Wall clock time and date at job start Tue Mar 31 2020 02:48:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38268 * 119.94321 * 2 1
4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1
5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2
6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3
7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4
8 8 C 1.50694 * 109.46937 * 180.02562 * 7 6 5
9 9 O 1.21277 * 120.00384 * 0.02562 * 8 7 6
10 10 N 1.34782 * 119.99926 * 180.02562 * 8 7 6
11 11 C 1.46500 * 120.00085 * 180.02562 * 10 8 7
12 12 C 1.52998 * 109.47293 * 179.97438 * 11 10 8
13 13 C 1.52998 * 109.47242 * 180.02562 * 12 11 10
14 14 N 1.46498 * 109.47214 * 180.02562 * 13 12 11
15 15 C 1.36935 * 120.00020 * 180.02562 * 14 13 12
16 16 H 1.08003 * 120.00466 * 359.97438 * 15 14 13
17 17 C 1.38813 * 120.00106 * 180.02562 * 15 14 13
18 18 N 1.31615 * 119.99968 * 359.97438 * 17 15 14
19 19 Si 1.86803 * 120.00296 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.47090 * 89.99523 * 19 17 15
21 21 H 1.48502 * 109.47196 * 209.99969 * 19 17 15
22 22 H 1.48504 * 109.46768 * 329.99754 * 19 17 15
23 23 C 1.38723 * 119.88799 * 0.25807 * 5 4 3
24 24 C 1.38145 * 119.94323 * 359.49123 * 23 5 4
25 25 H 1.08999 * 109.46991 * 90.00243 * 1 2 3
26 26 H 1.09001 * 109.46891 * 210.00393 * 1 2 3
27 27 H 1.08994 * 109.47121 * 330.00356 * 1 2 3
28 28 H 1.08008 * 119.97007 * 359.94743 * 3 2 1
29 29 H 1.08001 * 120.02451 * 179.97438 * 4 3 2
30 30 H 1.08999 * 109.47144 * 300.00205 * 7 6 5
31 31 H 1.08998 * 109.47043 * 59.99803 * 7 6 5
32 32 H 0.96995 * 119.99933 * 359.97438 * 10 8 7
33 33 H 1.09004 * 109.47158 * 300.00442 * 11 10 8
34 34 H 1.09006 * 109.47300 * 60.00112 * 11 10 8
35 35 H 1.08999 * 109.47046 * 300.00119 * 12 11 10
36 36 H 1.08996 * 109.47254 * 60.00023 * 12 11 10
37 37 H 1.08999 * 109.47084 * 299.99957 * 13 12 11
38 38 H 1.08998 * 109.47592 * 59.99855 * 13 12 11
39 39 H 0.97005 * 119.99895 * 359.97438 * 14 13 12
40 40 H 0.96997 * 120.00628 * 180.02562 * 18 17 15
41 41 H 1.08001 * 120.02769 * 179.72249 * 23 5 4
42 42 H 1.08006 * 119.97076 * 180.25587 * 24 23 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1972 1.1981 0.0000
4 6 3.5786 1.2008 0.0005
5 6 4.2735 0.0000 0.0016
6 8 5.6325 0.0001 0.0016
7 6 6.2813 -1.2731 0.0022
8 6 7.7752 -1.0756 0.0027
9 8 8.2388 0.0451 0.0031
10 7 8.5963 -2.1445 0.0028
11 6 10.0486 -1.9525 0.0039
12 6 10.7433 -3.3157 0.0044
13 6 12.2601 -3.1152 0.0062
14 7 12.9252 -4.4205 0.0060
15 6 14.2927 -4.4921 0.0080
16 1 14.8809 -3.5863 0.0093
17 6 14.9229 -5.7289 0.0073
18 7 14.2062 -6.8327 0.0053
19 14 16.7884 -5.8267 0.0093
20 1 17.2812 -5.8540 1.4099
21 1 17.2201 -7.0626 -0.6916
22 1 17.3469 -4.6409 -0.6889
23 6 3.5787 -1.2007 -0.0033
24 6 2.1973 -1.1980 0.0014
25 1 -0.3633 0.0000 -1.0277
26 1 -0.3633 -0.8900 0.5139
27 1 -0.3633 0.8900 0.5137
28 1 1.6558 2.1327 -0.0009
29 1 4.1172 2.1370 0.0001
30 1 5.9884 -1.8297 0.8924
31 1 5.9884 -1.8305 -0.8875
32 1 8.2256 -3.0408 0.0029
33 1 10.3421 -1.3950 -0.8856
34 1 10.3409 -1.3959 0.8944
35 1 10.4497 -3.8727 0.8941
36 1 10.4511 -3.8727 -0.8858
37 1 12.5540 -2.5580 -0.8833
38 1 12.5520 -2.5584 0.8966
39 1 12.3969 -5.2340 0.0053
40 1 14.6465 -7.6970 0.0052
41 1 4.1174 -2.1367 -0.0070
42 1 1.6559 -2.1326 0.0018
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001175423190.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:57
Heat of formation + Delta-G solvation = -70.669925 kcal
Electronic energy + Delta-G solvation = -21348.938960 eV
Core-core repulsion = 17907.292610 eV
Total energy + Delta-G solvation = -3441.646349 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.157 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.45820 -40.46900 -38.54603 -37.48702 -35.94974 -33.83710 -32.98951 -32.01817
-31.58229 -29.60800 -27.18170 -26.55988 -24.48737 -23.67860 -22.61059 -22.25110
-21.44410 -19.36875 -19.21103 -18.20525 -17.51722 -17.23536 -16.72626 -16.56004
-16.34899 -16.12237 -15.40349 -15.31491 -15.18248 -15.17208 -14.60939 -14.46306
-14.40664 -13.90630 -13.74701 -13.31559 -13.06331 -12.86725 -12.81998 -12.61061
-12.43638 -12.40874 -12.08437 -12.05726 -11.82999 -11.82296 -11.76667 -11.01650
-10.94969 -10.21328 -9.95869 -9.02280 -9.02088 -7.97187 -5.26167 0.38932
0.44182 1.44197 1.47620 1.49319 1.51026 1.58052 2.54220 2.65482
2.78983 3.36878 3.54245 3.75014 3.88057 3.94943 4.03583 4.04694
4.11684 4.11955 4.27743 4.38293 4.44451 4.47079 4.63822 4.71669
4.72299 4.84639 4.86919 4.90529 5.11581 5.17708 5.24305 5.31176
5.34921 5.36980 5.39760 5.48684 5.70085 5.84761 6.25620 6.32547
6.48851 7.11083 7.32422 8.07025 8.31026 9.26162
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.054474 B = 0.001782 C = 0.001729
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 513.884926 B =15708.745824 C =16186.277582
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.132 4.132
3 C -0.086 4.086
4 C -0.167 4.167
5 C 0.100 3.900
6 O -0.322 6.322
7 C 0.044 3.956
8 C 0.511 3.489
9 O -0.575 6.575
10 N -0.708 5.708
11 C 0.133 3.867
12 C -0.117 4.117
13 C 0.150 3.850
14 N -0.746 5.746
15 C -0.252 4.252
16 H 0.074 0.926
17 C -0.073 4.073
18 N -0.967 5.967
19 Si 0.974 3.026
20 H -0.286 1.286
21 H -0.293 1.293
22 H -0.271 1.271
23 C -0.208 4.208
24 C -0.087 4.087
25 H 0.075 0.925
26 H 0.074 0.926
27 H 0.072 0.928
28 H 0.147 0.853
29 H 0.125 0.875
30 H 0.124 0.876
31 H 0.124 0.876
32 H 0.421 0.579
33 H 0.063 0.937
34 H 0.062 0.938
35 H 0.077 0.923
36 H 0.077 0.923
37 H 0.021 0.979
38 H 0.021 0.979
39 H 0.376 0.624
40 H 0.252 0.748
41 H 0.152 0.848
42 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.666 10.917 -0.049 32.552
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.132 4.132
3 C -0.104 4.104
4 C -0.185 4.185
5 C 0.056 3.944
6 O -0.236 6.236
7 C -0.034 4.034
8 C 0.297 3.703
9 O -0.454 6.454
10 N -0.362 5.362
11 C 0.009 3.991
12 C -0.155 4.155
13 C 0.023 3.977
14 N -0.389 5.389
15 C -0.384 4.384
16 H 0.092 0.908
17 C -0.265 4.265
18 N -0.618 5.618
19 Si 0.803 3.197
20 H -0.213 1.213
21 H -0.220 1.220
22 H -0.196 1.196
23 C -0.226 4.226
24 C -0.104 4.104
25 H 0.093 0.907
26 H 0.093 0.907
27 H 0.091 0.909
28 H 0.164 0.836
29 H 0.143 0.857
30 H 0.141 0.859
31 H 0.141 0.859
32 H 0.258 0.742
33 H 0.081 0.919
34 H 0.081 0.919
35 H 0.096 0.904
36 H 0.096 0.904
37 H 0.039 0.961
38 H 0.039 0.961
39 H 0.208 0.792
40 H 0.061 0.939
41 H 0.169 0.831
42 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -30.025 11.961 -0.058 32.320
hybrid contribution 1.115 -0.962 0.010 1.472
sum -28.910 10.999 -0.048 30.932
Atomic orbital electron populations
1.20772 0.89243 1.03589 1.02911 1.20239 0.97709 0.92901 1.02387
1.21122 0.92285 0.99151 0.97869 1.20649 0.94714 0.96440 1.06728
1.19295 0.81420 0.95474 0.98250 1.86107 1.17350 1.30967 1.89178
1.22618 0.88422 0.85598 1.06734 1.20620 0.89240 0.84550 0.75898
1.90740 1.78423 1.25798 1.50418 1.45697 1.06363 1.09575 1.74561
1.21123 0.78726 0.97159 1.02074 1.21694 0.94081 0.96194 1.03569
1.20691 0.91443 0.87570 0.97980 1.42518 1.03321 1.03508 1.89562
1.19655 0.84412 0.92657 1.41643 0.90787 1.25562 1.02434 0.95100
1.03441 1.69795 1.35668 0.97041 1.59265 0.85136 0.80138 0.76965
0.77490 1.21316 1.21952 1.19592 1.21537 0.96046 0.97051 1.08015
1.21201 0.93149 0.98847 0.97240 0.90661 0.90672 0.90913 0.83559
0.85662 0.85865 0.85853 0.74158 0.91908 0.91918 0.90421 0.90415
0.96071 0.96054 0.79158 0.93885 0.83083 0.83393
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.79 10.01 71.24 0.71 -0.07 16
2 C -0.13 -1.67 5.88 -19.85 -0.12 -1.79 16
3 C -0.09 -1.26 9.69 22.25 0.22 -1.04 16
4 C -0.17 -3.19 9.99 22.36 0.22 -2.96 16
5 C 0.10 2.00 6.69 22.50 0.15 2.15 16
6 O -0.32 -7.64 9.67 -73.44 -0.71 -8.35 16
7 C 0.04 0.71 5.22 71.23 0.37 1.08 16
8 C 0.51 12.15 7.91 87.65 0.69 12.85 16
9 O -0.57 -20.12 16.50 16.02 0.26 -19.86 16
10 N -0.71 -13.86 5.56 -463.06 -2.57 -16.43 16
11 C 0.13 3.36 5.67 86.38 0.49 3.85 16
12 C -0.12 -3.27 5.44 30.59 0.17 -3.10 16
13 C 0.15 5.81 6.26 86.38 0.54 6.35 16
14 N -0.75 -37.45 5.60 -343.46 -1.92 -39.37 16
15 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16
16 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16
17 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16
18 N -0.97 -58.44 13.06 21.65 0.28 -58.15 16
19 Si 0.97 45.94 29.55 68.60 2.03 47.97 16
20 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16
21 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16
22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16
23 C -0.21 -2.98 9.04 22.36 0.20 -2.78 16
24 C -0.09 -1.07 9.69 22.25 0.22 -0.85 16
25 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16
26 H 0.07 0.40 8.08 -2.39 -0.02 0.38 16
27 H 0.07 0.42 8.08 -2.39 -0.02 0.40 16
28 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16
29 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16
30 H 0.12 1.21 7.67 -2.39 -0.02 1.19 16
31 H 0.12 1.21 7.65 -2.39 -0.02 1.19 16
32 H 0.42 5.14 8.47 -92.71 -0.79 4.36 16
33 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16
34 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16
35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16
36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16
37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16
38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16
39 H 0.38 19.66 7.67 -92.70 -0.71 18.94 16
40 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16
41 H 0.15 1.32 6.30 -2.91 -0.02 1.30 16
42 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16
Total: -1.00 -76.58 359.48 2.07 -74.51
By element:
Atomic # 1 Polarization: 23.48 SS G_CDS: -0.47 Total: 23.01 kcal
Atomic # 6 Polarization: -8.49 SS G_CDS: 5.17 Total: -3.32 kcal
Atomic # 7 Polarization: -109.75 SS G_CDS: -4.21 Total: -113.96 kcal
Atomic # 8 Polarization: -27.76 SS G_CDS: -0.45 Total: -28.21 kcal
Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal
Total: -76.58 2.07 -74.51 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001175423190.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.841 kcal
(2) G-P(sol) polarization free energy of solvation -76.582 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.511 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.670 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds