Wall clock time and date at job start Tue Mar 31 2020 03:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35958 * 117.00135 * 2 1 4 4 C 1.39418 * 119.82120 * 0.02562 * 3 2 1 5 5 C 1.38098 * 120.56853 * 179.69667 * 4 3 2 6 6 C 1.38715 * 120.20269 * 0.56022 * 5 4 3 7 7 N 1.38852 * 120.18374 * 179.72160 * 6 5 4 8 8 C 1.46498 * 120.00005 * 359.72281 * 7 6 5 9 9 H 1.08998 * 110.27163 * 32.91074 * 8 7 6 10 10 C 1.53999 * 110.31072 * 270.72189 * 8 7 6 11 11 N 1.47900 * 107.05811 * 239.85872 * 10 8 7 12 12 C 1.48535 * 105.82150 * 25.32572 * 11 10 8 13 13 C 1.54587 * 110.31218 * 155.00569 * 8 7 6 14 14 H 1.08999 * 110.72686 * 215.49706 * 13 8 7 15 15 C 1.53004 * 110.72209 * 338.59567 * 13 8 7 16 16 O 1.42903 * 109.47148 * 185.00221 * 15 13 8 17 17 C 1.41542 * 119.63813 * 359.44473 * 6 5 4 18 18 C 1.41021 * 120.28273 * 180.25428 * 17 6 5 19 19 H 1.08004 * 119.99872 * 333.63748 * 18 17 6 20 20 C 1.39900 * 120.00664 * 153.63440 * 18 17 6 21 21 N 1.30890 * 119.99576 * 344.01830 * 20 18 17 22 22 Si 1.86800 * 120.00304 * 164.01598 * 20 18 17 23 23 H 1.48498 * 109.47041 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46999 * 120.00025 * 22 20 18 25 25 H 1.48504 * 109.47104 * 239.99966 * 22 20 18 26 26 C 1.37841 * 119.81931 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46950 * 300.00044 * 1 2 3 28 28 H 1.09002 * 109.47152 * 59.99587 * 1 2 3 29 29 H 1.09001 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.71394 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.90016 * 180.28316 * 5 4 3 32 32 H 0.96997 * 120.00538 * 179.73056 * 7 6 5 33 33 H 1.09004 * 109.91173 * 359.20625 * 10 8 7 34 34 H 1.08992 * 109.92048 * 120.50472 * 10 8 7 35 35 H 1.00897 * 111.00212 * 145.84238 * 11 10 8 36 36 H 1.09000 * 110.66870 * 202.36144 * 12 11 10 37 37 H 1.09004 * 110.66768 * 79.22927 * 12 11 10 38 38 H 1.08996 * 109.47394 * 305.00326 * 15 13 8 39 39 H 1.09001 * 109.46498 * 65.00704 * 15 13 8 40 40 H 0.96704 * 114.00169 * 180.02562 * 16 15 13 41 41 H 0.97002 * 119.99881 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.11101 * 0.04571 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2833 2.3783 0.0005 5 6 1.8942 3.6168 0.0068 6 6 3.2780 3.7124 0.0010 7 7 3.8918 4.9579 0.0015 8 6 3.0775 6.1757 0.0021 9 1 2.1541 6.0123 0.5576 10 6 2.7652 6.6106 -1.4418 11 7 3.3261 7.9679 -1.6171 12 6 4.4329 8.0789 -0.6327 13 6 3.8716 7.3519 0.6151 14 1 3.2122 8.0081 1.1831 15 6 5.0093 6.8351 1.4981 16 8 5.6511 7.9377 2.1419 17 6 4.0611 2.5333 0.0005 18 6 5.4689 2.6146 0.0000 19 1 5.9595 3.4825 -0.4154 20 6 6.2302 1.5712 0.5375 21 7 5.6645 0.6795 1.3108 22 14 8.0539 1.4505 0.1515 23 1 8.4468 2.5725 -0.7385 24 1 8.8329 1.5244 1.4136 25 1 8.3319 0.1591 -0.5270 26 6 3.4230 1.2791 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2053 2.3130 0.0014 31 1 1.2927 4.5138 0.0118 32 1 4.8596 5.0217 0.0014 33 1 3.2321 5.9221 -2.1461 34 1 1.6868 6.6315 -1.5983 35 1 3.6647 8.1004 -2.5583 36 1 4.6433 9.1242 -0.4067 37 1 5.3272 7.5762 -1.0009 38 1 4.6058 6.1590 2.2519 39 1 5.7337 6.3021 0.8822 40 1 6.3844 7.6838 2.7189 41 1 6.1922 -0.0442 1.6832 42 1 4.0101 0.3727 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170781000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:33 Heat of formation + Delta-G solvation = -74.932984 kcal Electronic energy + Delta-G solvation = -24020.900800 eV Core-core repulsion = 20579.069590 eV Total energy + Delta-G solvation = -3441.831210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.82029 -40.04277 -38.24967 -37.27234 -35.51881 -34.53292 -31.81697 -31.58710 -29.99257 -28.60595 -27.14325 -26.79124 -25.88795 -23.21628 -22.36327 -21.90907 -20.36955 -19.45607 -18.78706 -17.88470 -17.50486 -17.38461 -16.86550 -16.40252 -16.24767 -16.01756 -15.80407 -15.15857 -14.89465 -14.80418 -14.31572 -14.22284 -13.80772 -13.70055 -13.25398 -13.13364 -12.97762 -12.79988 -12.79823 -12.59267 -12.46444 -12.20805 -11.99460 -11.83985 -11.76867 -11.73375 -11.12530 -10.98000 -10.86561 -10.09610 -9.51957 -9.30534 -8.58606 -7.76412 -6.11210 0.99374 1.32768 1.38942 1.51073 1.52181 2.21846 2.74150 2.85074 2.92926 3.18282 3.46734 3.63874 3.70067 3.87475 4.16705 4.24511 4.38219 4.42955 4.46968 4.50705 4.55554 4.57116 4.60534 4.75292 4.77930 4.82455 4.99734 5.06007 5.10005 5.14627 5.15887 5.30671 5.57930 5.68004 5.75962 5.86017 6.02550 6.21793 6.37033 6.38513 6.80070 6.83210 6.97235 7.04443 7.21612 7.33019 8.43369 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010791 B = 0.006519 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.153144 B = 4293.883551 C = 6226.752573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.079 3.921 4 C -0.270 4.270 5 C -0.152 4.152 6 C 0.094 3.906 7 N -0.737 5.737 8 C 0.155 3.845 9 H 0.082 0.918 10 C 0.029 3.971 11 N -0.669 5.669 12 C 0.053 3.947 13 C -0.092 4.092 14 H 0.097 0.903 15 C 0.095 3.905 16 O -0.583 6.583 17 C 0.068 3.932 18 C -0.483 4.483 19 H 0.078 0.922 20 C 0.034 3.966 21 N -0.830 5.830 22 Si 0.973 3.027 23 H -0.255 1.255 24 H -0.269 1.269 25 H -0.274 1.274 26 C -0.202 4.202 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.392 0.608 33 H 0.037 0.963 34 H 0.084 0.916 35 H 0.345 0.655 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.396 0.604 41 H 0.282 0.718 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 9.394 -1.670 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.034 3.966 4 C -0.290 4.290 5 C -0.175 4.175 6 C -0.005 4.005 7 N -0.372 5.372 8 C 0.048 3.952 9 H 0.100 0.900 10 C -0.102 4.102 11 N -0.299 5.299 12 C -0.076 4.076 13 C -0.111 4.111 14 H 0.115 0.885 15 C 0.016 3.984 16 O -0.391 6.391 17 C 0.064 3.936 18 C -0.514 4.514 19 H 0.096 0.904 20 C -0.180 4.180 21 N -0.457 5.457 22 Si 0.795 3.205 23 H -0.178 1.178 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.224 4.224 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.229 0.771 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.162 0.838 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.245 0.755 41 H 0.092 0.908 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.133 9.817 -1.479 10.411 hybrid contribution 1.937 -1.457 -0.077 2.424 sum -1.196 8.361 -1.557 8.588 Atomic orbital electron populations 1.23061 0.78108 1.04145 1.01198 1.85952 1.22334 1.28637 1.90318 1.18919 0.92137 0.83799 1.01728 1.20529 0.98351 0.91578 1.18535 1.20127 0.92171 0.96655 1.08578 1.17930 0.91514 0.85648 1.05442 1.44138 1.07307 1.00912 1.84876 1.21545 0.94692 0.83901 0.95053 0.90012 1.23207 1.00911 0.89385 0.96676 1.63114 1.30716 1.26853 1.09205 1.22990 0.92278 1.01086 0.91293 1.22247 0.96577 0.96352 0.95973 0.88495 1.21901 0.93865 0.87812 0.94789 1.86369 1.52551 1.34488 1.65674 1.17259 0.93571 0.89337 0.93456 1.19335 0.91109 1.04541 1.36388 0.90375 1.26621 1.04976 0.94154 0.92250 1.69961 1.39851 1.12435 1.23411 0.85292 0.77032 0.79190 0.78990 1.17788 1.19374 1.19921 1.20265 0.90436 0.98118 1.13532 0.93087 0.92701 0.87002 0.86106 0.86221 0.77072 0.94419 0.89756 0.83847 0.89067 0.94344 0.94055 0.93865 0.75470 0.90764 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.81 113.37 1.11 2.04 16 2 O -0.36 -16.17 10.49 -93.08 -0.98 -17.15 16 3 C 0.08 3.90 6.67 22.46 0.15 4.05 16 4 C -0.27 -11.75 9.03 22.52 0.20 -11.54 16 5 C -0.15 -6.41 9.19 22.35 0.21 -6.20 16 6 C 0.09 4.26 6.68 38.96 0.26 4.52 16 7 N -0.74 -27.33 4.47 -313.41 -1.40 -28.73 16 8 C 0.16 4.67 2.93 45.87 0.13 4.81 16 9 H 0.08 2.51 6.39 -2.39 -0.02 2.50 16 10 C 0.03 0.81 7.32 86.45 0.63 1.44 16 11 N -0.67 -16.06 7.51 -502.19 -3.77 -19.83 16 12 C 0.05 1.28 6.94 86.65 0.60 1.88 16 13 C -0.09 -2.45 3.29 -9.59 -0.03 -2.48 16 14 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 15 C 0.09 2.59 5.50 71.98 0.40 2.99 16 16 O -0.58 -14.10 13.60 -148.98 -2.03 -16.13 16 17 C 0.07 3.58 5.57 -21.18 -0.12 3.46 16 18 C -0.48 -24.69 8.48 23.36 0.20 -24.49 16 19 H 0.08 3.74 6.71 -2.91 -0.02 3.72 16 20 C 0.03 1.69 5.16 85.24 0.44 2.13 16 21 N -0.83 -44.41 10.97 21.82 0.24 -44.17 16 22 Si 0.97 38.01 29.59 68.60 2.03 40.04 16 23 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 25 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 26 C -0.20 -11.13 8.59 22.78 0.20 -10.93 16 27 H 0.05 1.51 7.65 -2.39 -0.02 1.49 16 28 H 0.05 1.58 7.65 -2.39 -0.02 1.56 16 29 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.12 4.48 6.26 -2.91 -0.02 4.47 16 31 H 0.12 4.32 6.18 -2.91 -0.02 4.30 16 32 H 0.39 14.77 4.79 -92.71 -0.44 14.33 16 33 H 0.04 1.16 7.92 -2.38 -0.02 1.14 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.35 7.17 8.92 -89.70 -0.80 6.37 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.04 0.96 7.94 -2.38 -0.02 0.94 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.04 1.23 6.45 -2.39 -0.02 1.21 16 40 H 0.40 6.37 9.12 -74.05 -0.68 5.70 16 41 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 42 H 0.10 5.72 6.23 -2.91 -0.02 5.71 16 Total: -1.00 -62.77 334.32 -2.37 -65.14 By element: Atomic # 1 Polarization: 49.99 SS G_CDS: -0.84 Total: 49.15 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 4.38 Total: -28.33 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -4.93 Total: -92.73 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -3.00 Total: -33.27 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -62.77 -2.37 -65.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170781000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.794 kcal (2) G-P(sol) polarization free energy of solvation -62.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds