Wall clock time and date at job start Tue Mar 31 2020 03:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47237 * 270.00091 * 3 2 1 5 5 H 1.48506 * 109.47030 * 29.99560 * 3 2 1 6 6 H 1.48496 * 109.47404 * 149.99892 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00560 * 197.01470 * 7 2 1 9 9 N 1.36943 * 119.99782 * 17.00985 * 7 2 1 10 10 C 1.47085 * 120.87943 * 26.59509 * 9 7 2 11 11 C 1.53233 * 108.51968 * 128.79060 * 10 9 7 12 12 N 1.46898 * 109.34305 * 53.82976 * 11 10 9 13 13 C 1.46898 * 111.00219 * 172.74287 * 12 11 10 14 14 C 1.53004 * 109.47128 * 169.99790 * 13 12 11 15 15 N 1.46497 * 109.47064 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99868 * 179.97438 * 15 14 13 17 17 O 1.21692 * 120.00104 * 0.02562 * 16 15 14 18 18 C 1.46678 * 119.99685 * 180.02562 * 16 15 14 19 19 C 1.37872 * 126.23135 * 179.97438 * 18 16 15 20 20 C 1.39835 * 107.08616 * 180.02562 * 19 18 16 21 21 C 1.35455 * 107.86522 * 0.02562 * 20 19 18 22 22 N 1.35532 * 108.86964 * 359.72987 * 21 20 19 23 23 H 0.96997 * 125.68068 * 180.30850 * 22 21 20 24 24 C 1.46896 * 111.26664 * 296.89539 * 12 11 10 25 25 C 1.47074 * 120.88324 * 206.56687 * 9 7 2 26 26 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.62639 * 9.08066 * 10 9 7 28 28 H 1.09002 * 109.78568 * 248.59437 * 10 9 7 29 29 H 1.09004 * 109.49031 * 173.78586 * 11 10 9 30 30 H 1.08997 * 109.49877 * 293.86299 * 11 10 9 31 31 H 1.09000 * 109.47322 * 289.99896 * 13 12 11 32 32 H 1.09000 * 109.47323 * 50.00046 * 13 12 11 33 33 H 1.09000 * 109.47106 * 300.00238 * 14 13 12 34 34 H 1.08997 * 109.47061 * 60.00405 * 14 13 12 35 35 H 0.97002 * 120.00404 * 0.02562 * 15 14 13 36 36 H 1.07999 * 126.46088 * 0.04422 * 19 18 16 37 37 H 1.08006 * 126.06973 * 179.97438 * 20 19 18 38 38 H 1.07998 * 125.56456 * 180.02562 * 21 20 19 39 39 H 1.09005 * 109.49472 * 303.13919 * 24 12 11 40 40 H 1.09000 * 109.49394 * 183.06639 * 24 12 11 41 41 H 1.09005 * 109.63035 * 350.91919 * 25 9 7 42 42 H 1.08997 * 109.62936 * 111.49710 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2742 9 7 1.3705 -2.3622 -0.3459 10 6 0.2048 -2.3427 -1.2427 11 6 0.4410 -3.3533 -2.3700 12 7 0.7559 -4.6653 -1.7892 13 6 0.8201 -5.7001 -2.8299 14 6 1.3893 -6.9889 -2.2333 15 7 1.4527 -8.0210 -3.2710 16 6 1.9251 -9.2477 -2.9734 17 8 2.2985 -9.4981 -1.8425 18 6 1.9891 -10.2809 -4.0126 19 6 2.4472 -11.5713 -3.8516 20 6 2.3312 -12.2061 -5.0921 21 6 1.8163 -11.3122 -5.9699 22 7 1.5987 -10.1402 -5.3250 23 1 1.2306 -9.3356 -5.7225 24 6 2.0031 -4.6196 -1.0146 25 6 1.8311 -3.6609 0.1684 26 1 -0.4850 0.8401 0.0004 27 1 0.0842 -1.3450 -1.6646 28 1 -0.6925 -2.6164 -0.6875 29 1 -0.4579 -3.4326 -2.9816 30 1 1.2741 -3.0200 -2.9888 31 1 -0.1815 -5.8898 -3.2160 32 1 1.4638 -5.3601 -3.6412 33 1 2.3908 -6.7992 -1.8472 34 1 0.7456 -7.3290 -1.4221 35 1 1.1555 -7.8213 -4.1725 36 1 2.8243 -12.0093 -2.9393 37 1 2.6045 -13.2277 -5.3116 38 1 1.6082 -11.5038 -7.0122 39 1 2.8147 -4.2687 -1.6521 40 1 2.2374 -5.6172 -0.6432 41 1 2.7856 -3.5347 0.6793 42 1 1.0921 -4.0633 0.8613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690068999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:29 Heat of formation + Delta-G solvation = 48.926754 kcal Electronic energy + Delta-G solvation = -22804.677781 eV Core-core repulsion = 19400.510283 eV Total energy + Delta-G solvation = -3404.167497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55564 -39.38311 -38.23025 -35.53479 -34.04451 -31.60890 -31.27846 -30.40096 -29.72288 -28.37986 -26.00683 -23.75054 -22.99074 -22.35459 -21.35770 -20.81177 -20.35855 -19.27294 -18.98187 -16.91139 -16.23283 -15.87524 -15.81726 -15.03221 -14.81945 -14.47573 -14.28342 -14.05229 -13.96731 -13.66787 -13.49433 -13.37413 -13.05976 -12.84649 -12.60229 -12.49052 -11.73023 -11.43273 -11.37947 -11.05817 -10.75238 -10.48714 -10.37766 -10.28714 -10.06900 -9.76311 -9.64714 -9.36018 -9.29267 -8.56068 -8.52001 -7.91542 -6.68304 -5.79169 -3.20323 1.18516 2.43443 2.71871 2.87057 3.18760 3.36924 3.43896 3.45349 4.35399 4.49683 4.57103 4.68718 4.84275 5.02191 5.06244 5.14262 5.37719 5.39555 5.44396 5.73520 5.77844 5.81708 5.86352 5.88664 5.96172 6.10420 6.14660 6.18848 6.30729 6.36405 6.50458 6.57439 6.66457 6.92321 6.97255 7.20120 7.24691 7.49876 7.59478 7.66382 7.79905 7.95549 8.42364 9.20269 9.83505 10.41955 11.29782 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.045290 B = 0.002504 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.088768 B =11177.734598 C =11382.514957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.067 0.933 9 N -0.596 5.596 10 C 0.178 3.822 11 C 0.037 3.963 12 N -0.527 5.527 13 C 0.044 3.956 14 C 0.116 3.884 15 N -0.730 5.730 16 C 0.587 3.413 17 O -0.525 6.525 18 C -0.055 4.055 19 C -0.107 4.107 20 C -0.213 4.213 21 C 0.021 3.979 22 N -0.541 5.541 23 H 0.416 0.584 24 C 0.034 3.966 25 C 0.148 3.852 26 H 0.254 0.746 27 H 0.089 0.911 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.392 0.608 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.171 0.829 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 -19.981 -14.326 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.051 3.949 11 C -0.092 4.092 12 N -0.253 5.253 13 C -0.085 4.085 14 C -0.007 4.007 15 N -0.381 5.381 16 C 0.374 3.626 17 O -0.401 6.401 18 C -0.168 4.168 19 C -0.134 4.134 20 C -0.237 4.237 21 C -0.115 4.115 22 N -0.137 5.137 23 H 0.253 0.747 24 C -0.095 4.095 25 C 0.022 3.978 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.225 0.775 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.188 0.812 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.124 -19.926 -13.141 23.895 hybrid contribution 0.674 1.538 -1.393 2.182 sum 1.798 -18.387 -14.534 23.507 Atomic orbital electron populations 1.70029 1.05188 1.25465 1.54171 1.25030 0.95335 0.98371 1.01080 0.86271 0.79109 0.83664 0.77619 1.21545 1.21732 1.20449 1.19218 0.92619 0.84754 1.41482 0.91577 1.44135 1.34097 1.01321 1.52358 1.20862 0.89079 0.96510 0.88404 1.22926 0.98650 0.88922 0.98738 1.62033 1.34496 1.05743 1.22989 1.22254 1.00369 0.91613 0.94216 1.21622 1.02431 0.86300 0.90374 1.45867 1.66158 1.12145 1.13946 1.17047 0.77623 0.80916 0.86993 1.90868 1.48280 1.80296 1.20673 1.20498 1.14120 0.97648 0.84536 1.21369 1.01462 0.91619 0.98910 1.20932 1.09068 1.00445 0.93246 1.22056 1.05001 0.85605 0.98851 1.42047 1.49728 1.13133 1.08828 0.74725 1.22812 0.89606 0.99945 0.97178 1.20987 0.97913 0.86372 0.92576 0.93617 0.89253 0.95453 0.92074 0.95570 0.90697 0.95024 0.90565 0.90095 0.77520 0.83410 0.83859 0.81180 0.95317 0.91182 0.92507 0.95496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 11.15 55.49 0.62 -25.63 16 2 C 0.00 0.01 4.93 -17.43 -0.09 -0.08 16 3 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.94 9.63 -15.06 -0.15 -7.09 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 9 N -0.60 -15.16 3.04 -172.02 -0.52 -15.68 16 10 C 0.18 4.26 5.42 -3.60 -0.02 4.24 16 11 C 0.04 0.70 5.58 -3.70 -0.02 0.68 16 12 N -0.53 -9.09 4.78 -234.33 -1.12 -10.21 16 13 C 0.04 0.57 5.38 -3.82 -0.02 0.55 16 14 C 0.12 1.46 4.93 -4.04 -0.02 1.44 16 15 N -0.73 -7.54 5.55 -61.62 -0.34 -7.88 16 16 C 0.59 7.39 7.79 -12.85 -0.10 7.29 16 17 O -0.53 -8.73 16.88 5.20 0.09 -8.65 16 18 C -0.06 -0.57 7.06 -81.98 -0.58 -1.15 16 19 C -0.11 -1.09 10.65 -39.12 -0.42 -1.51 16 20 C -0.21 -1.64 10.81 -39.98 -0.43 -2.07 16 21 C 0.02 0.12 11.89 -16.91 -0.20 -0.08 16 22 N -0.54 -3.57 5.99 -9.39 -0.06 -3.63 16 23 H 0.42 1.49 8.19 -40.82 -0.33 1.16 16 24 C 0.03 0.61 5.04 -3.70 -0.02 0.59 16 25 C 0.15 3.19 6.69 -3.61 -0.02 3.17 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.08 1.06 6.18 -51.93 -0.32 0.74 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.39 2.75 7.60 -40.82 -0.31 2.44 16 36 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 38 H 0.17 0.43 8.06 -52.49 -0.42 0.00 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 1.12 5.73 -51.93 -0.30 0.82 16 41 H 0.06 1.18 7.95 -51.93 -0.41 0.77 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -33.71 341.28 -9.49 -43.20 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.19 Total: 0.66 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -2.08 Total: 5.98 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -1.42 Total: -63.03 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.71 -9.49 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690068999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.129 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds