Wall clock time and date at job start Tue Mar 31 2020 03:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35958 * 117.00135 * 2 1 4 4 C 1.39418 * 119.82120 * 0.02562 * 3 2 1 5 5 C 1.38098 * 120.56853 * 179.69667 * 4 3 2 6 6 C 1.38715 * 120.20269 * 0.56022 * 5 4 3 7 7 N 1.38852 * 120.18374 * 179.72160 * 6 5 4 8 8 C 1.46498 * 120.00005 * 359.72281 * 7 6 5 9 9 H 1.08998 * 110.27163 * 32.91074 * 8 7 6 10 10 C 1.53999 * 110.31072 * 270.72189 * 8 7 6 11 11 N 1.47900 * 107.05811 * 239.85872 * 10 8 7 12 12 C 1.48535 * 105.82150 * 25.32572 * 11 10 8 13 13 C 1.54587 * 110.31218 * 155.00569 * 8 7 6 14 14 H 1.08999 * 110.72686 * 215.49706 * 13 8 7 15 15 C 1.53004 * 110.72209 * 338.59567 * 13 8 7 16 16 O 1.42903 * 109.47148 * 185.00221 * 15 13 8 17 17 C 1.41542 * 119.63813 * 359.44473 * 6 5 4 18 18 C 1.41021 * 120.28273 * 180.25428 * 17 6 5 19 19 H 1.08004 * 119.99872 * 333.63748 * 18 17 6 20 20 C 1.39900 * 120.00664 * 153.63440 * 18 17 6 21 21 N 1.30890 * 119.99576 * 344.01830 * 20 18 17 22 22 Si 1.86800 * 120.00304 * 164.01598 * 20 18 17 23 23 H 1.48498 * 109.47041 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46999 * 120.00025 * 22 20 18 25 25 H 1.48504 * 109.47104 * 239.99966 * 22 20 18 26 26 C 1.37841 * 119.81931 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46950 * 300.00044 * 1 2 3 28 28 H 1.09002 * 109.47152 * 59.99587 * 1 2 3 29 29 H 1.09001 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.71394 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.90016 * 180.28316 * 5 4 3 32 32 H 0.96997 * 120.00538 * 179.73056 * 7 6 5 33 33 H 1.09004 * 109.91173 * 359.20625 * 10 8 7 34 34 H 1.08992 * 109.92048 * 120.50472 * 10 8 7 35 35 H 1.00897 * 111.00212 * 145.84238 * 11 10 8 36 36 H 1.09000 * 110.66870 * 202.36144 * 12 11 10 37 37 H 1.09004 * 110.66768 * 79.22927 * 12 11 10 38 38 H 1.08996 * 109.47394 * 305.00326 * 15 13 8 39 39 H 1.09001 * 109.46498 * 65.00704 * 15 13 8 40 40 H 0.96704 * 114.00169 * 180.02562 * 16 15 13 41 41 H 0.97002 * 119.99881 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.11101 * 0.04571 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2833 2.3783 0.0005 5 6 1.8942 3.6168 0.0068 6 6 3.2780 3.7124 0.0010 7 7 3.8918 4.9579 0.0015 8 6 3.0775 6.1757 0.0021 9 1 2.1541 6.0123 0.5576 10 6 2.7652 6.6106 -1.4418 11 7 3.3261 7.9679 -1.6171 12 6 4.4329 8.0789 -0.6327 13 6 3.8716 7.3519 0.6151 14 1 3.2122 8.0081 1.1831 15 6 5.0093 6.8351 1.4981 16 8 5.6511 7.9377 2.1419 17 6 4.0611 2.5333 0.0005 18 6 5.4689 2.6146 0.0000 19 1 5.9595 3.4825 -0.4154 20 6 6.2302 1.5712 0.5375 21 7 5.6645 0.6795 1.3108 22 14 8.0539 1.4505 0.1515 23 1 8.4468 2.5725 -0.7385 24 1 8.8329 1.5244 1.4136 25 1 8.3319 0.1591 -0.5270 26 6 3.4230 1.2791 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2053 2.3130 0.0014 31 1 1.2927 4.5138 0.0118 32 1 4.8596 5.0217 0.0014 33 1 3.2321 5.9221 -2.1461 34 1 1.6868 6.6315 -1.5983 35 1 3.6647 8.1004 -2.5583 36 1 4.6433 9.1242 -0.4067 37 1 5.3272 7.5762 -1.0009 38 1 4.6058 6.1590 2.2519 39 1 5.7337 6.3021 0.8822 40 1 6.3844 7.6838 2.7189 41 1 6.1922 -0.0442 1.6832 42 1 4.0101 0.3727 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170781000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:34 Heat of formation + Delta-G solvation = -53.044376 kcal Electronic energy + Delta-G solvation = -24019.951638 eV Core-core repulsion = 20579.069590 eV Total energy + Delta-G solvation = -3440.882048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.42394 -38.48406 -36.67189 -36.14523 -33.80649 -32.96014 -30.58672 -29.80320 -28.52653 -27.18513 -25.60619 -25.01187 -24.74993 -21.62049 -21.03272 -20.29000 -19.00645 -17.74900 -17.48983 -16.31232 -16.19642 -15.97880 -15.36098 -14.79122 -14.71400 -14.60727 -14.45303 -13.87778 -13.61738 -13.20006 -13.08364 -12.59223 -12.29095 -12.17432 -11.78051 -11.63155 -11.52907 -11.44046 -11.19340 -11.12565 -11.04106 -10.77531 -10.64792 -10.52942 -10.22972 -10.02034 -9.78633 -9.36248 -9.17254 -8.58997 -8.31748 -7.44158 -6.76637 -6.03813 -4.25008 2.75081 3.06025 3.08850 3.12423 3.19811 3.91615 4.07126 4.36612 4.45333 4.61204 4.65711 4.78572 4.94252 5.27806 5.51844 5.54412 5.61560 5.64673 5.71851 5.73829 5.81034 5.91032 5.95636 5.96972 6.13763 6.18235 6.23685 6.29468 6.39936 6.78361 6.85020 6.95993 7.13412 7.36923 7.42122 7.50092 7.60613 7.69700 7.87249 8.02234 8.20866 8.55599 8.73346 8.82199 8.91766 9.07664 10.22745 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010791 B = 0.006519 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.153144 B = 4293.883551 C = 6226.752573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.332 6.332 3 C 0.093 3.907 4 C -0.275 4.275 5 C -0.146 4.146 6 C 0.091 3.909 7 N -0.743 5.743 8 C 0.159 3.841 9 H 0.084 0.916 10 C 0.022 3.978 11 N -0.674 5.674 12 C 0.048 3.952 13 C -0.096 4.096 14 H 0.092 0.908 15 C 0.087 3.913 16 O -0.578 6.578 17 C 0.099 3.901 18 C -0.463 4.463 19 H 0.072 0.928 20 C 0.077 3.923 21 N -0.791 5.791 22 Si 0.902 3.098 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.272 1.272 26 C -0.169 4.169 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.394 0.606 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.334 0.666 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.378 0.622 41 H 0.279 0.721 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.766 7.582 -1.299 7.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.246 6.246 3 C 0.049 3.951 4 C -0.296 4.296 5 C -0.169 4.169 6 C -0.007 4.007 7 N -0.380 5.380 8 C 0.050 3.950 9 H 0.102 0.898 10 C -0.110 4.110 11 N -0.303 5.303 12 C -0.081 4.081 13 C -0.116 4.116 14 H 0.111 0.889 15 C 0.009 3.991 16 O -0.384 6.384 17 C 0.094 3.906 18 C -0.494 4.494 19 H 0.090 0.910 20 C -0.141 4.141 21 N -0.416 5.416 22 Si 0.727 3.273 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.197 1.197 26 C -0.191 4.191 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.231 0.769 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.149 0.851 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.225 0.775 41 H 0.090 0.910 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.734 7.968 -1.107 8.496 hybrid contribution 1.942 -0.932 -0.214 2.165 sum -0.792 7.036 -1.321 7.203 Atomic orbital electron populations 1.22703 0.81174 1.01589 1.00284 1.85999 1.19109 1.29162 1.90367 1.18821 0.92406 0.82407 1.01443 1.20202 0.96998 0.92156 1.20224 1.19808 0.92258 0.95712 1.09162 1.17826 0.91056 0.85037 1.06804 1.44110 1.07135 1.01112 1.85626 1.21387 0.94940 0.84642 0.94018 0.89826 1.23357 1.00481 0.88971 0.98145 1.63103 1.30625 1.28188 1.08369 1.23015 0.92492 1.00709 0.91903 1.22285 0.96680 0.97093 0.95519 0.88937 1.22100 0.93945 0.87800 0.95276 1.86411 1.51709 1.34968 1.65285 1.16939 0.92719 0.88515 0.92385 1.19097 0.90791 1.03727 1.35739 0.91008 1.25785 1.00599 0.94797 0.92878 1.69862 1.38041 1.11595 1.22150 0.86369 0.82573 0.79331 0.79041 1.18688 1.20163 1.19744 1.20317 0.89263 0.98599 1.10888 0.93898 0.93956 0.90164 0.88899 0.88987 0.76900 0.92868 0.90568 0.85123 0.90086 0.94137 0.92429 0.93296 0.77533 0.91022 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.81 101.05 0.99 1.63 16 2 O -0.33 -7.45 10.49 -19.61 -0.21 -7.65 16 3 C 0.09 2.27 6.67 -39.29 -0.26 2.01 16 4 C -0.28 -6.13 9.03 -39.19 -0.35 -6.49 16 5 C -0.15 -3.17 9.19 -39.46 -0.36 -3.53 16 6 C 0.09 2.05 6.68 -83.25 -0.56 1.49 16 7 N -0.74 -13.97 4.47 -50.41 -0.23 -14.20 16 8 C 0.16 2.51 2.93 -66.58 -0.19 2.32 16 9 H 0.08 1.37 6.39 -51.93 -0.33 1.04 16 10 C 0.02 0.32 7.32 -2.75 -0.02 0.30 16 11 N -0.67 -8.94 7.51 -110.08 -0.83 -9.77 16 12 C 0.05 0.64 6.94 -1.90 -0.01 0.63 16 13 C -0.10 -1.37 3.29 -88.76 -0.29 -1.66 16 14 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 15 C 0.09 1.24 5.50 37.16 0.20 1.44 16 16 O -0.58 -7.55 13.60 -35.23 -0.48 -8.03 16 17 C 0.10 2.51 5.57 -106.65 -0.59 1.92 16 18 C -0.46 -11.51 8.48 -37.91 -0.32 -11.83 16 19 H 0.07 1.69 6.71 -52.48 -0.35 1.34 16 20 C 0.08 1.87 5.16 -17.33 -0.09 1.78 16 21 N -0.79 -20.28 10.97 55.55 0.61 -19.67 16 22 Si 0.90 18.22 29.59 -169.99 -5.03 13.19 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C -0.17 -4.47 8.59 -38.79 -0.33 -4.80 16 27 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 28 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.84 6.26 -52.49 -0.33 1.51 16 31 H 0.09 1.78 6.18 -52.49 -0.32 1.45 16 32 H 0.39 7.45 4.79 -40.82 -0.20 7.25 16 33 H 0.05 0.86 7.92 -51.93 -0.41 0.45 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.33 3.89 8.92 -39.29 -0.35 3.54 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.04 0.55 7.94 -51.93 -0.41 0.14 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.72 6.45 -51.93 -0.33 0.38 16 40 H 0.38 3.40 9.12 45.56 0.42 3.81 16 41 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 42 H 0.13 3.50 6.23 -52.49 -0.33 3.18 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -28.43 334.32 -8.31 -36.75 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -5.00 Total: 19.13 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -2.20 Total: -14.79 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -0.44 Total: -43.63 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.68 Total: -15.69 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.43 -8.31 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170781000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.297 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds