Wall clock time and date at job start Tue Mar 31 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00345 * 2 1 4 4 H 1.48504 * 109.47222 * 270.00442 * 3 2 1 5 5 H 1.48506 * 109.46817 * 30.00040 * 3 2 1 6 6 H 1.48497 * 109.47319 * 150.00175 * 3 2 1 7 7 C 1.38813 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00067 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00084 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99758 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47002 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47148 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.46950 * 180.02562 * 12 11 10 14 14 C 1.34775 * 119.99898 * 179.97438 * 13 12 11 15 15 O 1.21609 * 119.99782 * 0.02562 * 14 13 12 16 16 C 1.47402 * 120.00134 * 179.97438 * 14 13 12 17 17 N 1.31870 * 125.93677 * 0.02562 * 16 14 13 18 18 C 1.33371 * 109.15842 * 179.97438 * 17 16 14 19 19 C 1.34874 * 108.15563 * 359.97438 * 18 17 16 20 20 N 1.35665 * 107.37234 * 0.06913 * 19 18 17 21 21 C 1.46446 * 124.57624 * 179.85044 * 20 19 18 22 22 C 1.53284 * 108.75177 * 342.79151 * 21 20 19 23 23 C 1.53138 * 109.60806 * 50.51704 * 22 21 20 24 24 C 1.50763 * 128.31961 * 180.08975 * 19 18 17 25 25 H 0.97006 * 119.99668 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00292 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47744 * 60.00134 * 10 9 7 28 28 H 1.08998 * 109.47649 * 299.99695 * 10 9 7 29 29 H 1.09001 * 109.46650 * 60.00333 * 11 10 9 30 30 H 1.08997 * 109.47330 * 299.99870 * 11 10 9 31 31 H 1.08997 * 109.46968 * 59.99864 * 12 11 10 32 32 H 1.08997 * 109.46922 * 300.00148 * 12 11 10 33 33 H 0.97001 * 120.00063 * 0.02562 * 13 12 11 34 34 H 1.08002 * 125.91984 * 180.24409 * 18 17 16 35 35 H 1.08994 * 109.59135 * 223.01223 * 21 20 19 36 36 H 1.09003 * 109.71277 * 102.64023 * 21 20 19 37 37 H 1.09000 * 109.44534 * 290.47839 * 22 21 20 38 38 H 1.08996 * 109.45296 * 170.56482 * 22 21 20 39 39 H 1.09001 * 109.51505 * 170.59712 * 23 22 21 40 40 H 1.09007 * 109.50809 * 50.45670 * 23 22 21 41 41 H 1.09003 * 109.73115 * 283.88236 * 24 19 18 42 42 H 1.08993 * 109.73120 * 44.56956 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 6 5.6163 -2.1914 -0.0024 12 6 6.3813 -3.5165 -0.0017 13 7 7.8217 -3.2488 -0.0023 14 6 8.6975 -4.2732 -0.0014 15 8 8.2920 -5.4197 -0.0005 16 6 10.1467 -4.0039 -0.0026 17 7 10.7125 -2.8128 -0.0041 18 6 12.0383 -2.9580 -0.0042 19 6 12.3165 -4.2777 -0.0022 20 7 11.1331 -4.9412 -0.0024 21 6 10.9979 -6.3994 -0.0037 22 6 12.3328 -7.0177 -0.4342 23 6 13.4694 -6.4175 0.3983 24 6 13.6667 -4.9485 0.0003 25 1 -0.4850 0.8401 0.0004 26 1 3.8647 -0.3622 -0.0014 27 1 3.8484 -3.0427 -0.8908 28 1 3.8491 -3.0423 0.8891 29 1 5.8803 -1.6195 0.8872 30 1 5.8790 -1.6203 -0.8928 31 1 6.1173 -4.0888 -0.8910 32 1 6.1186 -4.0872 0.8889 33 1 8.1450 -2.3342 -0.0027 34 1 12.7634 -2.1576 -0.0016 35 1 10.2162 -6.6933 -0.7041 36 1 10.7407 -6.7457 0.9973 37 1 12.5061 -6.8080 -1.4897 38 1 12.2999 -8.0961 -0.2795 39 1 14.3892 -6.9718 0.2119 40 1 13.2159 -6.4769 1.4568 41 1 14.1071 -4.8930 -0.9953 42 1 14.3205 -4.4567 0.7205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176502218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:46 Heat of formation + Delta-G solvation = -0.686622 kcal Electronic energy + Delta-G solvation = -22401.552604 eV Core-core repulsion = 18995.233710 eV Total energy + Delta-G solvation = -3406.318895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.59522 -40.56275 -37.74964 -37.64683 -36.05712 -33.98266 -33.88873 -32.16800 -31.41525 -29.30138 -27.16532 -25.47715 -24.62472 -23.54344 -22.92539 -22.70785 -21.45965 -20.07590 -19.68201 -18.81464 -17.48119 -17.34881 -16.87403 -16.70692 -16.37707 -15.72007 -15.65206 -15.21817 -15.05143 -14.99537 -14.84041 -14.82567 -14.74421 -14.20197 -13.94281 -13.79438 -13.03386 -12.89132 -12.58801 -12.56342 -12.14402 -12.09112 -12.02618 -11.96923 -11.92290 -11.81281 -11.39183 -11.23855 -10.98415 -10.76943 -10.30978 -9.40909 -9.32143 -8.03688 -5.38440 0.24222 1.33159 1.38904 1.43090 1.50451 1.51470 2.19135 2.28027 2.48649 3.20845 3.27439 3.49485 3.52517 3.59052 3.73940 3.84636 4.04372 4.11662 4.20365 4.23539 4.26725 4.34571 4.49793 4.62014 4.65779 4.68332 4.80863 4.83460 4.85970 4.97487 5.08704 5.16834 5.25831 5.26626 5.28073 5.31896 5.60106 5.74217 5.87413 6.19982 6.24083 6.73805 6.97385 7.06566 7.81588 8.01738 9.17638 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.039231 B = 0.002391 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.555538 B =11707.975298 C =12357.340357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.068 4.068 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.248 1.248 7 C -0.240 4.240 8 H 0.055 0.945 9 N -0.759 5.759 10 C 0.156 3.844 11 C -0.124 4.124 12 C 0.133 3.867 13 N -0.695 5.695 14 C 0.603 3.397 15 O -0.570 6.570 16 C 0.104 3.896 17 N -0.462 5.462 18 C -0.042 4.042 19 C 0.014 3.986 20 N -0.411 5.411 21 C 0.095 3.905 22 C -0.130 4.130 23 C -0.125 4.125 24 C -0.048 4.048 25 H 0.259 0.741 26 H 0.368 0.632 27 H 0.029 0.971 28 H 0.028 0.972 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.418 0.582 34 H 0.203 0.797 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.960 -12.799 -0.072 39.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.259 4.259 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.173 1.173 7 C -0.371 4.371 8 H 0.073 0.927 9 N -0.406 5.406 10 C 0.029 3.971 11 C -0.163 4.163 12 C 0.010 3.990 13 N -0.346 5.346 14 C 0.388 3.612 15 O -0.449 6.449 16 C -0.153 4.153 17 N -0.185 5.185 18 C -0.195 4.195 19 C -0.107 4.107 20 N -0.092 5.092 21 C -0.026 4.026 22 C -0.167 4.167 23 C -0.163 4.163 24 C -0.086 4.086 25 H 0.067 0.933 26 H 0.202 0.798 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.256 0.744 34 H 0.220 0.780 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 35.870 -13.186 -0.069 38.216 hybrid contribution -0.112 0.774 0.016 0.782 sum 35.758 -12.412 -0.053 37.851 Atomic orbital electron populations 1.69900 1.07234 1.26829 1.59461 1.25609 0.96259 1.01636 1.02404 0.85324 0.78698 0.79023 0.78222 1.20251 1.22183 1.17255 1.19050 0.82748 0.93578 1.41737 0.92669 1.42679 1.02539 1.04233 1.91114 1.20643 0.90110 0.87585 0.98751 1.21778 0.93709 0.96845 1.03929 1.21239 0.77568 0.97414 1.02810 1.45611 1.06289 1.09834 1.72887 1.16631 0.83132 0.84924 0.76501 1.90787 1.79661 1.21689 1.52781 1.22231 0.91402 0.85111 1.16535 1.70319 1.09478 1.22288 1.16375 1.22599 0.91903 0.95714 1.09248 1.22098 0.89352 0.93152 1.06119 1.45204 1.05664 1.08562 1.49788 1.22346 1.01548 0.74553 1.04136 1.21981 0.91407 1.02152 1.01196 1.21721 0.99691 0.95075 0.99805 1.20563 0.88229 0.94813 1.04954 0.93258 0.79844 0.95308 0.95408 0.90191 0.90051 0.91010 0.91073 0.74448 0.77984 0.89371 0.89346 0.90554 0.87165 0.87579 0.91709 0.87754 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.14 13.97 21.65 0.30 -63.84 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.96 45.82 27.73 68.60 1.90 47.72 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.25 -10.55 6.52 99.48 0.65 -9.90 16 7 C -0.24 -14.07 10.47 84.03 0.88 -13.19 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 9 N -0.76 -35.99 5.41 -343.45 -1.86 -37.84 16 10 C 0.16 5.88 6.26 86.38 0.54 6.42 16 11 C -0.12 -3.46 5.44 30.60 0.17 -3.29 16 12 C 0.13 3.47 5.67 86.38 0.49 3.96 16 13 N -0.70 -17.52 5.55 -466.39 -2.59 -20.11 16 14 C 0.60 17.00 7.81 86.66 0.68 17.67 16 15 O -0.57 -18.34 15.25 -4.06 -0.06 -18.40 16 16 C 0.10 2.67 7.82 136.39 1.07 3.74 16 17 N -0.46 -11.36 10.92 -190.13 -2.08 -13.44 16 18 C -0.04 -0.76 11.82 83.69 0.99 0.23 16 19 C 0.01 0.21 6.57 41.21 0.27 0.48 16 20 N -0.41 -8.28 3.14 -502.17 -1.58 -9.85 16 21 C 0.10 1.49 6.10 86.48 0.53 2.01 16 22 C -0.13 -0.96 5.93 30.74 0.18 -0.78 16 23 C -0.13 -0.59 5.96 30.80 0.18 -0.41 16 24 C -0.05 -0.28 6.31 30.03 0.19 -0.09 16 25 H 0.26 15.99 8.31 -92.70 -0.77 15.21 16 26 H 0.37 16.32 5.53 -92.71 -0.51 15.81 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.42 9.50 8.16 -92.71 -0.76 8.74 16 34 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.09 1.67 7.28 -2.39 -0.02 1.65 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 0.58 8.12 -2.39 -0.02 0.56 16 38 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.06 0.41 8.12 -2.38 -0.02 0.39 16 41 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -77.83 345.56 0.38 -77.45 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.29 Total: 25.16 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 6.63 Total: 13.16 kcal Atomic # 7 Polarization: -137.30 SS G_CDS: -7.80 Total: -145.09 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.06 Total: -18.40 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.90 Total: 47.72 kcal Total: -77.83 0.38 -77.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176502218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.764 kcal (2) G-P(sol) polarization free energy of solvation -77.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds