Wall clock time and date at job start Tue Mar 31 2020 03:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 119.99877 * 2 1 4 4 H 1.48494 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46800 * 300.00266 * 3 2 1 6 6 H 1.48496 * 109.46956 * 60.00039 * 3 2 1 7 7 C 1.38805 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00296 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00627 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47131 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47131 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47289 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00072 * 180.02562 * 16 15 14 18 18 O 1.21468 * 120.00292 * 0.02562 * 17 16 15 19 19 C 1.48536 * 119.99551 * 180.02562 * 17 16 15 20 20 N 1.32461 * 119.19057 * 359.73254 * 19 17 16 21 21 C 1.32109 * 120.76605 * 179.71919 * 20 19 17 22 22 C 1.38803 * 119.16746 * 0.54011 * 21 20 19 23 23 C 1.38796 * 118.50447 * 359.73598 * 22 21 20 24 24 N 1.32116 * 119.16750 * 359.97438 * 23 22 21 25 25 H 0.97000 * 120.00225 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99618 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.47059 * 60.00276 * 10 9 7 28 28 H 1.09004 * 109.47074 * 300.00232 * 10 9 7 29 29 H 1.09001 * 109.46832 * 60.00150 * 11 10 9 30 30 H 1.09000 * 109.47611 * 300.00447 * 11 10 9 31 31 H 1.08998 * 109.46509 * 60.00429 * 12 11 10 32 32 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 33 33 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 34 34 H 1.09004 * 109.47261 * 300.00303 * 13 12 11 35 35 H 1.09001 * 109.46997 * 60.00426 * 14 13 12 36 36 H 1.08996 * 109.47452 * 300.00000 * 14 13 12 37 37 H 1.09001 * 109.47289 * 60.00050 * 15 14 13 38 38 H 1.09004 * 109.47261 * 300.00306 * 15 14 13 39 39 H 0.97001 * 119.99251 * 0.02562 * 16 15 14 40 40 H 1.08002 * 120.41691 * 180.27436 * 21 20 19 41 41 H 1.08001 * 120.74873 * 179.74998 * 22 21 20 42 42 H 1.07999 * 120.41584 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8196 -0.0008 12 6 1.8290 -6.1447 -0.0026 13 6 0.8348 -7.3076 -0.0024 14 6 1.5999 -8.6326 -0.0048 15 6 0.6057 -9.7955 -0.0039 16 7 1.3382 -11.0643 -0.0057 17 6 0.6643 -12.2315 -0.0058 18 8 -0.5504 -12.2315 -0.0049 19 6 1.4071 -13.5178 -0.0070 20 7 2.7316 -13.4989 -0.0134 21 6 3.4234 -14.6244 -0.0090 22 6 2.7452 -15.8354 -0.0091 23 6 1.3574 -15.8173 -0.0082 24 7 0.7286 -14.6554 -0.0067 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6855 -3.7149 0.8878 28 1 2.6842 -3.7140 -0.8922 29 1 0.4363 -4.7617 -0.8901 30 1 0.4383 -4.7621 0.8899 31 1 2.4569 -6.2028 0.8865 32 1 2.4544 -6.2019 -0.8936 33 1 0.2073 -7.2492 -0.8917 34 1 0.2091 -7.2505 0.8884 35 1 2.2277 -8.6912 0.8842 36 1 2.2252 -8.6894 -0.8957 37 1 -0.0227 -9.7371 -0.8927 38 1 -0.0194 -9.7385 0.8872 39 1 2.3082 -11.0642 -0.0068 40 1 4.5032 -14.6024 -0.0098 41 1 3.2852 -16.7707 -0.0097 42 1 0.7985 -16.7415 -0.0078 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179872635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:25 Heat of formation + Delta-G solvation = 6.297933 kcal Electronic energy + Delta-G solvation = -21076.730874 eV Core-core repulsion = 17670.714852 eV Total energy + Delta-G solvation = -3406.016022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76064 -39.62108 -36.83600 -35.48239 -34.50792 -33.86133 -32.90171 -31.79629 -29.98126 -27.35184 -25.71788 -25.13422 -23.91911 -22.32656 -21.56483 -20.91022 -20.62707 -18.80672 -18.16517 -16.96220 -16.63598 -16.39923 -16.07368 -15.79729 -15.56111 -14.89841 -14.63733 -14.22589 -14.15919 -14.06486 -13.46296 -13.37058 -12.91632 -12.70761 -12.33613 -11.88371 -11.71352 -11.55448 -11.34443 -11.18007 -10.90343 -10.71813 -10.70920 -10.51954 -10.38288 -10.31207 -10.22848 -9.94829 -9.91922 -9.62290 -9.42308 -8.82759 -6.86298 -5.71998 -3.00301 -0.14081 0.42057 2.20676 2.35065 3.31068 3.33076 3.46160 3.51302 3.53973 3.76447 3.90193 4.27210 4.37452 4.54900 4.60474 4.66707 4.77521 4.97779 5.05999 5.25141 5.37715 5.42129 5.58064 5.58184 5.65910 5.72049 5.74646 5.95691 5.99079 6.06505 6.16826 6.24349 6.37316 6.37687 6.44568 6.52073 6.95032 6.95689 6.99022 7.35362 7.74516 7.75951 8.47414 9.58090 10.18044 10.52490 11.51219 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.056713 B = 0.001614 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.599064 B =17342.683493 C =17794.625632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.117 3.883 16 N -0.707 5.707 17 C 0.581 3.419 18 O -0.503 6.503 19 C 0.285 3.715 20 N -0.496 5.496 21 C 0.147 3.853 22 C -0.209 4.209 23 C 0.146 3.854 24 N -0.469 5.469 25 H 0.254 0.746 26 H 0.383 0.617 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.412 0.588 40 H 0.178 0.822 41 H 0.156 0.844 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.607 -35.885 -0.011 36.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.024 3.976 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.154 4.154 14 C -0.169 4.169 15 C -0.006 4.006 16 N -0.360 5.360 17 C 0.361 3.639 18 O -0.374 6.374 19 C 0.014 3.986 20 N -0.213 5.213 21 C -0.020 4.020 22 C -0.231 4.231 23 C -0.020 4.020 24 N -0.184 5.184 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.248 0.752 40 H 0.195 0.805 41 H 0.174 0.826 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.313 -34.853 -0.016 35.420 hybrid contribution 1.211 -0.048 -0.001 1.212 sum 7.524 -34.900 -0.017 35.702 Atomic orbital electron populations 1.69673 1.05117 1.25465 1.58078 1.24750 0.95540 0.97703 1.03216 0.86109 0.78758 0.84133 0.77172 1.20574 1.21877 1.21884 1.19311 0.91089 0.84296 1.42257 0.91160 1.42407 1.05922 1.00175 1.89436 1.20660 0.93667 0.85716 0.97526 1.21732 0.98886 0.93841 1.02011 1.21499 0.97869 0.93832 1.01934 1.21519 0.98437 0.92758 1.02712 1.21832 0.98213 0.93796 1.03024 1.21578 0.95031 0.80963 1.03046 1.45832 1.11352 1.05018 1.73773 1.17251 0.86424 0.81976 0.78217 1.90836 1.12505 1.86450 1.47647 1.22939 0.86901 0.93855 0.94857 1.68313 1.08181 1.32481 1.12276 1.23348 1.01349 0.87143 0.90122 1.23235 0.97040 1.01419 1.01428 1.23449 0.92111 0.96345 0.90090 1.68276 1.41396 0.98262 1.10424 0.93604 0.78335 0.96587 0.96585 0.92085 0.92074 0.92070 0.92074 0.91554 0.91548 0.91094 0.91085 0.90852 0.90858 0.75218 0.80511 0.82639 0.80524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.03 13.06 55.49 0.72 -28.30 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.74 -19.52 5.60 -59.91 -0.34 -19.86 16 10 C 0.15 3.17 6.26 -4.05 -0.03 3.15 16 11 C -0.13 -2.08 5.33 -26.73 -0.14 -2.22 16 12 C -0.11 -1.39 5.21 -26.73 -0.14 -1.53 16 13 C -0.12 -1.17 5.21 -26.73 -0.14 -1.31 16 14 C -0.13 -1.06 5.33 -26.73 -0.14 -1.21 16 15 C 0.12 1.06 5.67 -4.04 -0.02 1.04 16 16 N -0.71 -6.47 5.54 -61.02 -0.34 -6.81 16 17 C 0.58 6.85 7.85 -12.01 -0.09 6.76 16 18 O -0.50 -7.71 16.86 5.39 0.09 -7.62 16 19 C 0.28 2.91 7.60 -157.07 -1.19 1.72 16 20 N -0.50 -3.83 9.58 -11.12 -0.11 -3.94 16 21 C 0.15 0.64 11.30 -17.22 -0.19 0.44 16 22 C -0.21 -0.65 10.18 -39.17 -0.40 -1.05 16 23 C 0.15 0.79 11.30 -17.22 -0.19 0.60 16 24 N -0.47 -4.72 10.13 -11.12 -0.11 -4.83 16 25 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.41 3.01 7.78 -40.82 -0.32 2.69 16 40 H 0.18 0.13 8.06 -52.49 -0.42 -0.29 16 41 H 0.16 -0.08 8.06 -52.49 -0.42 -0.50 16 42 H 0.18 0.36 8.06 -52.49 -0.42 -0.07 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -36.65 361.86 -9.10 -45.75 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.52 Total: 3.59 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.93 Total: -1.28 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -0.17 Total: -63.74 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.62 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.65 -9.10 -45.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179872635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.046 kcal (2) G-P(sol) polarization free energy of solvation -36.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds