Wall clock time and date at job start Tue Mar 31 2020 02:48:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38268 * 119.94321 * 2 1
4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1
5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2
6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3
7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4
8 8 C 1.50694 * 109.46937 * 180.02562 * 7 6 5
9 9 O 1.21277 * 120.00384 * 0.02562 * 8 7 6
10 10 N 1.34782 * 119.99926 * 180.02562 * 8 7 6
11 11 C 1.46500 * 120.00085 * 180.02562 * 10 8 7
12 12 C 1.52998 * 109.47293 * 179.97438 * 11 10 8
13 13 C 1.52998 * 109.47242 * 180.02562 * 12 11 10
14 14 N 1.46498 * 109.47214 * 180.02562 * 13 12 11
15 15 C 1.36935 * 120.00020 * 180.02562 * 14 13 12
16 16 H 1.08003 * 120.00466 * 359.97438 * 15 14 13
17 17 C 1.38813 * 120.00106 * 180.02562 * 15 14 13
18 18 N 1.31615 * 119.99968 * 359.97438 * 17 15 14
19 19 Si 1.86803 * 120.00296 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.47090 * 89.99523 * 19 17 15
21 21 H 1.48502 * 109.47196 * 209.99969 * 19 17 15
22 22 H 1.48504 * 109.46768 * 329.99754 * 19 17 15
23 23 C 1.38723 * 119.88799 * 0.25807 * 5 4 3
24 24 C 1.38145 * 119.94323 * 359.49123 * 23 5 4
25 25 H 1.08999 * 109.46991 * 90.00243 * 1 2 3
26 26 H 1.09001 * 109.46891 * 210.00393 * 1 2 3
27 27 H 1.08994 * 109.47121 * 330.00356 * 1 2 3
28 28 H 1.08008 * 119.97007 * 359.94743 * 3 2 1
29 29 H 1.08001 * 120.02451 * 179.97438 * 4 3 2
30 30 H 1.08999 * 109.47144 * 300.00205 * 7 6 5
31 31 H 1.08998 * 109.47043 * 59.99803 * 7 6 5
32 32 H 0.96995 * 119.99933 * 359.97438 * 10 8 7
33 33 H 1.09004 * 109.47158 * 300.00442 * 11 10 8
34 34 H 1.09006 * 109.47300 * 60.00112 * 11 10 8
35 35 H 1.08999 * 109.47046 * 300.00119 * 12 11 10
36 36 H 1.08996 * 109.47254 * 60.00023 * 12 11 10
37 37 H 1.08999 * 109.47084 * 299.99957 * 13 12 11
38 38 H 1.08998 * 109.47592 * 59.99855 * 13 12 11
39 39 H 0.97005 * 119.99895 * 359.97438 * 14 13 12
40 40 H 0.96997 * 120.00628 * 180.02562 * 18 17 15
41 41 H 1.08001 * 120.02769 * 179.72249 * 23 5 4
42 42 H 1.08006 * 119.97076 * 180.25587 * 24 23 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1972 1.1981 0.0000
4 6 3.5786 1.2008 0.0005
5 6 4.2735 0.0000 0.0016
6 8 5.6325 0.0001 0.0016
7 6 6.2813 -1.2731 0.0022
8 6 7.7752 -1.0756 0.0027
9 8 8.2388 0.0451 0.0031
10 7 8.5963 -2.1445 0.0028
11 6 10.0486 -1.9525 0.0039
12 6 10.7433 -3.3157 0.0044
13 6 12.2601 -3.1152 0.0062
14 7 12.9252 -4.4205 0.0060
15 6 14.2927 -4.4921 0.0080
16 1 14.8809 -3.5863 0.0093
17 6 14.9229 -5.7289 0.0073
18 7 14.2062 -6.8327 0.0053
19 14 16.7884 -5.8267 0.0093
20 1 17.2812 -5.8540 1.4099
21 1 17.2201 -7.0626 -0.6916
22 1 17.3469 -4.6409 -0.6889
23 6 3.5787 -1.2007 -0.0033
24 6 2.1973 -1.1980 0.0014
25 1 -0.3633 0.0000 -1.0277
26 1 -0.3633 -0.8900 0.5139
27 1 -0.3633 0.8900 0.5137
28 1 1.6558 2.1327 -0.0009
29 1 4.1172 2.1370 0.0001
30 1 5.9884 -1.8297 0.8924
31 1 5.9884 -1.8305 -0.8875
32 1 8.2256 -3.0408 0.0029
33 1 10.3421 -1.3950 -0.8856
34 1 10.3409 -1.3959 0.8944
35 1 10.4497 -3.8727 0.8941
36 1 10.4511 -3.8727 -0.8858
37 1 12.5540 -2.5580 -0.8833
38 1 12.5520 -2.5584 0.8966
39 1 12.3969 -5.2340 0.0053
40 1 14.6465 -7.6970 0.0052
41 1 4.1174 -2.1367 -0.0070
42 1 1.6559 -2.1326 0.0018
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001175423190.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:58
Heat of formation + Delta-G solvation = -47.463737 kcal
Electronic energy + Delta-G solvation = -21347.932664 eV
Core-core repulsion = 17907.292610 eV
Total energy + Delta-G solvation = -3440.640054 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.157 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.71499 -39.59102 -37.85545 -36.05881 -34.41622 -32.49222 -32.08281 -31.42575
-30.10019 -28.59942 -26.49985 -25.08074 -23.28526 -22.56456 -21.60852 -21.29488
-20.42053 -18.68869 -17.56210 -16.91528 -16.72777 -16.23382 -15.79946 -15.53612
-15.45932 -14.65234 -14.58265 -14.35892 -14.00350 -13.92881 -13.85959 -13.30493
-13.12202 -12.97732 -12.72566 -12.45412 -12.29059 -11.91104 -11.70440 -11.23723
-11.23121 -11.00065 -10.94900 -10.80963 -10.65910 -10.13119 -9.96210 -9.72362
-9.38017 -9.19020 -8.90172 -8.41170 -6.96039 -5.79468 -3.08500 0.96436
1.04543 2.30302 2.38510 3.37363 3.42479 3.42850 3.48180 3.49792
4.29293 4.45641 4.49560 4.55278 4.57201 4.64874 4.67213 4.88133
4.97061 5.05904 5.17040 5.22679 5.25290 5.34202 5.52900 5.55223
5.56629 5.66895 5.90329 5.91551 5.97741 6.00651 6.14067 6.23839
6.28016 6.30793 6.40204 6.75105 6.79275 6.99909 7.30320 7.68355
8.00677 8.39425 9.50704 10.07341 10.42002 11.43503
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.054474 B = 0.001782 C = 0.001729
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 513.884926 B =15708.745824 C =16186.277582
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.128 4.128
3 C -0.081 4.081
4 C -0.144 4.144
5 C 0.125 3.875
6 O -0.289 6.289
7 C 0.041 3.959
8 C 0.513 3.487
9 O -0.518 6.518
10 N -0.723 5.723
11 C 0.124 3.876
12 C -0.137 4.137
13 C 0.156 3.844
14 N -0.734 5.734
15 C -0.241 4.241
16 H 0.071 0.929
17 C -0.014 4.014
18 N -0.934 5.934
19 Si 0.909 3.091
20 H -0.289 1.289
21 H -0.291 1.291
22 H -0.281 1.281
23 C -0.207 4.207
24 C -0.080 4.080
25 H 0.067 0.933
26 H 0.064 0.936
27 H 0.064 0.936
28 H 0.129 0.871
29 H 0.133 0.867
30 H 0.093 0.907
31 H 0.093 0.907
32 H 0.402 0.598
33 H 0.071 0.929
34 H 0.071 0.929
35 H 0.069 0.931
36 H 0.069 0.931
37 H 0.022 0.978
38 H 0.022 0.978
39 H 0.383 0.617
40 H 0.255 0.745
41 H 0.129 0.871
42 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.056 11.543 -0.050 31.265
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.128 4.128
3 C -0.099 4.099
4 C -0.163 4.163
5 C 0.080 3.920
6 O -0.202 6.202
7 C -0.038 4.038
8 C 0.297 3.703
9 O -0.393 6.393
10 N -0.377 5.377
11 C 0.001 3.999
12 C -0.176 4.176
13 C 0.028 3.972
14 N -0.378 5.378
15 C -0.372 4.372
16 H 0.089 0.911
17 C -0.210 4.210
18 N -0.583 5.583
19 Si 0.740 3.260
20 H -0.217 1.217
21 H -0.217 1.217
22 H -0.207 1.207
23 C -0.226 4.226
24 C -0.098 4.098
25 H 0.086 0.914
26 H 0.083 0.917
27 H 0.083 0.917
28 H 0.147 0.853
29 H 0.151 0.849
30 H 0.111 0.889
31 H 0.111 0.889
32 H 0.236 0.764
33 H 0.089 0.911
34 H 0.089 0.911
35 H 0.088 0.912
36 H 0.088 0.912
37 H 0.040 0.960
38 H 0.040 0.960
39 H 0.217 0.783
40 H 0.065 0.935
41 H 0.147 0.853
42 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -28.383 12.588 -0.059 31.049
hybrid contribution 0.691 -1.209 0.010 1.393
sum -27.692 11.378 -0.049 29.939
Atomic orbital electron populations
1.20724 0.91044 1.02669 1.02186 1.19858 0.96284 0.93073 1.03576
1.20867 0.92880 0.97873 0.98244 1.20466 0.93736 0.96500 1.05606
1.19073 0.81966 0.94416 0.96587 1.86167 1.16209 1.29267 1.88509
1.22489 0.91401 0.85961 1.03919 1.19966 0.87622 0.85368 0.77381
1.90764 1.77237 1.23601 1.47704 1.45908 1.07511 1.08707 1.75528
1.21413 0.77285 0.98478 1.02768 1.21949 0.97528 0.95283 1.02812
1.20522 0.88444 0.89969 0.98301 1.42327 1.03958 1.01857 1.89644
1.19255 0.82776 0.92479 1.42731 0.91061 1.24750 0.97997 0.95323
1.02926 1.69654 1.34079 0.96775 1.57807 0.86162 0.85359 0.76967
0.77551 1.21671 1.21738 1.20700 1.21269 0.95518 0.96977 1.08795
1.20835 0.93224 0.97781 0.97967 0.91396 0.91692 0.91652 0.85314
0.84923 0.88879 0.88875 0.76360 0.91085 0.91097 0.91200 0.91193
0.95988 0.95990 0.78306 0.93501 0.85315 0.85723
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.53 10.01 36.01 0.36 -0.17 16
2 C -0.13 -0.93 5.88 -104.60 -0.62 -1.54 16
3 C -0.08 -0.62 9.69 -39.61 -0.38 -1.00 16
4 C -0.14 -1.36 9.99 -39.44 -0.39 -1.75 16
5 C 0.13 1.27 6.69 -39.22 -0.26 1.01 16
6 O -0.29 -3.45 9.67 -39.35 -0.38 -3.83 16
7 C 0.04 0.37 5.22 36.00 0.19 0.55 16
8 C 0.51 6.32 7.91 -10.99 -0.09 6.23 16
9 O -0.52 -8.90 16.50 -14.35 -0.24 -9.13 16
10 N -0.72 -7.69 5.56 -60.29 -0.33 -8.02 16
11 C 0.12 1.62 5.67 -4.04 -0.02 1.59 16
12 C -0.14 -2.01 5.44 -26.73 -0.15 -2.16 16
13 C 0.16 3.05 6.26 -4.04 -0.03 3.03 16
14 N -0.73 -18.47 5.60 -59.91 -0.34 -18.81 16
15 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16
16 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16
17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16
18 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16
19 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16
20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16
21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
23 C -0.21 -1.69 9.04 -39.44 -0.36 -2.05 16
24 C -0.08 -0.59 9.69 -39.61 -0.38 -0.97 16
25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
26 H 0.06 0.27 8.08 -51.93 -0.42 -0.15 16
27 H 0.06 0.27 8.08 -51.93 -0.42 -0.15 16
28 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16
29 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16
30 H 0.09 0.59 7.67 -51.93 -0.40 0.19 16
31 H 0.09 0.59 7.65 -51.93 -0.40 0.19 16
32 H 0.40 3.02 8.47 -40.82 -0.35 2.67 16
33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
39 H 0.38 10.01 7.67 -40.82 -0.31 9.70 16
40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
41 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16
42 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16
LS Contribution 359.48 15.07 5.42 5.42
Total: -1.00 -35.05 359.48 -8.94 -43.99
By element:
Atomic # 1 Polarization: 11.46 SS G_CDS: -6.40 Total: 5.06 kcal
Atomic # 6 Polarization: -2.28 SS G_CDS: -2.37 Total: -4.66 kcal
Atomic # 7 Polarization: -54.29 SS G_CDS: 0.05 Total: -54.23 kcal
Atomic # 8 Polarization: -12.34 SS G_CDS: -0.62 Total: -12.96 kcal
Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -35.05 -8.94 -43.99 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001175423190.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.474 kcal
(2) G-P(sol) polarization free energy of solvation -35.047 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.521 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.990 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.464 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds