Wall clock time and date at job start Tue Mar 31 2020 03:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48508 * 109.47069 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47200 * 299.99831 * 3 2 1 6 6 H 1.48500 * 109.47350 * 60.00071 * 3 2 1 7 7 C 1.38812 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00329 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99832 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46853 * 175.58970 * 10 9 7 12 12 C 1.52997 * 115.55016 * 303.90661 * 11 10 9 13 13 C 1.53005 * 109.46900 * 278.02938 * 12 11 10 14 14 N 1.46495 * 109.46889 * 175.03011 * 13 12 11 15 15 C 1.34781 * 119.99849 * 180.02562 * 14 13 12 16 16 O 1.21277 * 119.99931 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.99643 * 179.97438 * 15 14 13 18 18 C 1.50699 * 109.46801 * 179.97438 * 17 15 14 19 19 N 1.30501 * 125.64796 * 304.69469 * 18 17 15 20 20 C 1.34132 * 109.25356 * 179.89117 * 19 18 17 21 21 C 1.34667 * 108.02236 * 0.37230 * 20 19 18 22 22 N 1.35041 * 125.64983 * 124.99785 * 18 17 15 23 23 H 0.96997 * 126.40077 * 359.97438 * 22 18 17 24 24 C 1.53002 * 117.51190 * 89.60487 * 11 10 9 25 25 C 1.52999 * 117.49347 * 158.23144 * 11 10 9 26 26 H 0.97001 * 120.00450 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00018 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.46890 * 55.59680 * 10 9 7 29 29 H 1.08994 * 109.47748 * 295.59612 * 10 9 7 30 30 H 1.09000 * 109.46668 * 158.03418 * 12 11 10 31 31 H 1.08999 * 109.47419 * 38.03254 * 12 11 10 32 32 H 1.09001 * 109.47209 * 55.02609 * 13 12 11 33 33 H 1.08996 * 109.47076 * 295.02558 * 13 12 11 34 34 H 0.97004 * 120.00231 * 359.97438 * 14 13 12 35 35 H 1.08996 * 109.47282 * 299.99736 * 17 15 14 36 36 H 1.08996 * 109.46926 * 60.00194 * 17 15 14 37 37 H 1.08005 * 125.99209 * 180.11000 * 20 19 18 38 38 H 1.08006 * 126.59351 * 179.81559 * 21 20 19 39 39 H 1.08994 * 117.49756 * 214.96775 * 24 11 10 40 40 H 1.08993 * 117.49858 * 359.97438 * 24 11 10 41 41 H 1.08996 * 117.50356 * 359.97438 * 25 11 10 42 42 H 1.09001 * 117.49323 * 145.00009 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0675 -4.8176 0.1115 12 6 0.1320 -4.7734 1.3213 13 6 0.8590 -5.3268 2.5486 14 7 0.0067 -5.1754 3.7304 15 6 0.4431 -5.5957 4.9343 16 8 1.5413 -6.0997 5.0391 17 6 -0.4335 -5.4394 6.1502 18 6 0.2825 -5.9845 7.3590 19 7 0.7708 -7.1892 7.4747 20 6 1.3389 -7.3221 8.6825 21 6 1.1901 -6.1582 9.3433 22 7 0.5200 -5.3093 8.5041 23 1 0.2636 -4.3937 8.6962 24 6 0.5125 -5.3999 -1.1900 25 6 1.5337 -6.1925 -0.3715 26 1 -0.4851 0.8400 0.0004 27 1 0.3556 -2.3881 0.0005 28 1 2.7426 -3.6811 0.8485 29 1 2.6243 -3.7495 -0.9262 30 1 -0.7520 -5.3783 1.1192 31 1 -0.1685 -3.7430 1.5109 32 1 1.7887 -4.7779 2.6983 33 1 1.0812 -6.3826 2.3938 34 1 -0.8715 -4.7720 3.6467 35 1 -0.6557 -4.3836 6.3046 36 1 -1.3632 -5.9884 6.0008 37 1 1.8263 -8.2087 9.0606 38 1 1.5339 -5.9368 10.3429 39 1 -0.5191 -5.7516 -1.1843 40 1 0.8526 -4.9558 -2.1254 41 1 2.5457 -6.2700 -0.7686 42 1 1.1738 -7.0657 0.1728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167528920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:19 Heat of formation + Delta-G solvation = 26.608107 kcal Electronic energy + Delta-G solvation = -22564.152124 eV Core-core repulsion = 19159.016818 eV Total energy + Delta-G solvation = -3405.135306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.94717 -40.61314 -39.48050 -36.06091 -35.69604 -33.44593 -33.14644 -32.78758 -30.97216 -28.33410 -27.71426 -24.66526 -24.55709 -23.05372 -22.48127 -22.11879 -21.22792 -19.93748 -19.04954 -18.85995 -17.98055 -16.94562 -16.83192 -16.65799 -16.20020 -15.84658 -15.59067 -15.17021 -15.06220 -14.74496 -14.70257 -14.36211 -14.22044 -13.93725 -13.83928 -13.16339 -13.09024 -12.97741 -12.81643 -12.50257 -12.26355 -12.07372 -11.93410 -11.81689 -11.11001 -10.99814 -10.98164 -10.89677 -10.84269 -10.52547 -10.03711 -9.32671 -8.96475 -7.94436 -5.21648 1.09743 1.46594 1.47259 1.57089 1.69807 1.97764 2.26620 2.52503 2.55972 2.91905 3.38403 3.38810 3.81576 3.86142 3.97712 4.03449 4.05550 4.13298 4.29563 4.39270 4.45256 4.45567 4.50144 4.60473 4.69011 4.79911 4.85064 4.95493 5.00356 5.08858 5.16498 5.21818 5.29710 5.34757 5.40104 5.49518 5.51078 5.84530 6.28409 6.51440 6.64130 7.22124 7.32677 7.35718 8.11079 8.38171 9.28863 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.003296 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.433326 B = 8491.849468 C = 9929.581879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.734 5.734 10 C 0.188 3.812 11 C -0.140 4.140 12 C -0.077 4.077 13 C 0.137 3.863 14 N -0.718 5.718 15 C 0.510 3.490 16 O -0.573 6.573 17 C -0.049 4.049 18 C 0.199 3.801 19 N -0.514 5.514 20 C -0.069 4.069 21 C -0.037 4.037 22 N -0.556 5.556 23 H 0.435 0.565 24 C -0.162 4.162 25 C -0.155 4.155 26 H 0.252 0.748 27 H 0.378 0.622 28 H 0.014 0.986 29 H 0.013 0.987 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.416 0.584 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.178 0.822 38 H 0.216 0.784 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 -12.515 14.890 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.086 0.914 9 N -0.377 5.377 10 C 0.062 3.938 11 C -0.141 4.141 12 C -0.114 4.114 13 C 0.013 3.987 14 N -0.371 5.371 15 C 0.296 3.704 16 O -0.451 6.451 17 C -0.090 4.090 18 C -0.066 4.066 19 N -0.234 5.234 20 C -0.216 4.216 21 C -0.172 4.172 22 N -0.161 5.161 23 H 0.276 0.724 24 C -0.199 4.199 25 C -0.192 4.192 26 H 0.061 0.939 27 H 0.211 0.789 28 H 0.032 0.968 29 H 0.030 0.970 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.253 0.747 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.195 0.805 38 H 0.233 0.767 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.935 -13.423 14.362 20.048 hybrid contribution 0.026 2.240 0.454 2.286 sum -3.909 -11.183 14.816 18.970 Atomic orbital electron populations 1.69793 1.06260 1.25922 1.59420 1.25448 0.96413 1.00620 1.03715 0.85152 0.78086 0.80195 0.76796 1.19664 1.21935 1.21801 1.19615 0.91275 0.85588 1.41265 0.91436 1.42432 1.05693 1.00503 1.89087 1.20208 0.92652 0.84263 0.96683 1.21425 1.01422 0.94834 0.96440 1.21106 0.97249 1.01751 0.91338 1.21083 0.93240 1.00317 0.84049 1.45874 1.21335 1.62851 1.07033 1.20811 0.87197 0.77303 0.85079 1.90748 1.23535 1.44649 1.86205 1.20055 0.98087 1.05468 0.85356 1.22678 1.04314 0.89338 0.90260 1.70155 1.14444 1.18473 1.20300 1.22783 1.06743 1.00420 0.91687 1.23309 1.03020 0.91364 0.99526 1.43233 1.44373 1.15618 1.12841 0.72394 1.23055 0.99675 1.03005 0.94150 1.23040 0.99731 0.93485 1.02945 0.93942 0.78888 0.96837 0.96966 0.89109 0.91885 0.94511 0.91615 0.74690 0.83724 0.83644 0.80503 0.76740 0.87229 0.89898 0.88703 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.47 13.06 21.65 0.28 -57.18 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 46.01 29.55 68.60 2.03 48.03 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.73 -37.06 5.23 -343.43 -1.80 -38.86 16 10 C 0.19 7.77 6.15 86.38 0.53 8.30 16 11 C -0.14 -4.39 1.65 -52.18 -0.09 -4.48 16 12 C -0.08 -2.16 5.20 30.59 0.16 -2.00 16 13 C 0.14 3.94 5.49 86.38 0.47 4.41 16 14 N -0.72 -17.04 5.56 -463.06 -2.57 -19.62 16 15 C 0.51 13.72 7.82 87.66 0.69 14.40 16 16 O -0.57 -21.80 15.56 -3.02 -0.05 -21.85 16 17 C -0.05 -0.83 6.33 29.10 0.18 -0.64 16 18 C 0.20 4.56 6.95 138.13 0.96 5.52 16 19 N -0.51 -15.21 10.60 -188.13 -1.99 -17.21 16 20 C -0.07 -1.60 11.87 83.52 0.99 -0.61 16 21 C -0.04 -0.60 12.04 83.08 1.00 0.40 16 22 N -0.56 -8.85 6.15 -186.26 -1.15 -9.99 16 23 H 0.44 3.55 8.96 -92.71 -0.83 2.72 16 24 C -0.16 -4.41 9.87 30.60 0.30 -4.10 16 25 C -0.15 -3.88 9.58 30.60 0.29 -3.58 16 26 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.38 19.84 6.80 -92.71 -0.63 19.21 16 28 H 0.01 0.59 7.96 -2.39 -0.02 0.57 16 29 H 0.01 0.52 8.10 -2.39 -0.02 0.50 16 30 H 0.09 2.04 7.93 -2.39 -0.02 2.02 16 31 H 0.06 2.13 6.94 -2.39 -0.02 2.12 16 32 H 0.04 1.30 7.96 -2.39 -0.02 1.29 16 33 H 0.07 1.87 7.72 -2.39 -0.02 1.85 16 34 H 0.42 7.10 8.47 -92.71 -0.79 6.31 16 35 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.22 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.11 2.53 8.07 -2.39 -0.02 2.52 16 40 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.11 2.38 7.90 -2.39 -0.02 2.36 16 Total: -1.00 -82.15 357.09 0.36 -81.79 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -1.19 Total: 33.73 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 6.80 Total: 1.15 kcal Atomic # 7 Polarization: -135.63 SS G_CDS: -7.22 Total: -142.85 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -82.15 0.36 -81.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167528920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.393 kcal (2) G-P(sol) polarization free energy of solvation -82.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds