Wall clock time and date at job start Tue Mar 31 2020 02:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99920 * 2 1 4 4 C 1.52998 * 109.47148 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47252 * 60.00165 * 3 2 1 6 6 O 1.21287 * 119.99988 * 215.01985 * 5 3 2 7 7 N 1.34774 * 120.00286 * 35.02169 * 5 3 2 8 8 C 1.46499 * 120.00356 * 180.02562 * 7 5 3 9 9 C 1.52994 * 109.47208 * 179.97438 * 8 7 5 10 10 N 1.46499 * 109.47208 * 179.97438 * 9 8 7 11 11 C 1.36941 * 120.00171 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99583 * 359.97438 * 11 10 9 13 13 C 1.38817 * 120.00023 * 180.02562 * 11 10 9 14 14 N 1.31614 * 119.99594 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 119.99924 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47527 * 90.00274 * 15 13 11 17 17 H 1.48501 * 109.47193 * 210.00219 * 15 13 11 18 18 H 1.48509 * 109.47269 * 330.00154 * 15 13 11 19 19 C 1.50707 * 109.47228 * 299.99732 * 3 2 1 20 20 C 1.38234 * 120.00078 * 257.34676 * 19 3 2 21 21 C 1.38240 * 119.99431 * 180.02562 * 20 19 3 22 22 C 1.38232 * 120.00262 * 359.95570 * 21 20 19 23 23 C 1.38236 * 120.00085 * 0.27944 * 22 21 20 24 24 C 1.38233 * 119.99670 * 359.53104 * 23 22 21 25 25 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46688 * 300.00250 * 1 2 3 27 27 H 1.08998 * 109.47039 * 59.99798 * 1 2 3 28 28 H 1.08999 * 109.47398 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.47314 * 300.00020 * 4 3 2 30 30 H 1.09002 * 109.47056 * 59.99826 * 4 3 2 31 31 H 0.97000 * 119.99998 * 359.97438 * 7 5 3 32 32 H 1.09006 * 109.47122 * 299.99921 * 8 7 5 33 33 H 1.09006 * 109.47012 * 59.99760 * 8 7 5 34 34 H 1.08992 * 109.47751 * 300.00224 * 9 8 7 35 35 H 1.09006 * 109.47144 * 60.00069 * 9 8 7 36 36 H 0.97002 * 120.00387 * 359.97438 * 10 9 8 37 37 H 0.97008 * 119.99790 * 179.97438 * 14 13 11 38 38 H 1.07997 * 119.99922 * 359.97438 * 20 19 3 39 39 H 1.07995 * 119.99155 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.99566 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.99801 * 179.72377 * 23 22 21 42 42 H 1.08008 * 119.99813 * 180.21230 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5656 2.0533 1.2304 6 8 1.3706 3.2491 1.1759 7 7 1.3847 1.3933 2.3915 8 6 0.9519 2.1202 3.5876 9 6 0.8230 1.1443 4.7588 10 7 0.3908 1.8713 5.9549 11 6 0.2071 1.2007 7.1347 12 1 0.3804 0.1358 7.1832 13 6 -0.2030 1.8896 8.2680 14 7 -0.3800 1.2449 9.4017 15 14 -0.5034 3.7312 8.1839 16 1 -1.9204 3.9856 7.8199 17 1 -0.2152 4.3407 9.5071 18 1 0.3867 4.3317 7.1579 19 6 1.5656 2.0533 -1.2305 20 6 2.4263 2.1929 -2.3032 21 6 2.0185 2.8794 -3.4317 22 6 0.7498 3.4254 -3.4878 23 6 -0.1091 3.2899 -2.4132 24 6 0.2972 2.6001 -1.2863 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.9788 2.1804 -0.0002 29 1 3.8575 0.6436 0.8891 30 1 3.8567 0.6439 -0.8909 31 1 1.5403 0.4369 2.4351 32 1 1.6868 2.8872 3.8324 33 1 -0.0136 2.5894 3.3981 34 1 0.0881 0.3776 4.5138 35 1 1.7883 0.6748 4.9484 36 1 0.2355 2.8278 5.9116 37 1 -0.6662 1.7263 10.1938 38 1 3.4175 1.7665 -2.2592 39 1 2.6911 2.9889 -4.2695 40 1 0.4312 3.9614 -4.3697 41 1 -1.0988 3.7204 -2.4554 42 1 -0.3751 2.4913 -0.4481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148203608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:16 Heat of formation + Delta-G solvation = -54.299537 kcal Electronic energy + Delta-G solvation = -23432.976967 eV Core-core repulsion = 19992.040491 eV Total energy + Delta-G solvation = -3440.936476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07968 -39.81774 -38.45571 -37.50911 -35.57732 -34.04525 -33.46519 -31.94457 -30.71859 -29.77349 -27.37785 -26.26554 -25.01966 -23.45124 -23.20369 -22.59661 -21.00570 -19.90138 -18.99583 -18.38726 -17.37369 -17.04326 -16.65873 -16.43176 -16.31545 -15.74124 -15.58386 -15.51703 -15.41743 -15.01529 -14.71480 -14.61615 -14.13773 -13.66893 -13.49950 -13.48023 -13.42467 -13.18140 -12.84260 -12.77466 -12.72406 -12.64344 -12.13414 -12.11138 -11.89429 -11.84640 -11.36991 -11.06032 -10.55873 -10.23999 -9.82815 -9.78385 -9.39239 -8.06998 -5.42722 0.29505 0.46556 1.35476 1.37510 1.39322 1.46592 1.90207 2.44978 2.54819 2.91578 3.24673 3.36819 3.47985 3.75301 3.84089 3.95845 4.06478 4.11211 4.14359 4.23848 4.35392 4.40473 4.48122 4.53961 4.59827 4.68570 4.71890 4.79001 4.93919 4.99204 5.03965 5.08481 5.10906 5.25412 5.50175 5.55286 5.57543 5.70296 5.78670 6.04872 6.15745 6.39917 7.00234 7.03632 7.74938 7.92997 9.13818 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027910 B = 0.003177 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.986834 B = 8811.198994 C = 9184.409465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.362 6.362 3 C 0.148 3.852 4 C -0.140 4.140 5 C 0.493 3.507 6 O -0.563 6.563 7 N -0.705 5.705 8 C 0.122 3.878 9 C 0.151 3.849 10 N -0.758 5.758 11 C -0.239 4.239 12 H 0.063 0.937 13 C -0.059 4.059 14 N -0.979 5.979 15 Si 0.953 3.047 16 H -0.277 1.277 17 H -0.293 1.293 18 H -0.254 1.254 19 C -0.120 4.120 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.115 4.115 23 C -0.137 4.137 24 C -0.106 4.106 25 H 0.114 0.886 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.417 0.583 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.367 0.633 37 H 0.260 0.740 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.134 0.866 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.776 0.444 -30.627 31.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.280 6.280 3 C 0.105 3.895 4 C -0.197 4.197 5 C 0.279 3.721 6 O -0.442 6.442 7 N -0.358 5.358 8 C -0.003 4.003 9 C 0.025 3.975 10 N -0.404 5.404 11 C -0.370 4.370 12 H 0.081 0.919 13 C -0.251 4.251 14 N -0.629 5.629 15 Si 0.780 3.220 16 H -0.203 1.203 17 H -0.219 1.219 18 H -0.179 1.179 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.145 4.145 22 C -0.133 4.133 23 C -0.155 4.155 24 C -0.125 4.125 25 H 0.133 0.867 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.254 0.746 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.200 0.800 37 H 0.069 0.931 38 H 0.168 0.832 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.152 0.848 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.747 0.923 -30.511 31.061 hybrid contribution -0.752 0.814 0.977 1.478 sum 4.994 1.737 -29.533 30.003 Atomic orbital electron populations 1.23229 0.80155 1.04757 1.00612 1.88034 1.20915 1.24577 1.94507 1.20557 0.97442 0.82956 0.88506 1.21923 0.87942 1.04145 1.05668 1.21573 0.76931 0.87970 0.85671 1.90721 1.51489 1.16298 1.85644 1.45826 1.68001 1.13157 1.08801 1.21275 0.99951 0.94954 0.84087 1.20808 0.98383 0.93770 0.84579 1.42538 1.83574 1.07199 1.07129 1.19004 1.37438 0.93378 0.87137 0.91879 1.25485 1.01872 1.02633 0.95106 1.69868 1.54793 1.37111 1.01169 0.85449 0.78628 0.80752 0.77206 1.20314 1.21937 1.17915 1.19925 0.95466 1.00862 0.95861 1.21411 1.00090 0.98320 0.92477 1.21525 0.96787 0.97607 0.98567 1.21554 0.94050 0.98899 0.98783 1.21367 1.01082 0.99348 0.93709 1.21089 0.95874 0.97475 0.98033 0.86735 0.94369 0.92853 0.90059 0.90160 0.87786 0.74618 0.91930 0.91957 0.94117 0.94181 0.80030 0.93132 0.83250 0.82981 0.83499 0.84840 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.49 113.37 1.08 1.23 16 2 O -0.36 -7.30 9.68 -148.98 -1.44 -8.74 16 3 C 0.15 3.17 1.00 -12.29 -0.01 3.15 16 4 C -0.14 -2.24 7.71 71.98 0.55 -1.69 16 5 C 0.49 13.48 4.84 87.66 0.42 13.90 16 6 O -0.56 -19.56 15.20 -3.05 -0.05 -19.61 16 7 N -0.70 -18.22 4.69 -463.06 -2.17 -20.39 16 8 C 0.12 3.80 5.79 86.38 0.50 4.30 16 9 C 0.15 5.47 6.37 86.38 0.55 6.02 16 10 N -0.76 -35.29 5.41 -343.46 -1.86 -37.15 16 11 C -0.24 -13.56 10.47 84.03 0.88 -12.68 16 12 H 0.06 3.87 8.06 -2.91 -0.02 3.84 16 13 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 14 N -0.98 -62.50 13.97 21.65 0.30 -62.20 16 15 Si 0.95 45.65 27.74 68.60 1.90 47.55 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 18 H -0.25 -11.16 6.52 99.48 0.65 -10.51 16 19 C -0.12 -2.62 4.35 -19.86 -0.09 -2.71 16 20 C -0.11 -1.79 9.11 22.27 0.20 -1.59 16 21 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 22 C -0.12 -1.78 10.05 22.27 0.22 -1.55 16 23 C -0.14 -2.65 10.05 22.27 0.22 -2.42 16 24 C -0.11 -2.48 6.26 22.27 0.14 -2.34 16 25 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 0.79 6.62 -2.39 -0.02 0.77 16 27 H 0.05 1.00 5.51 -2.39 -0.01 0.99 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.19 6.77 -2.39 -0.02 1.17 16 31 H 0.42 9.07 7.91 -92.71 -0.73 8.34 16 32 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.37 16.51 5.53 -92.71 -0.51 16.00 16 37 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 38 H 0.15 1.78 5.96 -2.91 -0.02 1.76 16 39 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 40 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 42 H 0.10 2.61 6.39 -2.91 -0.02 2.59 16 Total: -1.00 -73.28 340.69 1.79 -71.49 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.27 Total: 30.04 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 5.37 Total: -1.00 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -3.73 Total: -119.74 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -1.49 Total: -28.35 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Total: -73.28 1.79 -71.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148203608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.195 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds