Wall clock time and date at job start Tue Mar 31 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 109.46632 * 2 1 4 4 C 1.46907 * 109.47055 * 240.00439 * 2 1 3 5 5 C 1.46894 * 109.47463 * 119.99891 * 2 1 3 6 6 C 1.53002 * 109.47125 * 63.94625 * 5 2 1 7 7 H 1.08998 * 109.47745 * 178.75891 * 6 5 2 8 8 C 1.50707 * 109.47064 * 298.76015 * 6 5 2 9 9 H 1.07995 * 120.00043 * 114.00321 * 8 6 5 10 10 C 1.37877 * 119.99278 * 294.00605 * 8 6 5 11 11 N 1.31521 * 119.99384 * 180.27619 * 10 8 6 12 12 Si 1.86795 * 120.00536 * 359.97438 * 10 8 6 13 13 H 1.48507 * 109.47010 * 90.00264 * 12 10 8 14 14 H 1.48501 * 109.47253 * 210.00105 * 12 10 8 15 15 H 1.48499 * 109.47300 * 330.00454 * 12 10 8 16 16 O 1.42905 * 109.46976 * 58.75296 * 6 5 2 17 17 C 1.34948 * 116.99506 * 92.17980 * 16 6 5 18 18 N 1.31791 * 120.30554 * 354.26676 * 17 16 6 19 19 C 1.33185 * 120.99523 * 179.71822 * 18 17 16 20 20 N 1.31248 * 121.31886 * 0.57201 * 19 18 17 21 21 C 1.34347 * 120.03909 * 359.71581 * 20 19 18 22 22 C 1.38284 * 133.69489 * 180.02562 * 21 20 19 23 23 C 1.39008 * 107.61609 * 179.97438 * 22 21 20 24 24 N 1.31297 * 108.97309 * 0.02562 * 23 22 21 25 25 N 1.36550 * 120.30288 * 174.54611 * 17 16 6 26 26 H 1.08996 * 109.47213 * 280.64637 * 1 2 3 27 27 H 1.08997 * 109.47465 * 40.65609 * 1 2 3 28 28 H 1.09006 * 109.47201 * 160.65521 * 1 2 3 29 29 H 1.09004 * 109.46508 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47155 * 299.99971 * 3 2 1 31 31 H 1.08995 * 109.47029 * 60.00580 * 3 2 1 32 32 H 1.09002 * 109.46591 * 321.19431 * 4 2 1 33 33 H 1.09005 * 109.46791 * 81.19285 * 4 2 1 34 34 H 1.09000 * 109.46616 * 201.19293 * 4 2 1 35 35 H 1.08994 * 109.47725 * 303.94589 * 5 2 1 36 36 H 1.09003 * 109.47221 * 183.93930 * 5 2 1 37 37 H 0.97000 * 119.99561 * 179.72195 * 11 10 8 38 38 H 1.08002 * 119.34047 * 180.28777 * 19 18 17 39 39 H 1.07994 * 126.19051 * 359.97438 * 22 21 20 40 40 H 1.08008 * 125.51842 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9585 1.3851 0.0000 4 6 1.9587 -0.6924 -1.1996 5 6 1.9587 -0.6924 1.1994 6 6 1.5314 -2.1608 1.1508 7 1 1.9135 -2.6798 2.0298 8 6 0.0269 -2.2458 1.1317 9 1 -0.4813 -2.6303 0.2598 10 6 -0.7008 -1.8324 2.2275 11 7 -2.0135 -1.9116 2.2130 12 14 0.1782 -1.1678 3.7358 13 1 0.3453 0.3019 3.6038 14 1 -0.6243 -1.4678 4.9487 15 1 1.5124 -1.8090 3.8539 16 8 2.0579 -2.7712 -0.0292 17 6 3.2566 -3.3814 0.0794 18 7 3.9436 -3.3027 1.2014 19 6 5.1255 -3.9041 1.3255 20 7 5.6518 -4.5851 0.3347 21 6 4.9946 -4.6914 -0.8322 22 6 5.2731 -5.3209 -2.0316 23 6 4.2063 -5.0816 -2.8900 24 7 3.3140 -4.3466 -2.2674 25 7 3.7715 -4.0812 -0.9740 26 1 -0.3633 0.1898 1.0099 27 1 -0.3634 0.7796 -0.6695 28 1 -0.3634 -0.9697 -0.3404 29 1 3.0486 1.3851 -0.0005 30 1 1.5952 1.8989 -0.8900 31 1 1.5953 1.8988 0.8900 32 1 1.3247 -1.5549 -1.4054 33 1 1.9314 -0.0103 -2.0494 34 1 2.9831 -1.0257 -1.0338 35 1 1.5389 -0.2211 2.0880 36 1 3.0464 -0.6317 1.2353 37 1 -2.5252 -1.6246 2.9854 38 1 5.6636 -3.8260 2.2587 39 1 6.1591 -5.8947 -2.2599 40 1 4.1249 -5.4411 -3.9052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228043923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:49 Heat of formation + Delta-G solvation = 227.386179 kcal Electronic energy + Delta-G solvation = -25148.583491 eV Core-core repulsion = 21700.384403 eV Total energy + Delta-G solvation = -3448.199088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.85942 -43.11894 -40.58721 -39.32408 -35.74663 -34.68892 -33.50275 -32.40288 -30.54215 -29.78429 -29.66963 -28.02043 -26.30630 -25.43288 -24.29723 -23.48994 -22.43255 -20.75378 -20.10206 -19.21432 -18.37676 -18.17039 -18.04478 -17.75817 -17.25222 -16.87761 -16.21658 -15.99747 -15.40092 -15.15677 -14.82750 -14.61761 -14.36068 -14.32959 -14.06260 -13.94015 -13.65623 -13.43902 -13.30616 -13.21058 -13.12388 -12.94439 -12.80240 -12.36380 -12.02730 -11.95705 -11.74531 -11.45845 -11.23429 -10.96074 -10.90527 -9.19469 -8.58342 -6.68949 -0.67947 -0.31328 0.13068 0.85199 1.07711 1.31448 1.39988 1.53134 1.74934 2.08001 2.29960 2.38606 2.60193 2.74020 2.79834 2.90562 2.99342 3.34168 3.61846 3.75667 3.95937 4.00132 4.04734 4.12791 4.24494 4.27508 4.34772 4.38253 4.50770 4.56123 4.61973 4.69243 4.72357 4.82695 4.90070 5.04816 5.13795 5.25561 5.43954 5.44910 5.92896 6.24657 6.39122 6.74540 6.88848 8.51719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.245 5.245 3 C -0.051 4.051 4 C -0.028 4.028 5 C -0.022 4.022 6 C 0.180 3.820 7 H 0.087 0.913 8 C -0.547 4.547 9 H 0.069 0.931 10 C 0.060 3.940 11 N -0.897 5.897 12 Si 0.878 3.122 13 H -0.221 1.221 14 H -0.309 1.309 15 H -0.230 1.230 16 O -0.270 6.270 17 C 0.600 3.400 18 N -0.595 5.595 19 C 0.369 3.631 20 N -0.540 5.540 21 C 0.260 3.740 22 C -0.257 4.257 23 C 0.114 3.886 24 N -0.319 5.319 25 N -0.363 5.363 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.142 0.858 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.145 0.855 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.278 0.722 38 H 0.256 0.744 39 H 0.187 0.813 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.182 11.380 -6.780 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 N 0.097 4.903 3 C -0.191 4.191 4 C -0.169 4.169 5 C -0.145 4.145 6 C 0.124 3.876 7 H 0.104 0.896 8 C -0.584 4.584 9 H 0.087 0.913 10 C -0.146 4.146 11 N -0.531 5.531 12 Si 0.701 3.299 13 H -0.145 1.145 14 H -0.237 1.237 15 H -0.153 1.153 16 O -0.167 6.167 17 C 0.297 3.703 18 N -0.340 5.340 19 C 0.076 3.924 20 N -0.263 5.263 21 C 0.035 3.965 22 C -0.288 4.288 23 C -0.068 4.068 24 N -0.142 5.142 25 N -0.151 5.151 26 H 0.112 0.888 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.161 0.839 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.163 0.837 34 H 0.109 0.891 35 H 0.141 0.859 36 H 0.162 0.838 37 H 0.089 0.911 38 H 0.272 0.728 39 H 0.204 0.796 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 10.130 12.034 -6.404 16.984 hybrid contribution -0.035 -0.859 0.845 1.206 sum 10.096 11.175 -5.559 16.053 Atomic orbital electron populations 1.24549 0.75528 1.09375 1.07571 1.45662 1.15925 1.15320 1.13372 1.24428 1.05898 0.78471 1.10296 1.24194 1.03357 1.01878 0.87519 1.24607 1.04483 0.95985 0.89388 1.20992 0.94042 0.88468 0.84061 0.89595 1.20547 0.86985 1.46945 1.03909 0.91257 1.25216 0.94685 0.95486 0.99236 1.69881 1.07020 1.44136 1.32076 0.86928 0.80962 0.81879 0.80095 1.14477 1.23666 1.15291 1.86425 1.26673 1.64149 1.39424 1.20836 0.86718 0.82116 0.80664 1.69133 1.13594 1.33043 1.18218 1.25785 0.85750 0.82936 0.97905 1.68842 1.34390 1.23961 0.99139 1.21212 0.82576 0.96710 0.95975 1.21511 1.05327 1.11742 0.90261 1.24835 0.88937 0.91566 1.01501 1.77913 1.23485 1.25403 0.87366 1.47792 1.17586 1.37724 1.11961 0.88845 0.85626 0.86023 0.85222 0.83935 0.86008 0.87510 0.83660 0.89086 0.85876 0.83819 0.91149 0.72814 0.79559 0.74144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.32 6.90 127.69 0.88 1.20 16 2 N -0.25 4.22 0.05 ******* -0.07 4.15 16 3 C -0.05 1.35 7.85 127.69 1.00 2.35 16 4 C -0.03 0.47 6.99 127.69 0.89 1.36 16 5 C -0.02 0.23 3.79 86.31 0.33 0.56 16 6 C 0.18 0.21 1.67 29.85 0.05 0.26 16 7 H 0.09 0.42 5.66 -2.39 -0.01 0.40 16 8 C -0.55 -5.81 5.88 25.60 0.15 -5.66 16 9 H 0.07 1.24 7.28 -2.91 -0.02 1.22 16 10 C 0.06 0.88 3.95 84.65 0.33 1.22 16 11 N -0.90 -20.82 13.96 21.45 0.30 -20.52 16 12 Si 0.88 7.60 24.19 68.60 1.66 9.26 16 13 H -0.22 -0.27 6.88 99.48 0.68 0.41 16 14 H -0.31 -5.19 7.11 99.48 0.71 -4.48 16 15 H -0.23 -1.20 6.37 99.48 0.63 -0.56 16 16 O -0.27 -0.38 5.75 -82.17 -0.47 -0.85 16 17 C 0.60 1.67 8.03 179.40 1.44 3.11 16 18 N -0.60 -0.10 8.80 -316.48 -2.78 -2.88 16 19 C 0.37 -0.57 12.34 180.62 2.23 1.66 16 20 N -0.54 -2.01 10.55 -197.96 -2.09 -4.10 16 21 C 0.26 1.31 7.97 132.80 1.06 2.37 16 22 C -0.26 -0.22 10.91 22.47 0.25 0.02 16 23 C 0.11 -0.15 11.95 84.96 1.02 0.86 16 24 N -0.32 -1.40 12.66 -57.34 -0.73 -2.13 16 25 N -0.36 -1.80 3.94 -307.64 -1.21 -3.02 16 26 H 0.09 -0.53 5.60 -2.39 -0.01 -0.54 16 27 H 0.13 -2.30 7.80 -2.39 -0.02 -2.32 16 28 H 0.12 -0.29 4.50 -2.38 -0.01 -0.30 16 29 H 0.13 -3.81 8.12 -2.38 -0.02 -3.83 16 30 H 0.14 -4.36 7.87 -2.39 -0.02 -4.37 16 31 H 0.12 -3.24 8.14 -2.39 -0.02 -3.26 16 32 H 0.11 -0.95 5.76 -2.39 -0.01 -0.96 16 33 H 0.15 -3.45 7.77 -2.38 -0.02 -3.47 16 34 H 0.09 -1.37 6.63 -2.39 -0.02 -1.39 16 35 H 0.12 -1.21 3.84 -2.39 -0.01 -1.22 16 36 H 0.14 -2.34 8.05 -2.39 -0.02 -2.36 16 37 H 0.28 6.40 8.31 -92.71 -0.77 5.63 16 38 H 0.26 -2.70 8.06 -2.91 -0.02 -2.72 16 39 H 0.19 -0.63 8.06 -2.91 -0.02 -0.65 16 40 H 0.24 -2.52 8.06 -2.91 -0.02 -2.54 16 Total: 0.00 -43.31 307.99 5.20 -38.11 By element: Atomic # 1 Polarization: -28.30 SS G_CDS: 0.97 Total: -27.33 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 9.62 Total: 9.32 kcal Atomic # 7 Polarization: -21.91 SS G_CDS: -6.58 Total: -28.50 kcal Atomic # 8 Polarization: -0.38 SS G_CDS: -0.47 Total: -0.85 kcal Atomic # 14 Polarization: 7.60 SS G_CDS: 1.66 Total: 9.26 kcal Total: -43.31 5.20 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228043923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 265.494 kcal (2) G-P(sol) polarization free energy of solvation -43.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 222.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 227.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds