Wall clock time and date at job start Tue Mar 31 2020 03:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99740 * 2 1 4 4 H 1.48497 * 109.47055 * 269.99734 * 3 2 1 5 5 H 1.48497 * 109.47285 * 30.00024 * 3 2 1 6 6 H 1.48507 * 109.46724 * 149.99905 * 3 2 1 7 7 C 1.38814 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99672 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99656 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99642 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.88591 * 37.42730 * 10 9 7 12 12 C 1.55159 * 111.00230 * 273.54622 * 10 9 7 13 13 C 1.54320 * 102.93957 * 206.38484 * 12 10 9 14 14 N 1.47022 * 107.27246 * 22.19625 * 13 12 10 15 15 C 1.34780 * 125.65176 * 181.01862 * 14 13 12 16 16 O 1.21279 * 120.00201 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99889 * 0.02806 * 15 14 13 18 18 C 1.52992 * 109.47125 * 179.97438 * 17 15 14 19 19 C 1.53007 * 109.47155 * 179.97438 * 18 17 15 20 20 N 1.46500 * 109.46993 * 180.02562 * 19 18 17 21 21 C 1.34943 * 126.03414 * 124.71725 * 20 19 18 22 22 C 1.35316 * 107.74531 * 180.25880 * 21 20 19 23 23 C 1.39873 * 107.91987 * 0.02562 * 22 21 20 24 24 N 1.30832 * 108.20166 * 0.02562 * 23 22 21 25 25 C 1.47430 * 108.70356 * 1.28391 * 14 13 12 26 26 H 0.97005 * 120.00181 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00029 * 359.97438 * 9 7 2 28 28 H 1.08998 * 110.71566 * 88.02512 * 12 10 9 29 29 H 1.08997 * 110.71914 * 324.74753 * 12 10 9 30 30 H 1.08996 * 109.88848 * 262.77556 * 13 12 10 31 31 H 1.09002 * 110.01181 * 141.68172 * 13 12 10 32 32 H 1.08997 * 109.46840 * 59.99265 * 17 15 14 33 33 H 1.09005 * 109.46642 * 299.99905 * 17 15 14 34 34 H 1.09005 * 109.47335 * 59.99882 * 18 17 15 35 35 H 1.08996 * 109.47512 * 299.99704 * 18 17 15 36 36 H 1.08997 * 109.46549 * 59.99880 * 19 18 17 37 37 H 1.08996 * 109.46944 * 300.00389 * 19 18 17 38 38 H 1.07996 * 126.13000 * 0.26422 * 21 20 19 39 39 H 1.07997 * 126.04396 * 180.02562 * 22 21 20 40 40 H 1.07998 * 125.89584 * 180.02562 * 23 22 21 41 41 H 1.09005 * 110.36512 * 94.48568 * 25 14 13 42 42 H 1.09001 * 110.36584 * 216.80692 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0000 11 1 3.6063 -3.2116 -0.6193 12 6 4.3121 -2.9976 1.4457 13 6 5.5893 -3.8556 1.3273 14 7 6.3220 -3.3866 0.1422 15 6 7.4832 -3.8950 -0.3156 16 8 8.0010 -3.4270 -1.3074 17 6 8.1382 -5.0452 0.4049 18 6 9.4326 -5.4276 -0.3155 19 6 10.0980 -6.5949 0.4165 20 7 11.3378 -6.9607 -0.2730 21 6 12.5655 -7.0271 0.2831 22 6 13.4374 -7.3935 -0.6847 23 6 12.7178 -7.5560 -1.8731 24 7 11.4593 -7.2959 -1.6277 25 6 5.5794 -2.2638 -0.4590 26 1 -0.4851 0.8401 -0.0004 27 1 3.8646 -0.3620 0.0004 28 1 3.4640 -3.6089 1.7540 29 1 4.4656 -2.1711 2.1394 30 1 5.3210 -4.9051 1.2060 31 1 6.2059 -3.7314 2.2175 32 1 7.4621 -5.9001 0.4148 33 1 8.3656 -4.7500 1.4293 34 1 10.1090 -4.5728 -0.3257 35 1 9.2049 -5.7229 -1.3396 36 1 9.4218 -7.4498 0.4270 37 1 10.3257 -6.2992 1.4405 38 1 12.8087 -6.8242 1.3156 39 1 14.5008 -7.5353 -0.5614 40 1 13.1300 -7.8460 -2.8283 41 1 5.9645 -1.3133 -0.0897 42 1 5.6456 -2.3041 -1.5463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187939404.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:10 Heat of formation + Delta-G solvation = 33.517267 kcal Electronic energy + Delta-G solvation = -22310.906361 eV Core-core repulsion = 18906.070658 eV Total energy + Delta-G solvation = -3404.835703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96704 -41.11481 -38.87134 -36.12036 -36.03689 -33.61791 -32.63779 -31.31216 -30.85402 -29.72086 -27.70545 -25.40196 -24.24953 -23.20838 -21.91671 -21.74806 -21.34554 -20.16210 -19.73398 -18.40819 -17.77833 -17.62836 -16.83532 -16.32635 -16.24240 -15.77381 -15.58786 -15.06893 -14.97310 -14.70282 -14.47508 -14.38052 -13.79456 -13.61822 -13.52192 -13.49813 -13.21189 -13.12778 -12.87553 -12.77242 -12.63829 -12.24985 -12.15041 -11.92386 -11.82953 -11.62365 -11.46064 -11.00762 -10.98184 -10.34867 -9.69432 -9.46817 -9.36399 -8.04227 -5.39280 1.04336 1.37408 1.40612 1.46970 1.59853 1.66707 1.97498 1.99648 2.46540 3.24700 3.40844 3.51529 3.64637 3.79664 3.90382 3.94448 4.12510 4.16090 4.19175 4.30701 4.33019 4.39211 4.44347 4.49220 4.60163 4.71437 4.75355 4.85458 4.92947 4.96831 5.05141 5.15840 5.19063 5.25948 5.27286 5.40155 5.74494 5.78981 6.18949 6.23400 6.53264 6.82506 7.03376 7.11715 7.77980 7.96396 9.16476 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.045988 B = 0.002321 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.708495 B =12063.370761 C =12283.707997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.061 4.061 3 Si 0.951 3.049 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.251 1.251 7 C -0.229 4.229 8 H 0.063 0.937 9 N -0.745 5.745 10 C 0.166 3.834 11 H 0.059 0.941 12 C -0.147 4.147 13 C 0.107 3.893 14 N -0.615 5.615 15 C 0.518 3.482 16 O -0.597 6.597 17 C -0.119 4.119 18 C -0.107 4.107 19 C 0.132 3.868 20 N -0.381 5.381 21 C 0.055 3.945 22 C -0.292 4.292 23 C 0.028 3.972 24 N -0.346 5.346 25 C 0.103 3.897 26 H 0.258 0.742 27 H 0.366 0.634 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.212 0.788 39 H 0.166 0.834 40 H 0.197 0.803 41 H 0.065 0.935 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.341 -16.483 8.177 32.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.253 4.253 3 Si 0.778 3.222 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.175 1.175 7 C -0.360 4.360 8 H 0.081 0.919 9 N -0.388 5.388 10 C 0.057 3.943 11 H 0.077 0.923 12 C -0.187 4.187 13 C -0.015 4.015 14 N -0.349 5.349 15 C 0.309 3.691 16 O -0.478 6.478 17 C -0.158 4.158 18 C -0.146 4.146 19 C 0.012 3.988 20 N -0.164 5.164 21 C -0.091 4.091 22 C -0.322 4.322 23 C -0.158 4.158 24 N -0.168 5.168 25 C -0.021 4.021 26 H 0.067 0.933 27 H 0.200 0.800 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.156 0.844 38 H 0.229 0.771 39 H 0.184 0.816 40 H 0.213 0.787 41 H 0.083 0.917 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 25.148 -16.258 7.230 30.806 hybrid contribution 0.552 1.434 -0.302 1.566 sum 25.700 -14.824 6.928 30.467 Atomic orbital electron populations 1.69867 1.07010 1.26680 1.59438 1.25460 0.96071 1.01102 1.02630 0.85475 0.78772 0.80006 0.77899 1.20995 1.22183 1.17515 1.18968 0.82069 0.93589 1.41347 0.91903 1.42577 1.02676 1.03375 1.90142 1.21477 0.89275 0.87843 0.95726 0.92281 1.23197 0.97285 0.99957 0.98285 1.22270 0.92388 0.99364 0.87429 1.48574 1.22462 1.34024 1.29810 1.21200 0.79105 0.84686 0.84132 1.90708 1.64449 1.63742 1.28924 1.21582 0.96748 0.96205 1.01291 1.21428 0.95972 0.97607 0.99561 1.21990 0.82652 0.97978 0.96166 1.48998 1.08295 1.52431 1.06641 1.23281 0.84258 0.99992 1.01602 1.21895 1.02076 1.15648 0.92543 1.24369 0.90722 0.99532 1.01127 1.77331 1.21312 1.23233 0.94965 1.22274 0.91585 0.90148 0.98140 0.93306 0.80041 0.90089 0.91099 0.88656 0.88151 0.85640 0.84699 0.92899 0.93374 0.88337 0.84355 0.77138 0.81650 0.78662 0.91705 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.61 13.97 21.65 0.30 -61.31 16 2 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 3 Si 0.95 44.77 27.74 68.60 1.90 46.67 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.25 -10.56 6.52 99.48 0.65 -9.92 16 7 C -0.23 -12.55 10.47 84.03 0.88 -11.67 16 8 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 9 N -0.74 -33.26 5.08 -316.00 -1.61 -34.86 16 10 C 0.17 5.87 3.70 46.46 0.17 6.04 16 11 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 12 C -0.15 -3.97 6.64 31.78 0.21 -3.76 16 13 C 0.11 1.95 6.48 86.73 0.56 2.51 16 14 N -0.62 -15.56 3.33 -811.34 -2.70 -18.26 16 15 C 0.52 13.33 7.85 87.66 0.69 14.02 16 16 O -0.60 -21.77 16.24 -3.02 -0.05 -21.82 16 17 C -0.12 -1.57 4.89 29.85 0.15 -1.42 16 18 C -0.11 -1.85 4.69 30.59 0.14 -1.70 16 19 C 0.13 1.38 6.51 86.38 0.56 1.95 16 20 N -0.38 -6.51 3.68 -348.07 -1.28 -7.79 16 21 C 0.05 0.68 11.45 83.54 0.96 1.64 16 22 C -0.29 -4.17 10.80 21.99 0.24 -3.94 16 23 C 0.03 0.51 12.03 85.24 1.03 1.54 16 24 N -0.35 -8.18 12.42 -57.02 -0.71 -8.89 16 25 C 0.10 3.30 6.53 86.93 0.57 3.87 16 26 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 27 H 0.37 15.90 5.57 -92.71 -0.52 15.38 16 28 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.14 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 35 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.14 0.29 8.07 -2.39 -0.02 0.27 16 38 H 0.21 0.69 8.06 -2.91 -0.02 0.66 16 39 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 40 H 0.20 2.57 8.06 -2.91 -0.02 2.54 16 41 H 0.06 2.09 8.01 -2.38 -0.02 2.07 16 42 H 0.06 2.10 8.03 -2.39 -0.02 2.08 16 Total: -1.00 -82.33 352.27 2.91 -79.42 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.43 Total: 20.80 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 6.62 Total: 6.04 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -5.99 Total: -131.11 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Total: -82.33 2.91 -79.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187939404.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.938 kcal (2) G-P(sol) polarization free energy of solvation -82.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds