Wall clock time and date at job start Tue Mar 31 2020 03:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47237 * 270.00091 * 3 2 1 5 5 H 1.48506 * 109.47030 * 29.99560 * 3 2 1 6 6 H 1.48496 * 109.47404 * 149.99892 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00560 * 197.01470 * 7 2 1 9 9 N 1.36943 * 119.99782 * 17.00985 * 7 2 1 10 10 C 1.47085 * 120.87943 * 26.59509 * 9 7 2 11 11 C 1.53233 * 108.51968 * 128.79060 * 10 9 7 12 12 N 1.46898 * 109.34305 * 53.82976 * 11 10 9 13 13 C 1.46898 * 111.00219 * 172.74287 * 12 11 10 14 14 C 1.53004 * 109.47128 * 169.99790 * 13 12 11 15 15 N 1.46497 * 109.47064 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99868 * 179.97438 * 15 14 13 17 17 O 1.21692 * 120.00104 * 0.02562 * 16 15 14 18 18 C 1.46678 * 119.99685 * 180.02562 * 16 15 14 19 19 C 1.37872 * 126.23135 * 179.97438 * 18 16 15 20 20 C 1.39835 * 107.08616 * 180.02562 * 19 18 16 21 21 C 1.35455 * 107.86522 * 0.02562 * 20 19 18 22 22 N 1.35532 * 108.86964 * 359.72987 * 21 20 19 23 23 H 0.96997 * 125.68068 * 180.30850 * 22 21 20 24 24 C 1.46896 * 111.26664 * 296.89539 * 12 11 10 25 25 C 1.47074 * 120.88324 * 206.56687 * 9 7 2 26 26 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.62639 * 9.08066 * 10 9 7 28 28 H 1.09002 * 109.78568 * 248.59437 * 10 9 7 29 29 H 1.09004 * 109.49031 * 173.78586 * 11 10 9 30 30 H 1.08997 * 109.49877 * 293.86299 * 11 10 9 31 31 H 1.09000 * 109.47322 * 289.99896 * 13 12 11 32 32 H 1.09000 * 109.47323 * 50.00046 * 13 12 11 33 33 H 1.09000 * 109.47106 * 300.00238 * 14 13 12 34 34 H 1.08997 * 109.47061 * 60.00405 * 14 13 12 35 35 H 0.97002 * 120.00404 * 0.02562 * 15 14 13 36 36 H 1.07999 * 126.46088 * 0.04422 * 19 18 16 37 37 H 1.08006 * 126.06973 * 179.97438 * 20 19 18 38 38 H 1.07998 * 125.56456 * 180.02562 * 21 20 19 39 39 H 1.09005 * 109.49472 * 303.13919 * 24 12 11 40 40 H 1.09000 * 109.49394 * 183.06639 * 24 12 11 41 41 H 1.09005 * 109.63035 * 350.91919 * 25 9 7 42 42 H 1.08997 * 109.62936 * 111.49710 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2742 9 7 1.3705 -2.3622 -0.3459 10 6 0.2048 -2.3427 -1.2427 11 6 0.4410 -3.3533 -2.3700 12 7 0.7559 -4.6653 -1.7892 13 6 0.8201 -5.7001 -2.8299 14 6 1.3893 -6.9889 -2.2333 15 7 1.4527 -8.0210 -3.2710 16 6 1.9251 -9.2477 -2.9734 17 8 2.2985 -9.4981 -1.8425 18 6 1.9891 -10.2809 -4.0126 19 6 2.4472 -11.5713 -3.8516 20 6 2.3312 -12.2061 -5.0921 21 6 1.8163 -11.3122 -5.9699 22 7 1.5987 -10.1402 -5.3250 23 1 1.2306 -9.3356 -5.7225 24 6 2.0031 -4.6196 -1.0146 25 6 1.8311 -3.6609 0.1684 26 1 -0.4850 0.8401 0.0004 27 1 0.0842 -1.3450 -1.6646 28 1 -0.6925 -2.6164 -0.6875 29 1 -0.4579 -3.4326 -2.9816 30 1 1.2741 -3.0200 -2.9888 31 1 -0.1815 -5.8898 -3.2160 32 1 1.4638 -5.3601 -3.6412 33 1 2.3908 -6.7992 -1.8472 34 1 0.7456 -7.3290 -1.4221 35 1 1.1555 -7.8213 -4.1725 36 1 2.8243 -12.0093 -2.9393 37 1 2.6045 -13.2277 -5.3116 38 1 1.6082 -11.5038 -7.0122 39 1 2.8147 -4.2687 -1.6521 40 1 2.2374 -5.6172 -0.6432 41 1 2.7856 -3.5347 0.6793 42 1 1.0921 -4.0633 0.8613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690068999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:29 Heat of formation + Delta-G solvation = 23.184895 kcal Electronic energy + Delta-G solvation = -22805.794031 eV Core-core repulsion = 19400.510283 eV Total energy + Delta-G solvation = -3405.283748 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20456 -40.40195 -39.64918 -36.94492 -35.49432 -33.33010 -32.12272 -31.80562 -30.84634 -29.57569 -27.60564 -25.34691 -24.33060 -23.66452 -22.58108 -21.47320 -21.06533 -20.84112 -19.90158 -18.75994 -17.40161 -16.88919 -16.81305 -16.68468 -16.01124 -15.85653 -15.50782 -15.28246 -15.25635 -14.94177 -14.69125 -14.61991 -14.52609 -14.01269 -13.52717 -13.19500 -13.17480 -13.03305 -13.00607 -12.63345 -12.46628 -12.30635 -12.05617 -11.92558 -11.53533 -11.50026 -11.31140 -10.60360 -10.30688 -9.95328 -9.32057 -9.18718 -8.70502 -7.89251 -5.34132 0.43931 1.46278 1.46690 1.56391 1.84463 1.90734 2.23778 2.33710 2.49607 3.04579 3.25966 3.64979 3.71428 3.90724 4.01515 4.26225 4.31158 4.34837 4.38976 4.42390 4.51814 4.54326 4.60690 4.67438 4.82440 4.85998 4.90515 5.00686 5.10866 5.15963 5.23357 5.28334 5.34986 5.59622 5.67693 5.73641 5.92213 6.09832 6.17815 6.35740 6.40058 6.60996 7.06529 7.11879 7.81854 8.36092 9.17614 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.045290 B = 0.002504 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.088768 B =11177.734598 C =11382.514957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.265 4.265 8 H 0.066 0.934 9 N -0.615 5.615 10 C 0.183 3.817 11 C 0.054 3.946 12 N -0.540 5.540 13 C 0.053 3.947 14 C 0.125 3.875 15 N -0.713 5.713 16 C 0.585 3.415 17 O -0.578 6.578 18 C -0.083 4.083 19 C -0.127 4.127 20 C -0.231 4.231 21 C 0.048 3.952 22 N -0.527 5.527 23 H 0.431 0.569 24 C 0.048 3.952 25 C 0.142 3.858 26 H 0.251 0.749 27 H 0.059 0.941 28 H -0.001 1.001 29 H 0.088 0.912 30 H 0.024 0.976 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.411 0.589 36 H 0.134 0.866 37 H 0.161 0.839 38 H 0.215 0.785 39 H 0.026 0.974 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.673 -21.091 -17.356 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.339 5.339 10 C 0.057 3.943 11 C -0.075 4.075 12 N -0.265 5.265 13 C -0.074 4.074 14 C 0.001 3.999 15 N -0.365 5.365 16 C 0.375 3.625 17 O -0.458 6.458 18 C -0.196 4.196 19 C -0.155 4.155 20 C -0.254 4.254 21 C -0.089 4.089 22 N -0.124 5.124 23 H 0.271 0.729 24 C -0.081 4.081 25 C 0.017 3.983 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.017 0.983 29 H 0.107 0.893 30 H 0.042 0.958 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.247 0.753 36 H 0.151 0.849 37 H 0.178 0.822 38 H 0.232 0.768 39 H 0.045 0.955 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.397 -21.038 -16.222 26.602 hybrid contribution 0.568 1.766 -0.477 1.915 sum 1.965 -19.272 -16.699 25.576 Atomic orbital electron populations 1.70189 1.06603 1.25918 1.55416 1.25805 0.96132 1.01500 1.01260 0.85227 0.77986 0.79360 0.77621 1.20991 1.22082 1.19508 1.19533 0.92870 0.85965 1.41099 0.91605 1.44425 1.34292 1.02053 1.53121 1.20657 0.87763 0.96581 0.89331 1.22589 0.99846 0.88533 0.96577 1.61916 1.34182 1.05755 1.24694 1.22241 1.02147 0.89923 0.93131 1.21356 1.01244 0.86683 0.90634 1.45606 1.65445 1.11031 1.14443 1.17382 0.76745 0.81586 0.86828 1.90834 1.50764 1.81261 1.22896 1.20113 1.16694 0.97069 0.85734 1.21545 1.01867 0.92321 0.99764 1.21231 1.09923 1.01790 0.92482 1.22764 1.01691 0.84289 1.00171 1.42024 1.48830 1.14170 1.07398 0.72855 1.22586 0.89931 0.99794 0.95795 1.21126 0.97396 0.85686 0.94118 0.93991 0.92239 0.98316 0.89340 0.95764 0.88424 0.93375 0.91901 0.91648 0.75253 0.84852 0.82155 0.76812 0.95542 0.89035 0.92334 0.96696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.76 11.15 21.65 0.24 -55.52 16 2 C -0.05 -2.92 4.93 84.86 0.42 -2.50 16 3 Si 0.97 45.15 29.59 68.60 2.03 47.17 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.26 -14.85 9.63 84.03 0.81 -14.04 16 8 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 9 N -0.61 -31.87 3.04 -698.15 -2.12 -33.99 16 10 C 0.18 8.94 5.42 86.35 0.47 9.41 16 11 C 0.05 1.97 5.58 86.38 0.48 2.45 16 12 N -0.54 -17.72 4.78 -895.28 -4.28 -22.00 16 13 C 0.05 1.22 5.38 86.30 0.46 1.69 16 14 C 0.12 2.94 4.93 86.38 0.43 3.36 16 15 N -0.71 -13.39 5.55 -467.08 -2.59 -15.98 16 16 C 0.59 14.46 7.79 86.45 0.67 15.14 16 17 O -0.58 -19.78 16.88 -4.32 -0.07 -19.85 16 18 C -0.08 -1.61 7.06 40.35 0.28 -1.33 16 19 C -0.13 -2.56 10.65 22.57 0.24 -2.31 16 20 C -0.23 -3.02 10.81 22.01 0.24 -2.79 16 21 C 0.05 0.38 11.89 83.48 0.99 1.37 16 22 N -0.53 -5.25 5.99 -183.62 -1.10 -6.35 16 23 H 0.43 1.38 8.19 -92.71 -0.76 0.62 16 24 C 0.05 1.68 5.04 86.38 0.44 2.11 16 25 C 0.14 6.21 6.69 86.35 0.58 6.79 16 26 H 0.25 14.43 8.31 -92.70 -0.77 13.65 16 27 H 0.06 3.24 6.12 -2.39 -0.01 3.23 16 28 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.09 2.76 8.11 -2.38 -0.02 2.74 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 33 H 0.06 1.68 6.18 -2.39 -0.01 1.66 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.41 4.45 7.60 -92.71 -0.70 3.75 16 36 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 37 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.22 -0.21 8.06 -2.91 -0.02 -0.24 16 39 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.09 2.82 5.73 -2.39 -0.01 2.80 16 41 H 0.06 2.47 7.95 -2.38 -0.02 2.45 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -76.41 341.28 -1.81 -78.22 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -0.42 Total: 8.95 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 6.51 Total: 19.35 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -9.85 Total: -133.84 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.07 Total: -19.85 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -76.41 -1.81 -78.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690068999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.404 kcal (2) G-P(sol) polarization free energy of solvation -76.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds