Wall clock time and date at job start Tue Mar 31 2020 03:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48500 * 109.47047 * 270.00188 * 3 2 1 5 5 H 1.48499 * 109.46902 * 29.99491 * 3 2 1 6 6 H 1.48501 * 109.47447 * 149.99831 * 3 2 1 7 7 C 1.38815 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99858 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00390 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47421 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46969 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.46972 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.46977 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46623 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47075 * 179.97438 * 15 14 13 17 17 C 1.34777 * 120.00264 * 179.97438 * 16 15 14 18 18 O 1.21476 * 119.99523 * 0.28247 * 17 16 15 19 19 C 1.48456 * 119.99737 * 180.02562 * 17 16 15 20 20 C 1.39536 * 120.54592 * 180.02562 * 19 17 16 21 21 C 1.38760 * 118.26434 * 180.02562 * 20 19 17 22 22 N 1.32209 * 119.14341 * 0.02562 * 21 20 19 23 23 C 1.31881 * 121.03800 * 0.02562 * 22 21 20 24 24 N 1.31579 * 121.91507 * 359.71018 * 23 22 21 25 25 H 0.97000 * 119.99517 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99757 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.46875 * 60.00238 * 10 9 7 28 28 H 1.09000 * 109.47024 * 300.00392 * 10 9 7 29 29 H 1.09000 * 109.46497 * 60.00401 * 11 10 9 30 30 H 1.08996 * 109.46876 * 300.00010 * 11 10 9 31 31 H 1.08996 * 109.47452 * 59.99938 * 12 11 10 32 32 H 1.09004 * 109.47552 * 300.00092 * 12 11 10 33 33 H 1.08996 * 109.47407 * 59.99513 * 13 12 11 34 34 H 1.09000 * 109.46986 * 299.99742 * 13 12 11 35 35 H 1.08996 * 109.46884 * 60.00293 * 14 13 12 36 36 H 1.08996 * 109.47129 * 299.99215 * 14 13 12 37 37 H 1.09001 * 109.47362 * 60.00551 * 15 14 13 38 38 H 1.09000 * 109.47486 * 299.99829 * 15 14 13 39 39 H 0.96999 * 119.99689 * 0.02562 * 16 15 14 40 40 H 1.08002 * 120.87156 * 0.02871 * 20 19 17 41 41 H 1.07996 * 120.43192 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.03957 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.6163 -2.1915 0.0000 12 6 6.3812 -3.5165 -0.0006 13 6 7.8855 -3.2370 0.0000 14 6 8.6504 -4.5621 -0.0013 15 6 10.1547 -4.2825 -0.0013 16 7 10.8872 -5.5513 -0.0019 17 6 12.2350 -5.5514 -0.0025 18 8 12.8423 -4.4993 0.0026 19 6 12.9771 -6.8371 -0.0037 20 6 14.3724 -6.8505 -0.0039 21 6 15.0178 -8.0789 -0.0055 22 7 14.2949 -9.1859 -0.0075 23 6 12.9770 -9.1375 -0.0083 24 7 12.3229 -7.9958 -0.0017 25 1 -0.4849 0.8401 -0.0004 26 1 3.8646 -0.3623 -0.0004 27 1 3.8484 -3.0427 -0.8898 28 1 3.8490 -3.0424 0.8902 29 1 5.8796 -1.6200 0.8901 30 1 5.8796 -1.6199 -0.8900 31 1 6.1178 -4.0877 -0.8908 32 1 6.1180 -4.0886 0.8891 33 1 8.1486 -2.6660 0.8904 34 1 8.1491 -2.6649 -0.8895 35 1 8.3873 -5.1326 -0.8920 36 1 8.3870 -5.1346 0.8880 37 1 10.4182 -3.7118 0.8892 38 1 10.4179 -3.7102 -0.8908 39 1 10.4022 -6.3913 -0.0026 40 1 14.9355 -5.9289 -0.0026 41 1 16.0965 -8.1301 -0.0053 42 1 12.4184 -10.0618 -0.0095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179872332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:21 Heat of formation + Delta-G solvation = 5.374060 kcal Electronic energy + Delta-G solvation = -21119.658891 eV Core-core repulsion = 17713.602808 eV Total energy + Delta-G solvation = -3406.056084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78160 -39.85062 -36.99568 -35.65216 -34.62973 -33.96352 -32.72602 -31.93933 -30.41689 -27.66035 -25.93784 -24.99941 -23.93247 -22.14270 -21.66199 -20.94118 -20.84747 -18.91380 -18.23120 -17.46530 -16.46650 -16.24019 -16.11917 -16.02739 -15.81376 -15.07324 -14.60681 -14.37460 -14.30758 -14.23623 -13.87275 -13.26698 -13.09091 -12.71491 -12.44167 -11.86478 -11.66580 -11.62263 -11.48054 -11.46771 -11.02663 -10.98812 -10.84273 -10.79467 -10.41294 -10.37219 -10.32552 -10.08289 -9.94797 -9.56413 -9.56275 -8.86459 -7.19707 -5.74564 -3.09562 -0.13479 0.26636 2.20760 2.43481 3.21487 3.28973 3.39331 3.42349 3.46806 3.49191 3.93989 4.21656 4.38137 4.45228 4.61532 4.66255 4.83199 4.87681 4.98044 5.12528 5.22291 5.29536 5.47357 5.51513 5.57470 5.59765 5.62232 5.76798 5.85341 5.91937 6.01570 6.11886 6.14533 6.21557 6.24658 6.38588 6.80130 6.84260 6.92055 7.30154 7.58339 8.02649 8.44919 9.24584 9.97188 10.17578 11.44023 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.049589 B = 0.001698 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.500851 B =16485.893868 C =17008.737381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.759 5.759 10 C 0.156 3.844 11 C -0.131 4.131 12 C -0.114 4.114 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.115 3.885 16 N -0.705 5.705 17 C 0.567 3.433 18 O -0.524 6.524 19 C 0.132 3.868 20 C -0.170 4.170 21 C 0.151 3.849 22 N -0.507 5.507 23 C 0.296 3.704 24 N -0.498 5.498 25 H 0.259 0.741 26 H 0.360 0.640 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.413 0.587 40 H 0.162 0.838 41 H 0.179 0.821 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.202 -18.132 -0.033 36.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.404 5.404 10 C 0.029 3.971 11 C -0.168 4.168 12 C -0.152 4.152 13 C -0.154 4.154 14 C -0.170 4.170 15 C -0.008 4.008 16 N -0.356 5.356 17 C 0.350 3.650 18 O -0.399 6.399 19 C -0.016 4.016 20 C -0.192 4.192 21 C -0.016 4.016 22 N -0.221 5.221 23 C 0.008 3.992 24 N -0.214 5.214 25 H 0.069 0.931 26 H 0.193 0.807 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.249 0.751 40 H 0.180 0.820 41 H 0.196 0.804 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 31.827 -18.247 -0.022 36.686 hybrid contribution 0.736 1.515 0.005 1.684 sum 32.563 -16.732 -0.017 36.610 Atomic orbital electron populations 1.69709 1.05102 1.25782 1.57777 1.24686 0.95271 0.97245 1.02129 0.86516 0.79198 0.84879 0.77767 1.21090 1.21716 1.20343 1.19096 0.80772 0.94755 1.42800 0.89267 1.42743 1.04060 1.02418 1.91177 1.20640 0.88919 0.89158 0.98411 1.21780 0.96262 0.96958 1.01849 1.21491 0.93436 0.98007 1.02241 1.21519 0.95317 0.95969 1.02611 1.21836 0.92535 0.99436 1.03145 1.21585 0.91429 0.84851 1.02959 1.45903 1.05685 1.11115 1.72881 1.17807 0.82661 0.86981 0.77567 1.90825 1.68386 1.31197 1.49444 1.21664 0.92101 0.92836 0.95002 1.23035 0.95201 1.01866 0.99140 1.23422 1.01459 0.86941 0.89755 1.68396 1.08876 1.32756 1.12063 1.25055 0.87646 0.95899 0.90636 1.68347 1.42013 0.98693 1.12383 0.93101 0.80727 0.95691 0.95751 0.92141 0.92136 0.91840 0.91856 0.91605 0.91610 0.91015 0.91012 0.90887 0.90884 0.75092 0.82030 0.80448 0.77895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.89 13.97 55.49 0.78 -29.12 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.89 22.52 27.74 -169.99 -4.71 17.81 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 7 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 N -0.76 -18.68 5.41 -59.91 -0.32 -19.01 16 10 C 0.16 3.06 6.26 -4.04 -0.03 3.03 16 11 C -0.13 -1.95 5.33 -26.73 -0.14 -2.09 16 12 C -0.11 -1.28 5.21 -26.73 -0.14 -1.41 16 13 C -0.12 -1.04 5.21 -26.73 -0.14 -1.18 16 14 C -0.13 -0.95 5.33 -26.73 -0.14 -1.09 16 15 C 0.11 0.91 5.67 -4.04 -0.02 0.88 16 16 N -0.70 -5.56 5.55 -61.05 -0.34 -5.90 16 17 C 0.57 5.40 7.83 -12.05 -0.09 5.31 16 18 O -0.52 -6.45 16.43 5.39 0.09 -6.36 16 19 C 0.13 1.05 6.79 -82.64 -0.56 0.49 16 20 C -0.17 -1.04 9.72 -38.90 -0.38 -1.42 16 21 C 0.15 0.74 11.31 -17.20 -0.19 0.55 16 22 N -0.51 -3.25 10.42 -14.60 -0.15 -3.40 16 23 C 0.30 1.74 12.27 -92.26 -1.13 0.61 16 24 N -0.50 -3.59 9.70 -11.14 -0.11 -3.70 16 25 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 26 H 0.36 8.61 5.53 -40.82 -0.23 8.38 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.41 2.66 7.86 -40.82 -0.32 2.34 16 40 H 0.16 0.82 7.74 -52.49 -0.41 0.41 16 41 H 0.18 0.25 8.06 -52.49 -0.42 -0.17 16 42 H 0.20 0.54 8.06 -52.49 -0.42 0.11 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -35.46 358.17 -9.07 -44.53 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.46 Total: 3.40 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -3.23 Total: -3.65 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.15 Total: -61.12 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: 0.09 Total: -6.36 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.46 -9.07 -44.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179872332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.903 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds