Wall clock time and date at job start Tue Mar 31 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99920 * 2 1 4 4 C 1.52998 * 109.47148 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47252 * 60.00165 * 3 2 1 6 6 O 1.21287 * 119.99988 * 215.01985 * 5 3 2 7 7 N 1.34774 * 120.00286 * 35.02169 * 5 3 2 8 8 C 1.46499 * 120.00356 * 180.02562 * 7 5 3 9 9 C 1.52994 * 109.47208 * 179.97438 * 8 7 5 10 10 N 1.46499 * 109.47208 * 179.97438 * 9 8 7 11 11 C 1.36941 * 120.00171 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99583 * 359.97438 * 11 10 9 13 13 C 1.38817 * 120.00023 * 180.02562 * 11 10 9 14 14 N 1.31614 * 119.99594 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 119.99924 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47527 * 90.00274 * 15 13 11 17 17 H 1.48501 * 109.47193 * 210.00219 * 15 13 11 18 18 H 1.48509 * 109.47269 * 330.00154 * 15 13 11 19 19 C 1.50707 * 109.47228 * 299.99732 * 3 2 1 20 20 C 1.38234 * 120.00078 * 257.34676 * 19 3 2 21 21 C 1.38240 * 119.99431 * 180.02562 * 20 19 3 22 22 C 1.38232 * 120.00262 * 359.95570 * 21 20 19 23 23 C 1.38236 * 120.00085 * 0.27944 * 22 21 20 24 24 C 1.38233 * 119.99670 * 359.53104 * 23 22 21 25 25 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46688 * 300.00250 * 1 2 3 27 27 H 1.08998 * 109.47039 * 59.99798 * 1 2 3 28 28 H 1.08999 * 109.47398 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.47314 * 300.00020 * 4 3 2 30 30 H 1.09002 * 109.47056 * 59.99826 * 4 3 2 31 31 H 0.97000 * 119.99998 * 359.97438 * 7 5 3 32 32 H 1.09006 * 109.47122 * 299.99921 * 8 7 5 33 33 H 1.09006 * 109.47012 * 59.99760 * 8 7 5 34 34 H 1.08992 * 109.47751 * 300.00224 * 9 8 7 35 35 H 1.09006 * 109.47144 * 60.00069 * 9 8 7 36 36 H 0.97002 * 120.00387 * 359.97438 * 10 9 8 37 37 H 0.97008 * 119.99790 * 179.97438 * 14 13 11 38 38 H 1.07997 * 119.99922 * 359.97438 * 20 19 3 39 39 H 1.07995 * 119.99155 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.99566 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.99801 * 179.72377 * 23 22 21 42 42 H 1.08008 * 119.99813 * 180.21230 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5656 2.0533 1.2304 6 8 1.3706 3.2491 1.1759 7 7 1.3847 1.3933 2.3915 8 6 0.9519 2.1202 3.5876 9 6 0.8230 1.1443 4.7588 10 7 0.3908 1.8713 5.9549 11 6 0.2071 1.2007 7.1347 12 1 0.3804 0.1358 7.1832 13 6 -0.2030 1.8896 8.2680 14 7 -0.3800 1.2449 9.4017 15 14 -0.5034 3.7312 8.1839 16 1 -1.9204 3.9856 7.8199 17 1 -0.2152 4.3407 9.5071 18 1 0.3867 4.3317 7.1579 19 6 1.5656 2.0533 -1.2305 20 6 2.4263 2.1929 -2.3032 21 6 2.0185 2.8794 -3.4317 22 6 0.7498 3.4254 -3.4878 23 6 -0.1091 3.2899 -2.4132 24 6 0.2972 2.6001 -1.2863 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.9788 2.1804 -0.0002 29 1 3.8575 0.6436 0.8891 30 1 3.8567 0.6439 -0.8909 31 1 1.5403 0.4369 2.4351 32 1 1.6868 2.8872 3.8324 33 1 -0.0136 2.5894 3.3981 34 1 0.0881 0.3776 4.5138 35 1 1.7883 0.6748 4.9484 36 1 0.2355 2.8278 5.9116 37 1 -0.6662 1.7263 10.1938 38 1 3.4175 1.7665 -2.2592 39 1 2.6911 2.9889 -4.2695 40 1 0.4312 3.9614 -4.3697 41 1 -1.0988 3.7204 -2.4554 42 1 -0.3751 2.4913 -0.4481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148203608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:17 Heat of formation + Delta-G solvation = -30.334319 kcal Electronic energy + Delta-G solvation = -23431.937757 eV Core-core repulsion = 19992.040491 eV Total energy + Delta-G solvation = -3439.897266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15066 -38.89970 -37.57939 -35.93324 -33.96075 -33.25452 -31.45689 -31.22392 -29.85943 -28.26774 -26.61057 -25.16661 -23.48482 -22.63858 -21.72313 -21.48747 -20.00293 -18.22596 -17.74123 -17.44008 -16.45936 -15.85777 -15.72760 -15.27275 -14.81692 -14.74137 -14.53555 -14.24585 -14.00052 -13.80530 -13.72724 -13.23950 -12.92168 -12.72210 -12.68733 -12.58344 -12.13461 -12.06920 -11.61722 -11.53726 -11.34010 -11.17345 -10.97884 -10.87444 -10.50554 -10.18862 -9.66010 -9.52247 -9.12515 -9.10105 -9.02138 -8.91557 -7.33192 -5.82302 -3.19885 1.03200 1.18930 2.44217 2.97608 3.35744 3.36670 3.39720 3.44050 3.66633 4.20329 4.42407 4.55248 4.66291 4.75844 4.82473 4.87129 5.12017 5.15493 5.19320 5.28431 5.29106 5.37808 5.39888 5.41465 5.51528 5.57212 5.61140 5.68786 5.76948 5.78595 5.90646 6.19784 6.26884 6.30014 6.32697 6.53217 6.54834 6.66454 6.73532 7.46852 7.91042 8.11917 8.35669 9.13192 9.85470 10.03659 11.35536 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027910 B = 0.003177 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.986834 B = 8811.198994 C = 9184.409465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.361 6.361 3 C 0.143 3.857 4 C -0.139 4.139 5 C 0.492 3.508 6 O -0.527 6.527 7 N -0.714 5.714 8 C 0.106 3.894 9 C 0.149 3.851 10 N -0.752 5.752 11 C -0.249 4.249 12 H 0.092 0.908 13 C 0.007 3.993 14 N -0.931 5.931 15 Si 0.885 3.115 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.276 1.276 19 C -0.101 4.101 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.113 4.113 23 C -0.124 4.124 24 C -0.085 4.085 25 H 0.095 0.905 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.406 0.594 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.363 0.637 37 H 0.261 0.739 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -0.222 -27.926 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.280 6.280 3 C 0.101 3.899 4 C -0.196 4.196 5 C 0.276 3.724 6 O -0.403 6.403 7 N -0.366 5.366 8 C -0.018 4.018 9 C 0.021 3.979 10 N -0.399 5.399 11 C -0.379 4.379 12 H 0.109 0.891 13 C -0.189 4.189 14 N -0.579 5.579 15 Si 0.715 3.285 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.202 1.202 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.144 4.144 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.103 4.103 25 H 0.113 0.887 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.242 0.758 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.196 0.804 37 H 0.071 0.929 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.809 0.287 -27.752 28.167 hybrid contribution -0.468 1.113 0.225 1.229 sum 4.341 1.400 -27.527 27.902 Atomic orbital electron populations 1.23150 0.80572 1.03693 1.01179 1.88035 1.20450 1.24861 1.94640 1.20553 0.96194 0.83173 0.90008 1.21847 0.89764 1.03722 1.04295 1.20997 0.78062 0.88276 0.85088 1.90745 1.49938 1.14545 1.85057 1.45958 1.68286 1.12772 1.09571 1.21643 1.00337 0.95764 0.84052 1.20724 0.98245 0.93460 0.85456 1.42534 1.83466 1.06885 1.06998 1.19010 1.39054 0.94301 0.85507 0.89061 1.24672 1.01184 0.97591 0.95445 1.69700 1.52840 1.35056 1.00272 0.86547 0.78270 0.86751 0.76975 1.20924 1.21555 1.20205 1.19794 0.95130 1.00035 0.95219 1.21098 0.99470 0.98354 0.92759 1.21120 0.96459 0.98753 0.98109 1.21196 0.94131 0.99309 0.98473 1.21126 1.00084 0.99344 0.93629 1.21077 0.95511 0.95957 0.97744 0.88674 0.93178 0.92827 0.90003 0.90589 0.90030 0.75835 0.91227 0.91364 0.94865 0.94854 0.80410 0.92917 0.85342 0.85865 0.86039 0.85905 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.49 101.05 0.96 1.06 16 2 O -0.36 -3.90 9.68 -35.23 -0.34 -4.24 16 3 C 0.14 1.62 1.00 -92.92 -0.09 1.53 16 4 C -0.14 -1.26 7.71 37.16 0.29 -0.98 16 5 C 0.49 6.86 4.84 -10.99 -0.05 6.81 16 6 O -0.53 -9.14 15.20 5.55 0.08 -9.06 16 7 N -0.71 -9.52 4.69 -60.29 -0.28 -9.81 16 8 C 0.11 1.70 5.79 -4.05 -0.02 1.67 16 9 C 0.15 2.77 6.37 -4.05 -0.03 2.74 16 10 N -0.75 -17.83 5.41 -59.91 -0.32 -18.15 16 11 C -0.25 -7.03 10.47 -15.06 -0.16 -7.19 16 12 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 13 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 14 N -0.93 -29.15 13.97 55.49 0.78 -28.37 16 15 Si 0.88 22.15 27.74 -169.99 -4.71 17.44 16 16 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 18 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 19 C -0.10 -1.16 4.35 -104.62 -0.46 -1.61 16 20 C -0.10 -0.96 9.11 -39.58 -0.36 -1.32 16 21 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 22 C -0.11 -1.00 10.05 -39.58 -0.40 -1.40 16 23 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 24 C -0.08 -1.00 6.26 -39.58 -0.25 -1.24 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.52 6.62 -51.93 -0.34 0.18 16 27 H 0.05 0.51 5.51 -51.93 -0.29 0.22 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.59 6.77 -51.93 -0.35 0.24 16 31 H 0.41 4.68 7.91 -40.82 -0.32 4.36 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.36 8.46 5.53 -40.82 -0.23 8.24 16 37 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 38 H 0.13 0.97 5.96 -52.49 -0.31 0.66 16 39 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.47 6.39 -52.48 -0.34 1.13 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -33.85 340.69 -7.13 -40.97 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.00 Total: 9.05 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.46 Total: -2.96 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.17 Total: -56.33 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.26 Total: -13.30 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.85 -7.13 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148203608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.638 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds