Wall clock time and date at job start Tue Mar 31 2020 03:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00345 * 2 1 4 4 H 1.48504 * 109.47222 * 270.00442 * 3 2 1 5 5 H 1.48506 * 109.46817 * 30.00040 * 3 2 1 6 6 H 1.48497 * 109.47319 * 150.00175 * 3 2 1 7 7 C 1.38813 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00067 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00084 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99758 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47002 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47148 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.46950 * 180.02562 * 12 11 10 14 14 C 1.34775 * 119.99898 * 179.97438 * 13 12 11 15 15 O 1.21609 * 119.99782 * 0.02562 * 14 13 12 16 16 C 1.47402 * 120.00134 * 179.97438 * 14 13 12 17 17 N 1.31870 * 125.93677 * 0.02562 * 16 14 13 18 18 C 1.33371 * 109.15842 * 179.97438 * 17 16 14 19 19 C 1.34874 * 108.15563 * 359.97438 * 18 17 16 20 20 N 1.35665 * 107.37234 * 0.06913 * 19 18 17 21 21 C 1.46446 * 124.57624 * 179.85044 * 20 19 18 22 22 C 1.53284 * 108.75177 * 342.79151 * 21 20 19 23 23 C 1.53138 * 109.60806 * 50.51704 * 22 21 20 24 24 C 1.50763 * 128.31961 * 180.08975 * 19 18 17 25 25 H 0.97006 * 119.99668 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00292 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47744 * 60.00134 * 10 9 7 28 28 H 1.08998 * 109.47649 * 299.99695 * 10 9 7 29 29 H 1.09001 * 109.46650 * 60.00333 * 11 10 9 30 30 H 1.08997 * 109.47330 * 299.99870 * 11 10 9 31 31 H 1.08997 * 109.46968 * 59.99864 * 12 11 10 32 32 H 1.08997 * 109.46922 * 300.00148 * 12 11 10 33 33 H 0.97001 * 120.00063 * 0.02562 * 13 12 11 34 34 H 1.08002 * 125.91984 * 180.24409 * 18 17 16 35 35 H 1.08994 * 109.59135 * 223.01223 * 21 20 19 36 36 H 1.09003 * 109.71277 * 102.64023 * 21 20 19 37 37 H 1.09000 * 109.44534 * 290.47839 * 22 21 20 38 38 H 1.08996 * 109.45296 * 170.56482 * 22 21 20 39 39 H 1.09001 * 109.51505 * 170.59712 * 23 22 21 40 40 H 1.09007 * 109.50809 * 50.45670 * 23 22 21 41 41 H 1.09003 * 109.73115 * 283.88236 * 24 19 18 42 42 H 1.08993 * 109.73120 * 44.56956 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 6 5.6163 -2.1914 -0.0024 12 6 6.3813 -3.5165 -0.0017 13 7 7.8217 -3.2488 -0.0023 14 6 8.6975 -4.2732 -0.0014 15 8 8.2920 -5.4197 -0.0005 16 6 10.1467 -4.0039 -0.0026 17 7 10.7125 -2.8128 -0.0041 18 6 12.0383 -2.9580 -0.0042 19 6 12.3165 -4.2777 -0.0022 20 7 11.1331 -4.9412 -0.0024 21 6 10.9979 -6.3994 -0.0037 22 6 12.3328 -7.0177 -0.4342 23 6 13.4694 -6.4175 0.3983 24 6 13.6667 -4.9485 0.0003 25 1 -0.4850 0.8401 0.0004 26 1 3.8647 -0.3622 -0.0014 27 1 3.8484 -3.0427 -0.8908 28 1 3.8491 -3.0423 0.8891 29 1 5.8803 -1.6195 0.8872 30 1 5.8790 -1.6203 -0.8928 31 1 6.1173 -4.0888 -0.8910 32 1 6.1186 -4.0872 0.8889 33 1 8.1450 -2.3342 -0.0027 34 1 12.7634 -2.1576 -0.0016 35 1 10.2162 -6.6933 -0.7041 36 1 10.7407 -6.7457 0.9973 37 1 12.5061 -6.8080 -1.4897 38 1 12.2999 -8.0961 -0.2795 39 1 14.3892 -6.9718 0.2119 40 1 13.2159 -6.4769 1.4568 41 1 14.1071 -4.8930 -0.9953 42 1 14.3205 -4.4567 0.7205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176502218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:47 Heat of formation + Delta-G solvation = 24.160367 kcal Electronic energy + Delta-G solvation = -22400.475158 eV Core-core repulsion = 18995.233710 eV Total energy + Delta-G solvation = -3405.241448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.84476 -39.50526 -37.17951 -36.20912 -34.53382 -33.32665 -32.10609 -31.10401 -30.11717 -28.47754 -25.78360 -24.76697 -23.47739 -22.31818 -22.06009 -21.28705 -20.46649 -19.44438 -18.13070 -17.40090 -16.63057 -16.37081 -15.78426 -15.65661 -14.95708 -14.64284 -14.61634 -14.51271 -14.22280 -14.13385 -14.02401 -13.65872 -13.42208 -12.78975 -12.62967 -12.41360 -12.00884 -11.68341 -11.62576 -11.54644 -11.18320 -11.02163 -10.86706 -10.68764 -10.48630 -10.30922 -10.11855 -9.99806 -9.57780 -9.23835 -8.88379 -8.66518 -7.22575 -5.75164 -3.11172 1.10978 2.11554 2.30863 3.10653 3.21981 3.39548 3.42306 3.47159 3.93289 4.05406 4.14997 4.16601 4.30926 4.60882 4.73971 4.80189 4.84299 4.92590 4.95749 5.13273 5.19219 5.21253 5.23886 5.33536 5.38335 5.51798 5.55242 5.57246 5.76615 5.92091 5.96260 5.96980 6.15430 6.25853 6.32905 6.61459 6.70162 6.73501 7.22159 7.58985 7.97357 8.01010 8.43670 9.22560 9.94773 10.14326 11.43126 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.039231 B = 0.002391 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.555538 B =11707.975298 C =12357.340357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.161 3.839 11 C -0.143 4.143 12 C 0.124 3.876 13 N -0.701 5.701 14 C 0.605 3.395 15 O -0.543 6.543 16 C 0.143 3.857 17 N -0.445 5.445 18 C -0.022 4.022 19 C -0.001 4.001 20 N -0.409 5.409 21 C 0.101 3.899 22 C -0.136 4.136 23 C -0.128 4.128 24 C -0.048 4.048 25 H 0.259 0.741 26 H 0.361 0.639 27 H 0.031 0.969 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.413 0.587 34 H 0.177 0.823 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.885 -13.153 -0.078 35.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.033 3.967 11 C -0.181 4.181 12 C 0.001 3.999 13 N -0.352 5.352 14 C 0.389 3.611 15 O -0.420 6.420 16 C -0.116 4.116 17 N -0.167 5.167 18 C -0.175 4.175 19 C -0.121 4.121 20 N -0.090 5.090 21 C -0.020 4.020 22 C -0.174 4.174 23 C -0.166 4.166 24 C -0.086 4.086 25 H 0.069 0.931 26 H 0.194 0.806 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.249 0.751 34 H 0.195 0.805 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 31.756 -13.515 -0.076 34.512 hybrid contribution 1.108 1.006 0.022 1.497 sum 32.864 -12.509 -0.054 35.164 Atomic orbital electron populations 1.69708 1.05104 1.25833 1.57559 1.24695 0.95288 0.97298 1.02029 0.86514 0.79200 0.84835 0.77780 1.21053 1.21717 1.20292 1.19067 0.80568 0.94816 1.43040 0.89152 1.42688 1.04113 1.02180 1.91282 1.20489 0.87544 0.89549 0.99077 1.22010 0.97068 0.96073 1.02968 1.21439 0.77207 0.98291 1.02989 1.45733 1.06743 1.09610 1.73104 1.16427 0.82337 0.85253 0.77092 1.90815 1.79038 1.20784 1.51396 1.22493 0.91632 0.84137 1.13297 1.70393 1.07964 1.22028 1.16303 1.22014 0.92405 0.94194 1.08902 1.21353 0.88332 0.93291 1.09124 1.44973 1.05562 1.07920 1.50557 1.22189 0.99817 0.75409 1.04596 1.21958 0.93098 1.01244 1.01116 1.21695 0.99090 0.95356 1.00418 1.20316 0.90441 0.94593 1.03266 0.93055 0.80626 0.95142 0.95189 0.91106 0.91084 0.90767 0.90785 0.75143 0.80536 0.87633 0.89104 0.90626 0.89068 0.90169 0.91165 0.89515 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.74 13.97 55.49 0.78 -28.96 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 22.36 27.73 -169.99 -4.71 17.65 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.54 6.52 56.52 0.37 -6.18 16 7 C -0.25 -7.08 10.47 -15.06 -0.16 -7.24 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.76 -18.27 5.41 -59.91 -0.32 -18.60 16 10 C 0.16 3.09 6.26 -4.04 -0.03 3.07 16 11 C -0.14 -2.10 5.44 -26.73 -0.15 -2.25 16 12 C 0.12 1.65 5.67 -4.04 -0.02 1.63 16 13 N -0.70 -8.98 5.55 -61.39 -0.34 -9.32 16 14 C 0.61 8.43 7.81 -12.53 -0.10 8.33 16 15 O -0.54 -8.51 15.25 5.27 0.08 -8.43 16 16 C 0.14 1.84 7.82 -154.86 -1.21 0.63 16 17 N -0.45 -5.63 10.92 -11.45 -0.12 -5.76 16 18 C -0.02 -0.22 11.82 -18.08 -0.21 -0.43 16 19 C 0.00 -0.01 6.57 -82.06 -0.54 -0.55 16 20 N -0.41 -4.27 3.14 -110.08 -0.35 -4.61 16 21 C 0.10 0.82 6.10 -3.92 -0.02 0.79 16 22 C -0.14 -0.66 5.93 -26.51 -0.16 -0.81 16 23 C -0.13 -0.52 5.96 -26.41 -0.16 -0.67 16 24 C -0.05 -0.23 6.31 -27.61 -0.17 -0.40 16 25 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 26 H 0.36 8.43 5.53 -40.82 -0.23 8.21 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.41 4.86 8.16 -40.82 -0.33 4.52 16 34 H 0.18 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.11 0.96 7.28 -51.93 -0.38 0.58 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -35.16 345.56 -9.25 -44.41 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.44 Total: 6.35 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -3.02 Total: 2.07 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -0.36 Total: -67.25 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.08 Total: -8.43 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.16 -9.25 -44.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176502218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.570 kcal (2) G-P(sol) polarization free energy of solvation -35.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds