Wall clock time and date at job start Tue Mar 31 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.37095 * 119.99984 * 2 1 4 4 H 1.08007 * 119.99736 * 206.55770 * 3 2 1 5 5 C 1.38950 * 120.00243 * 26.55158 * 3 2 1 6 6 N 1.31411 * 120.00127 * 9.05423 * 5 3 2 7 7 Si 1.86801 * 120.00000 * 189.04917 * 5 3 2 8 8 H 1.48507 * 109.46855 * 60.00621 * 7 5 3 9 9 H 1.48499 * 109.46848 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47173 * 300.00500 * 7 5 3 11 11 C 1.34776 * 119.99873 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00249 * 180.02562 * 11 2 1 13 13 C 1.50704 * 119.99962 * 0.02562 * 11 2 1 14 14 H 1.08997 * 109.47403 * 50.89002 * 13 11 2 15 15 C 1.53006 * 109.46834 * 290.89284 * 13 11 2 16 16 O 1.42899 * 109.47445 * 303.89905 * 15 13 11 17 17 N 1.46895 * 109.47269 * 170.89757 * 13 11 2 18 18 C 1.46900 * 111.00416 * 193.88309 * 17 13 11 19 19 C 1.46904 * 111.00203 * 69.92832 * 17 13 11 20 20 C 1.50696 * 109.47218 * 197.01139 * 19 17 13 21 21 C 1.38236 * 119.99690 * 269.72656 * 20 19 17 22 22 C 1.38239 * 120.00054 * 179.76702 * 21 20 19 23 23 C 1.38243 * 119.99936 * 0.50335 * 22 21 20 24 24 C 1.38237 * 119.99520 * 359.74884 * 23 22 21 25 25 C 1.38228 * 120.00204 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47023 * 272.08103 * 1 2 3 27 27 H 1.08992 * 109.46816 * 32.07749 * 1 2 3 28 28 H 1.09000 * 109.46778 * 152.08118 * 1 2 3 29 29 H 0.96995 * 120.00134 * 179.97438 * 6 5 3 30 30 H 1.09000 * 109.47220 * 183.89552 * 15 13 11 31 31 H 1.08999 * 109.46942 * 63.90171 * 15 13 11 32 32 H 0.96697 * 114.00327 * 180.02562 * 16 15 13 33 33 H 1.09000 * 109.46885 * 61.50557 * 18 17 13 34 34 H 1.08997 * 109.47275 * 181.50389 * 18 17 13 35 35 H 1.08998 * 109.46899 * 301.51184 * 18 17 13 36 36 H 1.09006 * 109.46760 * 317.00841 * 19 17 13 37 37 H 1.08997 * 109.47347 * 77.00865 * 19 17 13 38 38 H 1.07995 * 120.00373 * 359.97438 * 21 20 19 39 39 H 1.08005 * 120.00261 * 180.22842 * 22 21 20 40 40 H 1.07998 * 119.99954 * 179.72072 * 23 22 21 41 41 H 1.07999 * 119.99319 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.00236 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1452 1.2366 -0.4182 5 6 1.5658 2.3272 0.5379 6 7 0.4366 2.2347 1.2037 7 14 2.3848 3.9912 0.3147 8 1 2.4991 4.2963 -1.1342 9 1 1.5667 5.0384 0.9775 10 1 3.7392 3.9617 0.9228 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3854 -2.4723 0.0005 14 1 0.6426 -2.4631 -0.7971 15 6 0.6844 -2.6564 1.3480 16 8 1.6475 -2.5778 2.4008 17 7 2.3249 -3.5802 -0.2180 18 6 1.6095 -4.8193 -0.5512 19 6 3.1937 -3.7721 0.9510 20 6 4.3889 -4.6014 0.5578 21 6 4.3397 -5.9788 0.6646 22 6 5.4344 -6.7399 0.2994 23 6 6.5820 -6.1230 -0.1627 24 6 6.6329 -4.7454 -0.2645 25 6 5.5363 -3.9847 0.0952 26 1 -0.3633 0.0373 1.0270 27 1 -0.3633 0.8707 -0.5457 28 1 -0.3633 -0.9081 -0.4812 29 1 0.0285 3.0304 1.5794 30 1 0.1967 -3.6309 1.3738 31 1 -0.0621 -1.8730 1.4792 32 1 1.2728 -2.6864 3.2856 33 1 1.0492 -4.6779 -1.4754 34 1 2.3271 -5.6293 -0.6816 35 1 0.9214 -5.0698 0.2561 36 1 3.5293 -2.8019 1.3174 37 1 2.6382 -4.2847 1.7363 38 1 3.4449 -6.4605 1.0301 39 1 5.3946 -7.8163 0.3793 40 1 7.4388 -6.7174 -0.4437 41 1 7.5296 -4.2635 -0.6252 42 1 5.5762 -2.9083 0.0161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185226153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:42 Heat of formation + Delta-G solvation = -49.079777 kcal Electronic energy + Delta-G solvation = -24482.962565 eV Core-core repulsion = 21042.252435 eV Total energy + Delta-G solvation = -3440.710130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19368 -39.94206 -38.41585 -36.79542 -36.19992 -33.74131 -32.70813 -31.71717 -30.38705 -28.02690 -27.80989 -26.54892 -25.36682 -23.36221 -23.19425 -21.78653 -20.26267 -18.86506 -18.79724 -17.68852 -17.48074 -16.95297 -16.47802 -16.29667 -16.08623 -15.75179 -15.43936 -15.29537 -14.88138 -14.31945 -14.21635 -14.11023 -13.77565 -13.70282 -13.38636 -13.25087 -13.10709 -13.04291 -12.85244 -12.66260 -12.59439 -12.29113 -12.13400 -12.06717 -11.75890 -11.55924 -11.02975 -10.85966 -10.10600 -9.73000 -9.57890 -9.53265 -9.01255 -8.26851 -5.94296 0.52490 0.58899 1.39293 1.39764 1.49681 2.15765 2.29105 2.75807 3.03296 3.14058 3.35609 3.43143 3.96752 4.06278 4.11073 4.13232 4.26155 4.34421 4.36189 4.38485 4.45796 4.57610 4.62036 4.69333 4.73182 4.77480 4.93702 5.04567 5.05011 5.12572 5.25419 5.39075 5.41007 5.47641 5.63300 5.69122 5.91133 6.01913 6.19733 6.24293 6.36090 6.60487 6.87527 7.27112 7.56585 8.17329 8.74711 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021791 B = 0.004598 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.612081 B = 6088.588163 C = 6906.180396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.470 5.470 3 C -0.336 4.336 4 H 0.063 0.937 5 C -0.001 4.001 6 N -0.899 5.899 7 Si 0.983 3.017 8 H -0.268 1.268 9 H -0.269 1.269 10 H -0.281 1.281 11 C 0.463 3.537 12 O -0.607 6.607 13 C 0.080 3.920 14 H 0.122 0.878 15 C 0.054 3.946 16 O -0.577 6.577 17 N -0.533 5.533 18 C 0.020 3.980 19 C 0.118 3.882 20 C -0.083 4.083 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.133 4.133 25 C -0.122 4.122 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.270 0.730 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.386 0.614 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.136 0.864 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.128 0.872 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 -17.164 0.111 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.190 5.190 3 C -0.464 4.464 4 H 0.081 0.919 5 C -0.202 4.202 6 N -0.539 5.539 7 Si 0.807 3.193 8 H -0.193 1.193 9 H -0.193 1.193 10 H -0.207 1.207 11 C 0.252 3.748 12 O -0.492 6.492 13 C -0.033 4.033 14 H 0.140 0.860 15 C -0.026 4.026 16 O -0.384 6.384 17 N -0.256 5.256 18 C -0.128 4.128 19 C -0.009 4.009 20 C -0.084 4.084 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.151 4.151 25 C -0.141 4.141 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.235 0.765 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.154 0.846 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.146 0.854 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.023 -16.794 -0.703 16.809 hybrid contribution -0.540 1.342 1.066 1.797 sum -0.517 -15.452 0.364 15.465 Atomic orbital electron populations 1.21462 0.79860 0.99621 1.00896 1.43702 1.06369 1.04364 1.64606 1.19433 1.01317 0.86822 1.38849 0.91936 1.25992 0.97136 1.02567 0.94523 1.70010 1.19061 1.30697 1.34099 0.85154 0.77898 0.77470 0.78729 1.19335 1.19341 1.20713 1.20631 0.87970 0.85502 0.80731 1.90435 1.16045 1.87421 1.55258 1.21673 0.93966 0.90116 0.97502 0.86002 1.22799 0.91186 1.01594 0.86993 1.86814 1.36766 1.96417 1.18437 1.61633 1.20305 1.05016 1.38665 1.22592 0.98071 0.91057 1.01044 1.20956 0.90937 0.99076 0.89903 1.20105 0.95131 0.94625 0.98525 1.21253 0.99697 0.92226 1.00693 1.21462 0.92821 1.00980 0.98742 1.21433 0.99283 0.93956 0.99825 1.21349 0.98142 0.95104 1.00498 1.21140 0.94419 0.99306 0.99214 0.93294 0.93481 0.91744 0.91998 0.89964 0.92387 0.76499 0.90544 0.90559 0.93900 0.91791 0.92567 0.84603 0.83048 0.83474 0.85397 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.47 7.28 127.77 0.93 6.40 16 2 N -0.47 -24.81 3.01 -658.88 -1.98 -26.80 16 3 C -0.34 -19.79 9.20 84.04 0.77 -19.01 16 4 H 0.06 3.97 7.47 -2.91 -0.02 3.95 16 5 C 0.00 -0.06 5.15 84.93 0.44 0.38 16 6 N -0.90 -48.46 10.74 21.66 0.23 -48.22 16 7 Si 0.98 44.12 29.56 68.60 2.03 46.15 16 8 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 C 0.46 23.47 6.24 87.66 0.55 24.02 16 12 O -0.61 -35.92 14.16 -3.06 -0.04 -35.96 16 13 C 0.08 2.93 1.86 44.17 0.08 3.01 16 14 H 0.12 3.90 6.77 -2.39 -0.02 3.88 16 15 C 0.05 1.63 6.07 71.98 0.44 2.07 16 16 O -0.58 -19.59 9.21 -148.98 -1.37 -20.96 16 17 N -0.53 -18.76 4.39 -906.04 -3.97 -22.73 16 18 C 0.02 0.48 9.19 127.69 1.17 1.66 16 19 C 0.12 4.32 3.01 85.55 0.26 4.58 16 20 C -0.08 -2.82 5.07 -19.87 -0.10 -2.92 16 21 C -0.12 -3.08 8.16 22.27 0.18 -2.90 16 22 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 23 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 24 C -0.13 -3.87 10.05 22.27 0.22 -3.65 16 25 C -0.12 -4.49 9.70 22.27 0.22 -4.27 16 26 H 0.05 2.21 6.64 -2.39 -0.02 2.20 16 27 H 0.05 2.19 7.28 -2.39 -0.02 2.18 16 28 H 0.06 2.21 5.95 -2.39 -0.01 2.20 16 29 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 30 H 0.08 1.84 6.69 -2.39 -0.02 1.83 16 31 H 0.06 1.81 5.72 -2.39 -0.01 1.80 16 32 H 0.39 9.17 9.12 -74.06 -0.68 8.50 16 33 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 34 H 0.08 1.80 5.99 -2.39 -0.01 1.78 16 35 H 0.04 0.87 6.67 -2.39 -0.02 0.86 16 36 H 0.06 3.04 4.93 -2.38 -0.01 3.03 16 37 H 0.06 1.83 6.50 -2.39 -0.02 1.82 16 38 H 0.14 2.79 7.83 -2.91 -0.02 2.77 16 39 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 41 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 42 H 0.09 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -75.83 329.70 0.86 -74.97 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.37 Total: 29.31 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.61 Total: 4.24 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -5.72 Total: -97.75 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -1.41 Total: -56.92 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -75.83 0.86 -74.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185226153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.886 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds