Wall clock time and date at job start Tue Mar 31 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48498 * 109.47166 * 269.99997 * 3 2 1 5 5 H 1.48496 * 109.47062 * 30.00529 * 3 2 1 6 6 H 1.48506 * 109.46677 * 150.00299 * 3 2 1 7 7 C 1.38807 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99777 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00637 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00563 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47167 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46999 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46999 * 179.97438 * 12 11 10 14 14 C 1.53009 * 109.46990 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46991 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.46777 * 180.02562 * 15 14 13 17 17 C 1.34776 * 119.99780 * 180.02562 * 16 15 14 18 18 O 1.21515 * 120.00160 * 359.97438 * 17 16 15 19 19 C 1.48148 * 120.00017 * 180.02562 * 17 16 15 20 20 C 1.39443 * 120.09698 * 180.02562 * 19 17 16 21 21 N 1.32079 * 119.87260 * 179.97438 * 20 19 17 22 22 C 1.32142 * 120.07304 * 359.97438 * 21 20 19 23 23 C 1.38724 * 120.19178 * 0.28422 * 22 21 20 24 24 N 1.31797 * 120.12804 * 359.43155 * 23 22 21 25 25 H 0.97002 * 119.99656 * 359.97438 * 1 2 3 26 26 H 0.97003 * 119.99536 * 359.97438 * 9 7 2 27 27 H 1.08993 * 109.47345 * 59.99647 * 10 9 7 28 28 H 1.08998 * 109.46651 * 299.99595 * 10 9 7 29 29 H 1.09001 * 109.47283 * 59.99782 * 11 10 9 30 30 H 1.08998 * 109.46840 * 299.99278 * 11 10 9 31 31 H 1.08993 * 109.47490 * 59.99460 * 12 11 10 32 32 H 1.09006 * 109.47074 * 299.99796 * 12 11 10 33 33 H 1.08998 * 109.47524 * 60.00166 * 13 12 11 34 34 H 1.08998 * 109.46840 * 299.99203 * 13 12 11 35 35 H 1.09001 * 109.47021 * 59.99945 * 14 13 12 36 36 H 1.08995 * 109.47066 * 300.00262 * 14 13 12 37 37 H 1.09001 * 109.46959 * 60.00305 * 15 14 13 38 38 H 1.09002 * 109.46922 * 300.00257 * 15 14 13 39 39 H 0.97003 * 120.00291 * 359.97438 * 16 15 14 40 40 H 1.07999 * 120.06715 * 359.94846 * 20 19 17 41 41 H 1.08002 * 119.90049 * 180.02562 * 22 21 20 42 42 H 1.08008 * 119.93444 * 179.69733 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 6 1.8286 -6.1447 -0.0005 13 6 0.8343 -7.3076 -0.0005 14 6 1.5993 -8.6327 -0.0005 15 6 0.6050 -9.7956 0.0001 16 7 1.3375 -11.0643 0.0007 17 6 0.6635 -12.2315 0.0008 18 8 -0.5516 -12.2315 0.0009 19 6 1.4042 -13.5145 0.0020 20 6 0.7090 -14.7233 0.0016 21 7 1.3739 -15.8645 0.0022 22 6 2.6953 -15.8611 0.0026 23 6 3.3898 -14.6602 0.0085 24 7 2.7342 -13.5169 0.0023 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 0.0002 27 1 2.6846 -3.7146 0.8893 28 1 2.6845 -3.7146 -0.8906 29 1 0.4373 -4.7617 -0.8914 30 1 0.4368 -4.7621 0.8886 31 1 2.4547 -6.2025 0.8898 32 1 2.4559 -6.2026 -0.8901 33 1 0.2079 -7.2502 -0.8907 34 1 0.2075 -7.2496 0.8893 35 1 2.2259 -8.6905 0.8895 36 1 2.2259 -8.6905 -0.8905 37 1 -0.0220 -9.7380 -0.8897 38 1 -0.0214 -9.7376 0.8903 39 1 2.3075 -11.0643 0.0003 40 1 -0.3710 -14.7263 0.0012 41 1 3.2361 -16.7959 0.0027 42 1 4.4698 -14.6623 0.0137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177798907.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:22 Heat of formation + Delta-G solvation = 0.368471 kcal Electronic energy + Delta-G solvation = -21068.693872 eV Core-core repulsion = 17662.420730 eV Total energy + Delta-G solvation = -3406.273142 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.81907 -39.75030 -36.88246 -35.53843 -35.02073 -33.91628 -32.42957 -31.78498 -29.98392 -27.31055 -25.83838 -25.11361 -23.94684 -22.34352 -21.57133 -20.88129 -20.64909 -18.65470 -18.17210 -17.37366 -16.96368 -16.39899 -16.14054 -15.76374 -15.56899 -14.96576 -14.67297 -14.41173 -14.17757 -13.49154 -13.47590 -13.36836 -12.97365 -12.73136 -12.40612 -12.31437 -11.95789 -11.73720 -11.37466 -11.21368 -10.91598 -10.86175 -10.73006 -10.68367 -10.38998 -10.24883 -10.11514 -9.96399 -9.76300 -9.62370 -9.47115 -8.83232 -6.87454 -5.72864 -3.01237 -0.23490 0.38715 2.20875 2.53876 3.18148 3.34490 3.45779 3.50378 3.52529 3.55900 3.79215 4.20020 4.48855 4.52279 4.57637 4.65224 4.73768 4.87629 4.95545 5.21996 5.34215 5.39043 5.56032 5.60451 5.63679 5.69145 5.71431 5.92766 5.96276 6.02197 6.14219 6.34987 6.35496 6.42865 6.43819 6.50175 6.89200 6.93359 6.97397 7.11066 7.66391 7.73021 8.46573 9.57147 10.16948 10.51442 11.50266 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.056911 B = 0.001608 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.877457 B =17408.287937 C =17858.508982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.115 3.885 16 N -0.707 5.707 17 C 0.573 3.427 18 O -0.526 6.526 19 C 0.029 3.971 20 C 0.110 3.890 21 N -0.440 5.440 22 C 0.073 3.927 23 C 0.051 3.949 24 N -0.413 5.413 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.411 0.589 40 H 0.184 0.816 41 H 0.178 0.822 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.501 -34.142 0.036 34.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.024 3.976 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.154 4.154 14 C -0.169 4.169 15 C -0.008 4.008 16 N -0.358 5.358 17 C 0.356 3.644 18 O -0.402 6.402 19 C -0.112 4.112 20 C -0.049 4.049 21 N -0.154 5.154 22 C -0.088 4.088 23 C -0.112 4.112 24 N -0.131 5.131 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.247 0.753 40 H 0.201 0.799 41 H 0.195 0.805 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.706 -33.957 0.042 34.433 hybrid contribution 0.779 0.899 -0.011 1.190 sum 6.485 -33.058 0.031 33.688 Atomic orbital electron populations 1.69669 1.05116 1.25582 1.57976 1.24752 0.95546 0.97706 1.03176 0.86174 0.78620 0.83820 0.77501 1.21737 1.21759 1.20788 1.19264 0.91056 0.84307 1.42425 0.91220 1.42396 1.05910 1.00158 1.89459 1.20657 0.93663 0.85719 0.97528 1.21729 0.98888 0.93835 1.02004 1.21499 0.97866 0.93845 1.01936 1.21519 0.98433 0.92768 1.02686 1.21837 0.98219 0.93874 1.02981 1.21577 0.95045 0.81200 1.02989 1.45896 1.11338 1.05372 1.73192 1.17634 0.86619 0.82833 0.77350 1.90835 1.12593 1.86968 1.49794 1.22234 0.91063 0.95996 1.01895 1.23895 1.02675 0.86967 0.91385 1.68662 1.08926 1.28948 1.08837 1.24174 0.91125 1.00310 0.93215 1.23896 1.02310 0.88299 0.96655 1.68338 1.07583 1.30643 1.06534 0.93555 0.78335 0.96588 0.96595 0.92075 0.92085 0.92079 0.92076 0.91568 0.91561 0.91140 0.91133 0.90879 0.90881 0.75293 0.79892 0.80514 0.80346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.93 13.06 55.49 0.72 -28.20 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.74 -19.45 5.60 -59.91 -0.34 -19.78 16 10 C 0.15 3.16 6.26 -4.04 -0.03 3.13 16 11 C -0.13 -2.06 5.33 -26.73 -0.14 -2.20 16 12 C -0.11 -1.38 5.21 -26.73 -0.14 -1.52 16 13 C -0.12 -1.15 5.22 -26.73 -0.14 -1.29 16 14 C -0.13 -1.03 5.33 -26.73 -0.14 -1.18 16 15 C 0.11 0.98 5.67 -4.04 -0.02 0.96 16 16 N -0.71 -5.91 5.55 -61.15 -0.34 -6.25 16 17 C 0.57 5.73 7.81 -12.19 -0.10 5.64 16 18 O -0.53 -6.76 16.35 5.35 0.09 -6.67 16 19 C 0.03 0.25 6.75 -82.84 -0.56 -0.31 16 20 C 0.11 0.87 10.77 -17.00 -0.18 0.69 16 21 N -0.44 -3.21 10.49 -12.71 -0.13 -3.34 16 22 C 0.07 0.31 11.23 -17.24 -0.19 0.12 16 23 C 0.05 0.22 11.22 -17.39 -0.20 0.02 16 24 N -0.41 -2.92 9.71 -9.61 -0.09 -3.01 16 25 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.38 10.58 7.67 -40.82 -0.31 10.27 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.41 2.81 7.82 -40.82 -0.32 2.49 16 40 H 0.18 1.30 7.65 -52.49 -0.40 0.90 16 41 H 0.18 0.12 8.06 -52.49 -0.42 -0.30 16 42 H 0.18 0.12 8.06 -52.48 -0.42 -0.30 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -34.98 361.04 -8.26 -43.24 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.50 Total: 4.40 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -2.08 Total: -3.60 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.18 Total: -60.59 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: 0.09 Total: -6.67 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.98 -8.26 -43.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177798907.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.606 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds