Wall clock time and date at job start Tue Mar 31 2020 03:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00076 * 2 1 4 4 C 1.50701 * 109.47115 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99890 * 270.01677 * 4 3 2 6 6 C 1.38212 * 119.99859 * 179.97438 * 5 4 3 7 7 C 1.38255 * 120.00284 * 0.02562 * 6 5 4 8 8 C 1.38217 * 119.99740 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99801 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46977 * 269.95092 * 9 8 7 11 11 O 1.21285 * 119.99654 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00030 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00008 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47228 * 180.02562 * 13 12 10 15 15 N 1.46496 * 109.47228 * 180.02562 * 14 13 12 16 16 C 1.36936 * 120.00167 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00090 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00267 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99919 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47082 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47007 * 120.00308 * 20 18 16 23 23 H 1.48497 * 109.47246 * 240.00350 * 20 18 16 24 24 C 1.38215 * 119.99815 * 89.99840 * 4 3 2 25 25 H 1.09002 * 109.47070 * 60.00293 * 1 2 3 26 26 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47232 * 300.00065 * 1 2 3 28 28 H 1.08990 * 109.47298 * 59.99415 * 3 2 1 29 29 H 1.09006 * 109.47065 * 299.99406 * 3 2 1 30 30 H 1.08002 * 120.00364 * 0.02562 * 5 4 3 31 31 H 1.08000 * 119.99961 * 180.02562 * 6 5 4 32 32 H 1.07997 * 120.00435 * 180.02562 * 7 6 5 33 33 H 1.08994 * 109.46953 * 29.94909 * 9 8 7 34 34 H 1.08996 * 109.46834 * 149.95334 * 9 8 7 35 35 H 0.96993 * 119.99915 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.47367 * 300.00237 * 13 12 10 37 37 H 1.09004 * 109.47314 * 59.99743 * 13 12 10 38 38 H 1.08997 * 109.47015 * 299.99763 * 14 13 12 39 39 H 1.08999 * 109.47489 * 60.00015 * 14 13 12 40 40 H 0.97001 * 120.00463 * 359.97438 * 15 14 13 41 41 H 0.97005 * 119.99832 * 180.02562 * 19 18 16 42 42 H 1.07995 * 120.00164 * 359.72517 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2011 1.1317 1.1982 6 6 5.5789 1.0221 1.1988 7 6 6.2685 0.9676 0.0018 8 6 5.5802 1.0234 -1.1955 9 6 6.3320 0.9646 -2.5003 10 6 6.6943 2.3614 -2.9346 11 8 6.3740 3.3111 -2.2516 12 7 7.3743 2.5553 -4.0820 13 6 7.7260 3.9132 -4.5045 14 6 8.4882 3.8537 -5.8297 15 7 8.8405 5.2116 -6.2519 16 6 9.5314 5.4086 -7.4177 17 1 9.8163 4.5630 -8.0260 18 6 9.8647 6.6953 -7.8180 19 7 9.5170 7.7259 -7.0769 20 14 10.8066 6.9641 -9.4086 21 1 11.0751 5.6531 -10.0525 22 1 9.9995 7.8091 -10.3250 23 1 12.0934 7.6437 -9.1130 24 6 4.2019 1.1316 -1.1961 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6886 1.8464 0.8898 29 1 1.6887 1.8464 -0.8901 30 1 3.6624 1.1739 2.1334 31 1 6.1167 0.9789 2.1344 32 1 7.3451 0.8815 0.0022 33 1 7.2410 0.3775 -2.3697 34 1 5.7047 0.4990 -3.2603 35 1 7.6308 1.7958 -4.6280 36 1 6.8168 4.5002 -4.6348 37 1 8.3534 4.3792 -3.7446 38 1 9.3974 3.2667 -5.6999 39 1 7.8605 3.3880 -6.5894 40 1 8.5843 5.9712 -5.7058 41 1 9.7496 8.6250 -7.3568 42 1 3.6636 1.1696 -2.1316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147545790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:04 Heat of formation + Delta-G solvation = -76.112479 kcal Electronic energy + Delta-G solvation = -21790.183979 eV Core-core repulsion = 18348.301623 eV Total energy + Delta-G solvation = -3441.882356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10721 -40.04346 -38.50205 -37.29489 -35.46262 -34.11686 -33.12438 -32.60214 -30.02903 -28.39933 -27.95526 -26.23562 -25.51853 -23.33693 -22.98655 -22.20838 -21.05058 -19.32747 -18.06670 -17.66526 -17.30595 -17.15305 -16.87928 -16.64830 -16.56408 -16.25374 -15.85490 -15.30733 -15.15069 -15.07349 -14.87714 -14.54192 -13.99657 -13.58152 -13.35456 -13.34472 -13.12567 -13.04825 -12.82896 -12.63439 -12.50203 -12.34915 -12.05103 -11.98534 -11.85575 -11.82975 -11.01016 -11.00593 -10.68070 -10.11731 -9.76422 -9.62565 -9.07183 -7.97617 -5.29063 0.32770 0.45608 1.48283 1.49722 1.59892 1.66439 2.14257 2.56545 2.69157 3.18603 3.36768 3.65184 3.85394 3.92573 3.99752 4.06370 4.18013 4.20736 4.22911 4.28451 4.35391 4.44550 4.51229 4.54637 4.58876 4.60797 4.64149 4.76825 4.85658 5.03091 5.10090 5.13924 5.15285 5.40808 5.49508 5.52138 5.60687 5.64360 6.07333 6.17784 6.23385 6.59258 7.28897 7.29545 8.01563 8.24150 9.26289 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029750 B = 0.002168 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.946340 B =12913.669199 C =13292.434899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.104 3.896 4 C -0.109 4.109 5 C -0.110 4.110 6 C -0.129 4.129 7 C -0.112 4.112 8 C -0.082 4.082 9 C -0.092 4.092 10 C 0.509 3.491 11 O -0.584 6.584 12 N -0.712 5.712 13 C 0.128 3.872 14 C 0.149 3.851 15 N -0.748 5.748 16 C -0.246 4.246 17 H 0.084 0.916 18 C -0.080 4.080 19 N -0.971 5.971 20 Si 0.980 3.020 21 H -0.261 1.261 22 H -0.294 1.294 23 H -0.294 1.294 24 C -0.101 4.101 25 H 0.048 0.952 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.419 0.581 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.373 0.627 41 H 0.252 0.748 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.097 -21.011 15.714 29.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.028 3.972 4 C -0.110 4.110 5 C -0.128 4.128 6 C -0.147 4.147 7 C -0.130 4.130 8 C -0.083 4.083 9 C -0.131 4.131 10 C 0.297 3.703 11 O -0.463 6.463 12 N -0.365 5.365 13 C 0.003 3.997 14 C 0.022 3.978 15 N -0.392 5.392 16 C -0.378 4.378 17 H 0.102 0.898 18 C -0.272 4.272 19 N -0.622 5.622 20 Si 0.809 3.191 21 H -0.185 1.185 22 H -0.221 1.221 23 H -0.221 1.221 24 C -0.119 4.119 25 H 0.067 0.933 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.256 0.744 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.131 -20.585 16.024 29.668 hybrid contribution 0.300 1.011 -0.839 1.347 sum -13.831 -19.574 15.185 28.373 Atomic orbital electron populations 1.22952 0.79385 1.03919 1.00969 1.87923 1.21445 1.27945 1.95604 1.21366 0.89138 0.84973 1.01742 1.19785 0.94872 1.02480 0.93817 1.21288 0.94770 0.98895 0.97837 1.21403 0.94379 1.00059 0.98833 1.21337 1.00638 0.98818 0.92204 1.19517 0.93553 1.00409 0.94776 1.20722 1.03661 0.92669 0.96029 1.21237 0.76722 0.92303 0.80004 1.90724 1.55117 1.45454 1.55021 1.45752 1.57495 1.09029 1.24237 1.21102 0.98500 0.84226 0.95845 1.20860 0.96721 0.87312 0.92900 1.42456 1.67784 1.03208 1.25713 1.19702 1.26757 0.92710 0.98629 0.89780 1.25700 1.03316 0.95448 1.02714 1.69849 1.53339 0.98184 1.40812 0.84978 0.77353 0.78011 0.78796 1.18507 1.22097 1.22075 1.21062 0.94001 0.98840 0.98029 0.93308 0.88423 0.92885 0.91140 0.92102 0.84448 0.83751 0.84707 0.84729 0.85212 0.74384 0.93247 0.93160 0.94338 0.94386 0.79539 0.93925 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.89 10.69 -148.98 -1.59 -9.49 16 3 C 0.10 1.87 6.06 71.24 0.43 2.30 16 4 C -0.11 -2.37 5.51 -19.87 -0.11 -2.48 16 5 C -0.11 -2.17 9.70 22.27 0.22 -1.95 16 6 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 7 C -0.11 -2.30 9.70 22.27 0.22 -2.08 16 8 C -0.08 -1.77 4.37 -19.86 -0.09 -1.86 16 9 C -0.09 -1.54 5.83 29.10 0.17 -1.37 16 10 C 0.51 13.49 7.82 87.66 0.69 14.17 16 11 O -0.58 -21.62 16.03 -3.05 -0.05 -21.67 16 12 N -0.71 -17.69 5.56 -463.06 -2.57 -20.26 16 13 C 0.13 4.38 5.79 86.38 0.50 4.88 16 14 C 0.15 5.62 6.37 86.38 0.55 6.17 16 15 N -0.75 -38.17 5.60 -343.47 -1.92 -40.09 16 16 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 19 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 20 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 C -0.10 -2.28 9.36 22.27 0.21 -2.08 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 29 H 0.06 1.03 8.09 -2.38 -0.02 1.01 16 30 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.13 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.13 1.51 8.09 -2.39 -0.02 1.49 16 35 H 0.42 7.18 8.47 -92.71 -0.79 6.39 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 1.90 8.14 -2.38 -0.02 1.89 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.37 20.67 7.67 -92.71 -0.71 19.96 16 41 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 42 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -76.38 362.73 1.26 -75.13 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.48 Total: 30.42 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.56 Total: -1.92 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -4.21 Total: -120.29 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.64 Total: -31.15 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -76.38 1.26 -75.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147545790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.985 kcal (2) G-P(sol) polarization free energy of solvation -76.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds