Wall clock time and date at job start Tue Mar 31 2020 03:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99740 * 2 1 4 4 H 1.48497 * 109.47055 * 269.99734 * 3 2 1 5 5 H 1.48497 * 109.47285 * 30.00024 * 3 2 1 6 6 H 1.48507 * 109.46724 * 149.99905 * 3 2 1 7 7 C 1.38814 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99672 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99656 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99642 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.88591 * 37.42730 * 10 9 7 12 12 C 1.55159 * 111.00230 * 273.54622 * 10 9 7 13 13 C 1.54320 * 102.93957 * 206.38484 * 12 10 9 14 14 N 1.47022 * 107.27246 * 22.19625 * 13 12 10 15 15 C 1.34780 * 125.65176 * 181.01862 * 14 13 12 16 16 O 1.21279 * 120.00201 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99889 * 0.02806 * 15 14 13 18 18 C 1.52992 * 109.47125 * 179.97438 * 17 15 14 19 19 C 1.53007 * 109.47155 * 179.97438 * 18 17 15 20 20 N 1.46500 * 109.46993 * 180.02562 * 19 18 17 21 21 C 1.34943 * 126.03414 * 124.71725 * 20 19 18 22 22 C 1.35316 * 107.74531 * 180.25880 * 21 20 19 23 23 C 1.39873 * 107.91987 * 0.02562 * 22 21 20 24 24 N 1.30832 * 108.20166 * 0.02562 * 23 22 21 25 25 C 1.47430 * 108.70356 * 1.28391 * 14 13 12 26 26 H 0.97005 * 120.00181 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00029 * 359.97438 * 9 7 2 28 28 H 1.08998 * 110.71566 * 88.02512 * 12 10 9 29 29 H 1.08997 * 110.71914 * 324.74753 * 12 10 9 30 30 H 1.08996 * 109.88848 * 262.77556 * 13 12 10 31 31 H 1.09002 * 110.01181 * 141.68172 * 13 12 10 32 32 H 1.08997 * 109.46840 * 59.99265 * 17 15 14 33 33 H 1.09005 * 109.46642 * 299.99905 * 17 15 14 34 34 H 1.09005 * 109.47335 * 59.99882 * 18 17 15 35 35 H 1.08996 * 109.47512 * 299.99704 * 18 17 15 36 36 H 1.08997 * 109.46549 * 59.99880 * 19 18 17 37 37 H 1.08996 * 109.46944 * 300.00389 * 19 18 17 38 38 H 1.07996 * 126.13000 * 0.26422 * 21 20 19 39 39 H 1.07997 * 126.04396 * 180.02562 * 22 21 20 40 40 H 1.07998 * 125.89584 * 180.02562 * 23 22 21 41 41 H 1.09005 * 110.36512 * 94.48568 * 25 14 13 42 42 H 1.09001 * 110.36584 * 216.80692 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0000 11 1 3.6063 -3.2116 -0.6193 12 6 4.3121 -2.9976 1.4457 13 6 5.5893 -3.8556 1.3273 14 7 6.3220 -3.3866 0.1422 15 6 7.4832 -3.8950 -0.3156 16 8 8.0010 -3.4270 -1.3074 17 6 8.1382 -5.0452 0.4049 18 6 9.4326 -5.4276 -0.3155 19 6 10.0980 -6.5949 0.4165 20 7 11.3378 -6.9607 -0.2730 21 6 12.5655 -7.0271 0.2831 22 6 13.4374 -7.3935 -0.6847 23 6 12.7178 -7.5560 -1.8731 24 7 11.4593 -7.2959 -1.6277 25 6 5.5794 -2.2638 -0.4590 26 1 -0.4851 0.8401 -0.0004 27 1 3.8646 -0.3620 0.0004 28 1 3.4640 -3.6089 1.7540 29 1 4.4656 -2.1711 2.1394 30 1 5.3210 -4.9051 1.2060 31 1 6.2059 -3.7314 2.2175 32 1 7.4621 -5.9001 0.4148 33 1 8.3656 -4.7500 1.4293 34 1 10.1090 -4.5728 -0.3257 35 1 9.2049 -5.7229 -1.3396 36 1 9.4218 -7.4498 0.4270 37 1 10.3257 -6.2992 1.4405 38 1 12.8087 -6.8242 1.3156 39 1 14.5008 -7.5353 -0.5614 40 1 13.1300 -7.8460 -2.8283 41 1 5.9645 -1.3133 -0.0897 42 1 5.6456 -2.3041 -1.5463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187939404.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:11 Heat of formation + Delta-G solvation = 58.283375 kcal Electronic energy + Delta-G solvation = -22309.832422 eV Core-core repulsion = 18906.070658 eV Total energy + Delta-G solvation = -3403.761764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36735 -39.99056 -37.60449 -35.40345 -34.32629 -32.10921 -31.52376 -30.28825 -29.88817 -28.47700 -26.83629 -23.93866 -22.81520 -22.35959 -21.34512 -20.72681 -20.26273 -19.11678 -17.81495 -17.59322 -16.86154 -16.55433 -15.83265 -15.33063 -15.00704 -14.53732 -14.36361 -14.08837 -13.85332 -13.63409 -13.38234 -13.08486 -12.75836 -12.67574 -12.50875 -12.36081 -12.07160 -12.00290 -11.84416 -11.48814 -11.24447 -10.94682 -10.83038 -10.75732 -10.52240 -10.13023 -9.84849 -9.69463 -9.67366 -9.02968 -8.87356 -8.56128 -7.40219 -5.86060 -3.23985 1.63608 2.21312 2.60226 2.63612 3.00539 3.32264 3.35783 3.41085 4.10520 4.34215 4.48642 4.51202 4.60425 4.76439 4.85063 4.85728 4.86886 4.98603 5.15031 5.17657 5.24452 5.30216 5.35729 5.47799 5.48596 5.59406 5.69934 5.74412 5.81025 5.82020 5.97664 6.06907 6.21082 6.37767 6.39654 6.47213 6.72876 6.73850 7.44956 7.58411 7.87432 8.17847 8.32169 9.08689 9.81106 9.99134 11.31511 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.045988 B = 0.002321 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.708495 B =12063.370761 C =12283.707997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.739 5.739 10 C 0.177 3.823 11 H 0.072 0.928 12 C -0.154 4.154 13 C 0.101 3.899 14 N -0.615 5.615 15 C 0.526 3.474 16 O -0.544 6.544 17 C -0.133 4.133 18 C -0.116 4.116 19 C 0.133 3.867 20 N -0.370 5.370 21 C 0.051 3.949 22 C -0.278 4.278 23 C 0.041 3.959 24 N -0.291 5.291 25 C 0.095 3.905 26 H 0.261 0.739 27 H 0.364 0.636 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.172 0.828 39 H 0.146 0.854 40 H 0.182 0.818 41 H 0.065 0.935 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.723 -15.403 5.385 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.381 5.381 10 C 0.065 3.935 11 H 0.090 0.910 12 C -0.195 4.195 13 C -0.023 4.023 14 N -0.349 5.349 15 C 0.314 3.686 16 O -0.421 6.421 17 C -0.173 4.173 18 C -0.154 4.154 19 C 0.012 3.988 20 N -0.153 5.153 21 C -0.095 4.095 22 C -0.307 4.307 23 C -0.145 4.145 24 N -0.112 5.112 25 C -0.028 4.028 26 H 0.071 0.929 27 H 0.197 0.803 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.190 0.810 39 H 0.164 0.836 40 H 0.199 0.801 41 H 0.084 0.916 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 22.478 -15.122 4.410 27.448 hybrid contribution 1.344 1.201 0.611 1.903 sum 23.822 -13.921 5.021 28.045 Atomic orbital electron populations 1.69697 1.05106 1.26022 1.56801 1.24682 0.95251 0.97295 1.01580 0.86565 0.79175 0.84891 0.77958 1.20894 1.21618 1.20297 1.19017 0.80133 0.94851 1.43912 0.88999 1.42609 1.04166 1.01491 1.89854 1.21316 0.88965 0.89879 0.93297 0.90972 1.23376 0.95048 0.99541 1.01584 1.22128 0.94045 0.98847 0.87249 1.48475 1.22346 1.34805 1.29260 1.20162 0.79690 0.84104 0.84641 1.90724 1.63120 1.61917 1.26388 1.21536 0.97503 0.97782 1.00513 1.21591 0.95560 0.97351 1.00930 1.21785 0.83140 0.98848 0.95062 1.48758 1.06947 1.52365 1.07196 1.22590 0.85180 1.01712 1.00034 1.21521 1.00858 1.15419 0.92948 1.23920 0.90876 1.00055 0.99689 1.77404 1.19884 1.21037 0.92879 1.22584 0.92327 0.88797 0.99067 0.92897 0.80318 0.90177 0.90613 0.91601 0.91922 0.88493 0.88755 0.90596 0.89454 0.89507 0.88526 0.81036 0.83650 0.80121 0.91627 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.42 13.97 55.49 0.78 -27.65 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 21.55 27.74 -169.99 -4.71 16.83 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 7 C -0.25 -6.73 10.47 -15.06 -0.16 -6.89 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 N -0.74 -16.63 5.08 -51.23 -0.26 -16.89 16 10 C 0.18 3.18 3.70 -65.66 -0.24 2.94 16 11 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 12 C -0.15 -2.28 6.64 -24.90 -0.17 -2.45 16 13 C 0.10 1.14 6.48 -3.07 -0.02 1.12 16 14 N -0.61 -8.55 3.33 -170.38 -0.57 -9.11 16 15 C 0.53 7.28 7.85 -10.98 -0.09 7.20 16 16 O -0.54 -9.83 16.24 5.56 0.09 -9.74 16 17 C -0.13 -1.14 4.89 -27.89 -0.14 -1.28 16 18 C -0.12 -1.10 4.69 -26.73 -0.13 -1.22 16 19 C 0.13 0.91 6.51 -4.04 -0.03 0.89 16 20 N -0.37 -3.51 3.68 -61.37 -0.23 -3.74 16 21 C 0.05 0.39 11.45 -17.23 -0.20 0.19 16 22 C -0.28 -2.22 10.80 -40.01 -0.43 -2.65 16 23 C 0.04 0.38 12.03 -17.37 -0.21 0.18 16 24 N -0.29 -3.43 12.42 30.62 0.38 -3.05 16 25 C 0.10 1.57 6.53 -2.41 -0.02 1.55 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.36 8.10 5.57 -40.82 -0.23 7.88 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.37 8.07 -51.93 -0.42 -0.05 16 38 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.07 1.09 8.01 -51.93 -0.42 0.67 16 42 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 LS Contribution 352.27 15.07 5.31 5.31 Total: -1.00 -35.15 352.27 -7.69 -42.84 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.56 Total: 5.49 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.91 Total: -0.29 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.10 Total: -60.44 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.15 -7.69 -42.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187939404.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.122 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds