Wall clock time and date at job start Tue Mar 31 2020 03:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99874 * 2 1 4 4 H 1.09002 * 109.47259 * 30.00319 * 3 2 1 5 5 C 1.50699 * 109.46964 * 150.00106 * 3 2 1 6 6 O 1.21280 * 119.99966 * 5.00002 * 5 3 2 7 7 N 1.34774 * 120.00093 * 184.99640 * 5 3 2 8 8 C 1.46500 * 120.00022 * 180.02562 * 7 5 3 9 9 C 1.53001 * 109.47078 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.47280 * 180.02562 * 9 8 7 11 11 N 1.46501 * 109.47237 * 179.97438 * 10 9 8 12 12 C 1.36937 * 120.00070 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99484 * 0.02562 * 12 11 10 14 14 C 1.38807 * 120.00222 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99862 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00067 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47032 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46891 * 120.00112 * 16 14 12 19 19 H 1.48495 * 109.47257 * 239.99937 * 16 14 12 20 20 C 1.50703 * 109.47171 * 270.00168 * 3 2 1 21 21 C 1.38236 * 119.99787 * 324.72807 * 20 3 2 22 22 C 1.38241 * 119.99636 * 179.81278 * 21 20 3 23 23 C 1.38234 * 120.00115 * 0.39672 * 22 21 20 24 24 C 1.38240 * 119.99714 * 359.85290 * 23 22 21 25 25 C 1.38228 * 120.00011 * 145.00451 * 20 3 2 26 26 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47082 * 300.00110 * 1 2 3 28 28 H 1.08997 * 109.47374 * 59.99540 * 1 2 3 29 29 H 0.96999 * 119.99866 * 0.02562 * 7 5 3 30 30 H 1.08999 * 109.47229 * 300.00134 * 8 7 5 31 31 H 1.08996 * 109.47573 * 60.00199 * 8 7 5 32 32 H 1.09008 * 109.46996 * 299.99836 * 9 8 7 33 33 H 1.08997 * 109.47507 * 59.99882 * 9 8 7 34 34 H 1.09008 * 109.46873 * 299.99790 * 10 9 8 35 35 H 1.08997 * 109.47047 * 59.99479 * 10 9 8 36 36 H 0.96998 * 120.00102 * 0.02562 * 11 10 9 37 37 H 0.96996 * 119.99974 * 180.02562 * 15 14 12 38 38 H 1.07996 * 120.00216 * 359.97438 * 21 20 3 39 39 H 1.08000 * 119.99857 * 180.22806 * 22 21 20 40 40 H 1.07998 * 120.00030 * 179.84064 * 23 22 21 41 41 H 1.08003 * 119.99655 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.00508 * 359.97379 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 3.3386 1.2639 0.7104 6 8 3.7897 0.2045 1.0913 7 7 4.0255 2.4039 0.9223 8 6 5.3171 2.3634 1.6124 9 6 5.8810 3.7814 1.7228 10 6 7.2303 3.7391 2.4430 11 7 7.7705 5.0968 2.5482 12 6 8.9774 5.3080 3.1597 13 1 9.5312 4.4735 3.5641 14 6 9.4896 6.5943 3.2589 15 7 8.8149 7.6111 2.7656 16 14 11.1362 6.8823 4.0926 17 1 11.6889 5.5850 4.5581 18 1 12.0781 7.5031 3.1267 19 1 10.9510 7.7877 5.2549 20 6 2.2145 1.7644 -1.4208 21 6 2.5649 0.8519 -2.3983 22 6 2.7485 1.2722 -3.7024 23 6 2.5897 2.6064 -4.0273 24 6 2.2443 3.5197 -3.0488 25 6 2.0570 3.0987 -1.7455 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 3.6646 3.2513 0.6179 30 1 5.1827 1.9475 2.6109 31 1 6.0106 1.7391 1.0491 32 1 6.0154 4.1978 0.7244 33 1 5.1874 4.4055 2.2864 34 1 7.0963 3.3226 3.4414 35 1 7.9237 3.1152 1.8791 36 1 7.2730 5.8462 2.1853 37 1 9.1730 8.5099 2.8346 38 1 2.6927 -0.1898 -2.1436 39 1 3.0187 0.5587 -4.4667 40 1 2.7357 2.9352 -5.0457 41 1 2.1206 4.5622 -3.3027 42 1 1.7872 3.8124 -0.9811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171624628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:24 Heat of formation + Delta-G solvation = -47.943776 kcal Electronic energy + Delta-G solvation = -22505.818047 eV Core-core repulsion = 19065.157177 eV Total energy + Delta-G solvation = -3440.660870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.55083 -38.96630 -37.67289 -35.96658 -34.36847 -32.64157 -31.73273 -31.16927 -29.62992 -28.10499 -26.29936 -24.89580 -22.85765 -22.76343 -21.94368 -21.21401 -20.30165 -17.76581 -17.44483 -17.06877 -16.87693 -16.14085 -15.63786 -15.42936 -14.94939 -14.81400 -14.73242 -14.31530 -14.20760 -13.66723 -13.42765 -13.28382 -13.06478 -12.99520 -12.69613 -12.33038 -11.84893 -11.66406 -11.55022 -11.27789 -10.96323 -10.93241 -10.78207 -10.62830 -10.39670 -10.05056 -9.85155 -9.70639 -9.20421 -9.09352 -8.98279 -8.88749 -6.93758 -5.77752 -3.06559 0.95339 1.12637 2.50671 2.70737 3.42665 3.43486 3.49304 3.51588 3.82999 4.26015 4.52214 4.58825 4.62256 4.72835 4.75887 4.86924 5.04015 5.05294 5.12896 5.19834 5.30463 5.31401 5.35977 5.57312 5.61585 5.62554 5.75780 5.97296 6.06144 6.13730 6.18066 6.18878 6.24325 6.31531 6.41089 6.67932 6.70070 6.78836 6.82997 7.42245 7.70563 8.13481 8.41313 9.52542 10.09519 10.44266 11.45387 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020942 B = 0.002733 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.699933 B =10241.492384 C =11068.406128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.115 3.885 4 H 0.094 0.906 5 C 0.518 3.482 6 O -0.518 6.518 7 N -0.722 5.722 8 C 0.124 3.876 9 C -0.137 4.137 10 C 0.156 3.844 11 N -0.734 5.734 12 C -0.239 4.239 13 H 0.072 0.928 14 C -0.015 4.015 15 N -0.934 5.934 16 Si 0.908 3.092 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.118 4.118 21 C -0.087 4.087 22 C -0.122 4.122 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.109 4.109 26 H 0.092 0.908 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.400 0.600 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.663 -11.273 -12.334 26.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C 0.054 3.946 4 H 0.112 0.888 5 C 0.302 3.698 6 O -0.393 6.393 7 N -0.375 5.375 8 C 0.001 3.999 9 C -0.175 4.175 10 C 0.028 3.972 11 N -0.378 5.378 12 C -0.370 4.370 13 H 0.090 0.910 14 C -0.211 4.211 15 N -0.583 5.583 16 Si 0.739 3.261 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.119 4.119 21 C -0.105 4.105 22 C -0.140 4.140 23 C -0.131 4.131 24 C -0.137 4.137 25 C -0.128 4.128 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.234 0.766 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.052 -12.281 -11.946 26.375 hybrid contribution 0.359 1.227 0.108 1.283 sum -19.693 -11.054 -11.838 25.498 Atomic orbital electron populations 1.22908 0.80423 1.03331 1.00214 1.88045 1.19836 1.24341 1.94668 1.20729 0.94216 0.87145 0.92556 0.88804 1.20068 0.85812 0.84379 0.79569 1.90731 1.68887 1.29646 1.50009 1.45940 1.22294 1.09153 1.60076 1.21385 0.83025 0.98322 0.97202 1.21946 0.98865 0.94696 1.02042 1.20521 0.90881 0.89176 0.96602 1.42345 1.22714 1.02371 1.70387 1.19296 0.95802 0.92712 1.29172 0.91032 1.24751 0.99029 0.95603 1.01728 1.69669 1.38891 0.98578 1.51207 0.86095 0.83569 0.77681 0.78746 1.20495 1.21845 1.21841 1.20045 1.02828 0.94278 0.94737 1.21046 0.96863 1.00150 0.92417 1.21208 1.00206 0.96131 0.96419 1.21254 0.98825 0.93444 0.99580 1.21139 0.99784 0.99847 0.92894 1.21010 1.00110 0.94586 0.97055 0.88994 0.93668 0.93715 0.76627 0.91170 0.91238 0.91258 0.91265 0.96002 0.96010 0.78309 0.93567 0.85267 0.85823 0.85905 0.85601 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.81 101.05 1.09 1.30 16 2 O -0.35 -4.05 9.04 -55.09 -0.50 -4.55 16 3 C 0.12 1.20 2.73 -29.03 -0.08 1.12 16 4 H 0.09 0.72 7.70 -51.93 -0.40 0.32 16 5 C 0.52 7.04 7.17 -10.99 -0.08 6.96 16 6 O -0.52 -9.26 16.51 -14.30 -0.24 -9.50 16 7 N -0.72 -8.70 5.51 -60.30 -0.33 -9.03 16 8 C 0.12 1.73 5.67 -4.04 -0.02 1.71 16 9 C -0.14 -2.11 5.44 -26.73 -0.15 -2.25 16 10 C 0.16 3.14 6.26 -4.04 -0.03 3.11 16 11 N -0.73 -18.74 5.60 -59.91 -0.34 -19.07 16 12 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 13 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 14 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 15 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 16 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 C -0.12 -1.16 4.91 -104.62 -0.51 -1.67 16 21 C -0.09 -0.90 9.35 -39.58 -0.37 -1.27 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 23 C -0.11 -0.92 10.05 -39.58 -0.40 -1.32 16 24 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.11 -0.90 9.52 -39.59 -0.38 -1.28 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.40 3.81 8.31 -40.82 -0.34 3.47 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.38 10.15 7.67 -40.82 -0.31 9.83 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.13 1.41 7.64 -52.49 -0.40 1.01 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 42 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -34.87 360.98 -8.71 -43.58 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.49 Total: 7.09 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.96 Total: -3.88 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.06 Total: -55.71 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.73 Total: -14.04 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.87 -8.71 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171624628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.365 kcal (2) G-P(sol) polarization free energy of solvation -34.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds