 -1.1955 9 6 6.3320 0.9646 -2.5003 10 6 6.6943 2.3614 -2.9346 11 8 6.3740 3.3111 -2.2516 12 7 7.3743 2.5553 -4.0820 13 6 7.7260 3.9132 -4.5045 14 6 8.4882 3.8537 -5.8297 15 7 8.8405 5.2116 -6.2519 16 6 9.5314 5.4086 -7.4177 17 1 9.8163 4.5630 -8.0260 18 6 9.8647 6.6953 -7.8180 19 7 9.5170 7.7259 -7.0769 20 14 10.8066 6.9641 -9.4086 21 1 11.0751 5.6531 -10.0525 22 1 9.9995 7.8091 -10.3250 23 1 12.0934 7.6437 -9.1130 24 6 4.2019 1.1316 -1.1961 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6886 1.8464 0.8898 29 1 1.6887 1.8464 -0.8901 30 1 3.6624 1.1739 2.1334 31 1 6.1167 0.9789 2.1344 32 1 7.3451 0.8815 0.0022 33 1 7.2410 0.3775 -2.3697 34 1 5.7047 0.4990 -3.2603 35 1 7.6308 1.7958 -4.6280 36 1 6.8168 4.5002 -4.6348 37 1 8.3534 4.3792 -3.7446 38 1 9.3974 3.2667 -5.6999 39 1 7.8605 3.3880 -6.5894 40 1 8.5843 5.9712 -5.7058 41 1 9.7496 8.6250 -7.3568 42 1 3.6636 1.1696 -2.1316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147545790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:05 Heat of formation + Delta-G solvation = -51.292897 kcal Electronic energy + Delta-G solvation = -21789.107721 eV Core-core repulsion = 18348.301623 eV Total energy + Delta-G solvation = -3440.806099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.15542 -39.09156 -37.79991 -35.68314 -33.81724 -33.26786 -31.89140 -31.21203 -28.70769 -27.59721 -26.86314 -25.58993 -23.64662 -22.36539 -21.57345 -21.22389 -20.03001 -17.38923 -16.90195 -16.87214 -16.61891 -16.39317 -15.83716 -15.60453 -15.36958 -14.89917 -14.59744 -14.29068 -13.84287 -13.71437 -13.32945 -13.12390 -12.92446 -12.82844 -12.65392 -12.55309 -12.14741 -11.76772 -11.38995 -11.25655 -11.11659 -11.10094 -10.83436 -10.81104 -10.09797 -10.04770 -9.90004 -9.71602 -8.99505 -8.97498 -8.82010 -8.81685 -7.00253 -5.80583 -3.11327 1.11515 1.25184 2.74882 3.18979 3.41375 3.44215 3.48242 3.49465 3.91225 4.43406 4.56413 4.57352 4.67346 4.89566 4.90356 4.96222 4.99037 5.04793 5.06129 5.15344 5.29805 5.31215 5.32973 5.48254 5.49601 5.54639 5.77848 5.83873 5.90043 5.96216 6.15356 6.29138 6.37864 6.43645 6.49449 6.70107 6.75095 6.76554 6.84587 7.63501 7.65565 8.34753 8.37583 9.48305 10.03297 10.37892 11.42040 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029750 B = 0.002168 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.946340 B =12913.669199 C =13292.434899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.103 3.897 4 C -0.093 4.093 5 C -0.100 4.100 6 C -0.122 4.122 7 C -0.097 4.097 8 C -0.065 4.065 9 C -0.103 4.103 10 C 0.510 3.490 11 O -0.533 6.533 12 N -0.725 5.725 13 C 0.111 3.889 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.082 4.082 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.400 0.600 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.174 -18.882 16.016 28.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C 0.027 3.973 4 C -0.094 4.094 5 C -0.118 4.118 6 C -0.140 4.140 7 C -0.115 4.115 8 C -0.066 4.066 9 C -0.143 4.143 10 C 0.295 3.705 11 O -0.409 6.409 12 N -0.377 5.377 13 C -0.013 4.013 14 C 0.017 3.983 15 N -0.375 5.375 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.578 5.578 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.100 4.100 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.233 0.767 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.206 -18.362 16.344 28.392 hybrid contribution 0.391 0.427 -1.008 1.163 sum -13.815 -17.935 15.335 27.344 Atomic orbital electron populations 1.22761 0.81018 1.02818 1.00072 1.87967 1.19578 1.27580 1.95426 1.21351 0.89966 0.84950 1.01044 1.19462 0.93773 1.02560 0.93561 1.20987 0.94367 0.99214 0.97256 1.21065 0.94162 1.00757 0.98000 1.21034 0.99770 0.98729 0.91962 1.19255 0.93363 1.00129 0.93823 1.20688 1.01969 0.95485 0.96159 1.20464 0.78063 0.91048 0.80908 1.90739 1.53224 1.43415 1.53558 1.45948 1.57745 1.10081 1.23920 1.21563 1.00044 0.82261 0.97387 1.20756 0.95835 0.89980 0.91772 1.42204 1.67804 1.01261 1.26236 1.19241 1.27764 0.92355 0.98091 0.90960 1.24793 1.01548 0.95505 0.99103 1.69681 1.51406 0.97976 1.38781 0.86072 0.79271 0.77642 0.82892 1.20503 1.21778 1.21769 1.20842 0.93486 0.98161 0.97532 0.93948 0.89558 0.94049 0.92392 0.92279 0.86159 0.85854 0.86016 0.87839 0.87898 0.76670 0.91385 0.91359 0.95807 0.95812 0.78012 0.93406 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.87 10.69 -35.23 -0.38 -4.25 16 3 C 0.10 0.96 6.06 36.01 0.22 1.17 16 4 C -0.09 -1.03 5.51 -104.62 -0.58 -1.61 16 5 C -0.10 -1.03 9.70 -39.59 -0.38 -1.41 16 6 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 7 C -0.10 -1.05 9.70 -39.58 -0.38 -1.44 16 8 C -0.07 -0.74 4.37 -104.62 -0.46 -1.20 16 9 C -0.10 -0.99 5.83 -29.03 -0.17 -1.16 16 10 C 0.51 7.07 7.82 -10.99 -0.09 6.98 16 11 O -0.53 -9.83 16.03 5.55 0.09 -9.74 16 12 N -0.73 -9.62 5.56 -60.30 -0.33 -9.96 16 13 C 0.11 1.91 5.79 -4.05 -0.02 1.89 16 14 C 0.14 2.83 6.37 -4.05 -0.03 2.80 16 15 N -0.73 -18.63 5.60 -59.92 -0.34 -18.96 16 16 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 C -0.08 -0.94 9.36 -39.58 -0.37 -1.32 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.40 4.01 8.47 -40.82 -0.35 3.67 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.39 10.45 7.67 -40.82 -0.31 10.14 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -35.10 362.73 -8.12 -43.21 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.53 Total: 7.61 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.79 Total: -3.05 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.05 Total: -56.56 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.29 Total: -13.99 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.10 -8.12 -43.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147545790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.079 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds