Wall clock time and date at job start Tue Mar 31 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48500 * 109.47047 * 270.00188 * 3 2 1 5 5 H 1.48499 * 109.46902 * 29.99491 * 3 2 1 6 6 H 1.48501 * 109.47447 * 149.99831 * 3 2 1 7 7 C 1.38815 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99858 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00390 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47421 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46969 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.46972 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.46977 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46623 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47075 * 179.97438 * 15 14 13 17 17 C 1.34777 * 120.00264 * 179.97438 * 16 15 14 18 18 O 1.21476 * 119.99523 * 0.28247 * 17 16 15 19 19 C 1.48456 * 119.99737 * 180.02562 * 17 16 15 20 20 C 1.39536 * 120.54592 * 180.02562 * 19 17 16 21 21 C 1.38760 * 118.26434 * 180.02562 * 20 19 17 22 22 N 1.32209 * 119.14341 * 0.02562 * 21 20 19 23 23 C 1.31881 * 121.03800 * 0.02562 * 22 21 20 24 24 N 1.31579 * 121.91507 * 359.71018 * 23 22 21 25 25 H 0.97000 * 119.99517 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99757 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.46875 * 60.00238 * 10 9 7 28 28 H 1.09000 * 109.47024 * 300.00392 * 10 9 7 29 29 H 1.09000 * 109.46497 * 60.00401 * 11 10 9 30 30 H 1.08996 * 109.46876 * 300.00010 * 11 10 9 31 31 H 1.08996 * 109.47452 * 59.99938 * 12 11 10 32 32 H 1.09004 * 109.47552 * 300.00092 * 12 11 10 33 33 H 1.08996 * 109.47407 * 59.99513 * 13 12 11 34 34 H 1.09000 * 109.46986 * 299.99742 * 13 12 11 35 35 H 1.08996 * 109.46884 * 60.00293 * 14 13 12 36 36 H 1.08996 * 109.47129 * 299.99215 * 14 13 12 37 37 H 1.09001 * 109.47362 * 60.00551 * 15 14 13 38 38 H 1.09000 * 109.47486 * 299.99829 * 15 14 13 39 39 H 0.96999 * 119.99689 * 0.02562 * 16 15 14 40 40 H 1.08002 * 120.87156 * 0.02871 * 20 19 17 41 41 H 1.07996 * 120.43192 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.03957 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.6163 -2.1915 0.0000 12 6 6.3812 -3.5165 -0.0006 13 6 7.8855 -3.2370 0.0000 14 6 8.6504 -4.5621 -0.0013 15 6 10.1547 -4.2825 -0.0013 16 7 10.8872 -5.5513 -0.0019 17 6 12.2350 -5.5514 -0.0025 18 8 12.8423 -4.4993 0.0026 19 6 12.9771 -6.8371 -0.0037 20 6 14.3724 -6.8505 -0.0039 21 6 15.0178 -8.0789 -0.0055 22 7 14.2949 -9.1859 -0.0075 23 6 12.9770 -9.1375 -0.0083 24 7 12.3229 -7.9958 -0.0017 25 1 -0.4849 0.8401 -0.0004 26 1 3.8646 -0.3623 -0.0004 27 1 3.8484 -3.0427 -0.8898 28 1 3.8490 -3.0424 0.8902 29 1 5.8796 -1.6200 0.8901 30 1 5.8796 -1.6199 -0.8900 31 1 6.1178 -4.0877 -0.8908 32 1 6.1180 -4.0886 0.8891 33 1 8.1486 -2.6660 0.8904 34 1 8.1491 -2.6649 -0.8895 35 1 8.3873 -5.1326 -0.8920 36 1 8.3870 -5.1346 0.8880 37 1 10.4182 -3.7118 0.8892 38 1 10.4179 -3.7102 -0.8908 39 1 10.4022 -6.3913 -0.0026 40 1 14.9355 -5.9289 -0.0026 41 1 16.0965 -8.1301 -0.0053 42 1 12.4184 -10.0618 -0.0095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179872332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:20 Heat of formation + Delta-G solvation = -19.238729 kcal Electronic energy + Delta-G solvation = -21120.726182 eV Core-core repulsion = 17713.602808 eV Total energy + Delta-G solvation = -3407.123374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26234 -40.52034 -38.00089 -36.91471 -35.50570 -34.89061 -33.64519 -33.17339 -31.85168 -28.77885 -26.76326 -25.52821 -25.16348 -23.51673 -22.34761 -22.25836 -21.70916 -19.66807 -19.43356 -18.69437 -17.16533 -16.93945 -16.66934 -16.57427 -16.54154 -16.45529 -15.84014 -15.79397 -15.17118 -14.96135 -14.88851 -14.61403 -14.16331 -14.12486 -13.50257 -13.34899 -13.04258 -12.69075 -12.48620 -12.09066 -12.06654 -11.96530 -11.94753 -11.86499 -11.82328 -11.70818 -11.41190 -11.33697 -10.97601 -10.87127 -10.45347 -10.24001 -9.31244 -8.04786 -5.38636 -0.65739 -0.13257 1.37078 1.41057 1.48710 1.57101 1.82802 2.47444 2.73648 2.79798 3.16054 3.26439 3.47561 3.57619 3.73886 3.87267 4.00736 4.01150 4.20574 4.23666 4.28832 4.49741 4.58583 4.58693 4.62263 4.76367 4.82505 4.95492 4.98246 5.04246 5.13611 5.21934 5.24517 5.27247 5.36804 5.53191 5.55764 5.68483 5.73611 6.19813 6.29875 6.84268 6.95082 7.06401 7.83288 8.02773 9.16794 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.049589 B = 0.001698 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.500851 B =16485.893868 C =17008.737381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.251 1.251 7 C -0.242 4.242 8 H 0.054 0.946 9 N -0.762 5.762 10 C 0.149 3.851 11 C -0.120 4.120 12 C -0.107 4.107 13 C -0.111 4.111 14 C -0.121 4.121 15 C 0.117 3.883 16 N -0.696 5.696 17 C 0.563 3.437 18 O -0.559 6.559 19 C 0.112 3.888 20 C -0.172 4.172 21 C 0.159 3.841 22 N -0.521 5.521 23 C 0.291 3.709 24 N -0.508 5.508 25 H 0.259 0.741 26 H 0.366 0.634 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.420 0.580 40 H 0.169 0.831 41 H 0.213 0.787 42 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.823 -18.532 -0.022 39.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.257 4.257 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.176 1.176 7 C -0.373 4.373 8 H 0.072 0.928 9 N -0.408 5.408 10 C 0.023 3.977 11 C -0.158 4.158 12 C -0.145 4.145 13 C -0.150 4.150 14 C -0.158 4.158 15 C -0.006 4.006 16 N -0.347 5.347 17 C 0.348 3.652 18 O -0.437 6.437 19 C -0.035 4.035 20 C -0.195 4.195 21 C -0.008 4.008 22 N -0.235 5.235 23 C 0.003 3.997 24 N -0.225 5.225 25 H 0.067 0.933 26 H 0.199 0.801 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.258 0.742 40 H 0.186 0.814 41 H 0.229 0.771 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 34.468 -18.697 -0.010 39.213 hybrid contribution -0.104 1.493 -0.003 1.497 sum 34.364 -17.204 -0.013 38.430 Atomic orbital electron populations 1.69897 1.07195 1.26811 1.59531 1.25583 0.96227 1.01512 1.02394 0.85334 0.78620 0.79152 0.78227 1.20241 1.21998 1.17562 1.19095 0.82950 0.93553 1.41733 0.92782 1.42790 1.02521 1.04505 1.91016 1.20877 0.91764 0.87136 0.97907 1.21696 0.92883 0.99095 1.02126 1.21430 0.94399 0.95972 1.02716 1.21443 0.93758 0.96918 1.02837 1.21716 0.91539 0.98641 1.03943 1.21532 0.91886 0.84791 1.02395 1.45878 1.05393 1.11504 1.71961 1.18096 0.83000 0.87236 0.76908 1.90795 1.69079 1.32511 1.51318 1.21573 0.92834 0.92496 0.96611 1.23206 0.94600 1.02822 0.98877 1.23990 1.02935 0.85955 0.87952 1.68484 1.09203 1.33330 1.12476 1.25637 0.87909 0.96358 0.89761 1.68338 1.42299 0.98795 1.13027 0.93253 0.80065 0.95990 0.96104 0.91914 0.91785 0.91397 0.91453 0.91464 0.91429 0.90214 0.90232 0.91511 0.91481 0.74200 0.81393 0.77054 0.75282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.19 13.97 21.65 0.30 -63.89 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.96 46.13 27.74 68.60 1.90 48.03 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.25 -10.87 6.52 99.48 0.65 -10.22 16 7 C -0.24 -14.34 10.47 84.03 0.88 -13.46 16 8 H 0.05 3.50 8.06 -2.91 -0.02 3.47 16 9 N -0.76 -36.88 5.41 -343.45 -1.86 -38.74 16 10 C 0.15 5.71 6.26 86.38 0.54 6.26 16 11 C -0.12 -3.32 5.33 30.59 0.16 -3.16 16 12 C -0.11 -2.15 5.21 30.59 0.16 -1.99 16 13 C -0.11 -1.74 5.21 30.60 0.16 -1.58 16 14 C -0.12 -1.48 5.33 30.60 0.16 -1.31 16 15 C 0.12 1.71 5.67 86.38 0.49 2.20 16 16 N -0.70 -10.38 5.55 -465.37 -2.58 -12.97 16 17 C 0.56 10.59 7.83 86.97 0.68 11.28 16 18 O -0.56 -13.88 16.43 -3.64 -0.06 -13.94 16 19 C 0.11 1.71 6.79 42.00 0.29 2.00 16 20 C -0.17 -1.93 9.72 22.71 0.22 -1.71 16 21 C 0.16 1.25 11.31 84.76 0.96 2.21 16 22 N -0.52 -5.71 10.42 -200.10 -2.09 -7.80 16 23 C 0.29 2.96 12.27 180.92 2.22 5.19 16 24 N -0.51 -6.78 9.70 -189.16 -1.84 -8.62 16 25 H 0.26 15.99 8.31 -92.71 -0.77 15.21 16 26 H 0.37 16.70 5.53 -92.71 -0.51 16.18 16 27 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.42 4.91 7.86 -92.71 -0.73 4.18 16 40 H 0.17 1.59 7.74 -2.91 -0.02 1.57 16 41 H 0.21 -0.01 8.06 -2.91 -0.02 -0.03 16 42 H 0.23 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -77.36 358.17 0.90 -76.46 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.28 Total: 19.04 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 7.39 Total: 2.41 kcal Atomic # 7 Polarization: -123.95 SS G_CDS: -8.06 Total: -132.01 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.06 Total: -13.94 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.03 kcal Total: -77.36 0.90 -76.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179872332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.224 kcal (2) G-P(sol) polarization free energy of solvation -77.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds