Wall clock time and date at job start Tue Mar 31 2020 03:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99746 * 2 1 4 4 H 1.48501 * 109.47323 * 240.00145 * 3 2 1 5 5 H 1.48502 * 109.47458 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47037 * 120.00040 * 3 2 1 7 7 C 1.38810 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99822 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00036 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00036 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.90934 * 23.74994 * 10 9 7 12 12 C 1.53781 * 113.61601 * 155.00639 * 10 9 7 13 13 C 1.53777 * 87.08481 * 89.11345 * 12 10 9 14 14 H 1.08996 * 113.61291 * 270.80265 * 13 12 10 15 15 C 1.53003 * 113.61209 * 139.97866 * 13 12 10 16 16 N 1.46499 * 109.46708 * 175.00014 * 15 13 12 17 17 C 1.34784 * 119.99893 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99649 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99774 * 179.72962 * 17 16 15 20 20 C 1.53003 * 109.46624 * 180.02562 * 19 17 16 21 21 C 1.50702 * 109.46956 * 179.97438 * 20 19 17 22 22 C 1.39866 * 126.04423 * 90.01995 * 21 20 19 23 23 N 1.30839 * 108.20487 * 179.97438 * 22 21 20 24 24 N 1.40083 * 108.20615 * 0.02562 * 23 22 21 25 25 H 0.96995 * 126.03729 * 180.02562 * 24 23 22 26 26 C 1.34948 * 107.92149 * 359.75480 * 24 23 22 27 27 C 1.53783 * 113.61415 * 252.50043 * 10 9 7 28 28 H 0.97001 * 119.99833 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99769 * 0.02562 * 9 7 2 30 30 H 1.09005 * 113.60976 * 334.56261 * 12 10 9 31 31 H 1.09003 * 113.69162 * 203.68096 * 12 10 9 32 32 H 1.08998 * 109.46692 * 55.00516 * 15 13 12 33 33 H 1.08994 * 109.47584 * 295.00380 * 15 13 12 34 34 H 0.97005 * 120.00261 * 0.02562 * 16 15 13 35 35 H 1.09001 * 109.46809 * 299.99238 * 19 17 16 36 36 H 1.08993 * 109.47525 * 59.99679 * 19 17 16 37 37 H 1.09001 * 109.46782 * 299.99104 * 20 19 17 38 38 H 1.08993 * 109.47555 * 59.99547 * 20 19 17 39 39 H 1.08002 * 125.89622 * 359.97438 * 22 21 20 40 40 H 1.08009 * 126.12283 * 180.24474 * 26 24 23 41 41 H 1.09003 * 113.61413 * 156.33698 * 27 10 9 42 42 H 1.08997 * 113.61481 * 25.43699 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0662 -3.5646 0.4038 12 6 1.2602 -4.8288 0.5948 13 6 0.7205 -5.0790 -0.8233 14 1 -0.1909 -4.5250 -1.0476 15 6 0.6198 -6.5616 -1.1879 16 7 -0.0120 -6.6992 -2.5024 17 6 -0.2067 -7.9234 -3.0317 18 8 0.1409 -8.9110 -2.4194 19 6 -0.8622 -8.0653 -4.3812 20 6 -0.9628 -9.5478 -4.7458 21 6 -1.6189 -9.6898 -6.0951 22 6 -0.9635 -9.7140 -7.3304 23 7 -1.8649 -9.8508 -8.2688 24 7 -3.1245 -9.9175 -7.6593 25 1 -3.9744 -10.0191 -8.1155 26 6 -2.9458 -9.8216 -6.3252 27 6 1.9992 -4.4020 -1.3444 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 0.4938 -4.5189 1.3053 31 1 1.8859 -5.6373 0.9730 32 1 0.0194 -7.0796 -0.4401 33 1 1.6185 -6.9972 -1.2173 34 1 -0.2903 -5.9094 -2.9919 35 1 -1.8614 -7.6313 -4.3471 36 1 -0.2658 -7.5459 -5.1312 37 1 0.0363 -9.9823 -4.7797 38 1 -1.5594 -10.0668 -3.9957 39 1 0.1026 -9.6336 -7.4833 40 1 -3.7231 -9.8437 -5.5755 41 1 2.8281 -5.0933 -1.4970 42 1 1.8295 -3.7478 -2.1995 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691526708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:07 Heat of formation + Delta-G solvation = 55.163018 kcal Electronic energy + Delta-G solvation = -21908.890296 eV Core-core repulsion = 18504.993224 eV Total energy + Delta-G solvation = -3403.897072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.49982 -39.76447 -38.49785 -34.70389 -34.13949 -33.19351 -31.63700 -30.33160 -29.50569 -27.28446 -25.06416 -24.44895 -23.51434 -22.30494 -21.64975 -20.51032 -20.11772 -18.40010 -18.09896 -17.38810 -16.78756 -15.95955 -15.76848 -15.01909 -14.84709 -14.79551 -14.37529 -14.19746 -13.89320 -13.59138 -13.27425 -12.98908 -12.82780 -12.63992 -12.28403 -12.20101 -11.91578 -11.42320 -11.31978 -11.04991 -10.84036 -10.82927 -10.49189 -10.22146 -10.10876 -9.99015 -9.76091 -9.70219 -9.45885 -8.96091 -8.88636 -8.79933 -7.01844 -5.82448 -3.11452 1.55690 2.42768 2.57276 2.67734 3.29803 3.41331 3.45889 3.46697 4.44272 4.54331 4.56518 4.70667 4.90529 4.99594 5.05960 5.09820 5.20966 5.25477 5.31876 5.43963 5.47591 5.53585 5.63521 5.71560 5.87439 5.95212 5.97131 6.01552 6.11354 6.21294 6.31430 6.36931 6.46378 6.59713 6.74068 6.90111 6.90971 7.03737 7.30821 7.56102 7.67034 8.26369 8.36886 9.47446 10.05090 10.39266 11.39945 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022507 B = 0.002274 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.786305 B =12308.247215 C =13084.221908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.148 4.148 13 C -0.119 4.119 14 H 0.092 0.908 15 C 0.130 3.870 16 N -0.726 5.726 17 C 0.508 3.492 18 O -0.549 6.549 19 C -0.136 4.136 20 C -0.024 4.024 21 C -0.235 4.235 22 C 0.056 3.944 23 N -0.298 5.298 24 N -0.480 5.480 25 H 0.439 0.561 26 C 0.060 3.940 27 C -0.168 4.168 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.402 0.598 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.184 0.816 40 H 0.176 0.824 41 H 0.067 0.933 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.645 -19.611 -11.290 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.188 4.188 13 C -0.138 4.138 14 H 0.110 0.890 15 C 0.007 3.993 16 N -0.377 5.377 17 C 0.295 3.705 18 O -0.427 6.427 19 C -0.176 4.176 20 C -0.063 4.063 21 C -0.246 4.246 22 C -0.131 4.131 23 N -0.120 5.120 24 N -0.188 5.188 25 H 0.282 0.718 26 C -0.088 4.088 27 C -0.209 4.209 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.236 0.764 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.201 0.799 40 H 0.193 0.807 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.475 -20.222 -12.067 24.177 hybrid contribution -0.419 1.398 0.349 1.500 sum -5.895 -18.824 -11.718 22.943 Atomic orbital electron populations 1.69650 1.05138 1.25904 1.57444 1.24764 0.95548 0.97797 1.02785 0.86241 0.78517 0.83356 0.77908 1.21210 1.21688 1.21191 1.19249 0.91103 0.83986 1.43029 0.91036 1.42158 1.05665 0.99430 1.87162 1.21057 0.95095 0.85589 0.92792 0.91991 1.23445 1.00504 0.99680 0.95170 1.22704 0.99509 0.93043 0.98553 0.88955 1.21459 0.97577 0.96878 0.83376 1.46138 1.62189 1.08314 1.21072 1.20757 0.78838 0.83103 0.87811 1.90689 1.51581 1.37605 1.62843 1.21698 1.02170 0.99279 0.94454 1.19582 1.01247 0.94217 0.91279 1.20186 0.92572 1.15524 0.96351 1.23895 0.99822 0.99117 0.90223 1.77342 0.88516 1.24240 1.21941 1.46315 1.08513 1.58858 1.05077 0.71776 1.22461 0.98374 1.01361 0.86567 1.23886 0.95698 0.99613 1.01722 0.93392 0.78123 0.91378 0.90477 0.91964 0.91674 0.76352 0.89084 0.88864 0.90338 0.90647 0.79950 0.80653 0.91414 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.15 5.31 -52.64 -0.28 -17.43 16 10 C 0.17 3.20 4.56 -67.12 -0.31 2.90 16 11 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 12 C -0.15 -2.34 7.39 -25.92 -0.19 -2.53 16 13 C -0.12 -1.74 3.63 -89.81 -0.33 -2.06 16 14 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 15 C 0.13 1.70 5.51 -4.04 -0.02 1.68 16 16 N -0.73 -8.34 5.56 -60.30 -0.33 -8.67 16 17 C 0.51 6.01 7.83 -10.98 -0.09 5.92 16 18 O -0.55 -8.51 15.98 5.56 0.09 -8.42 16 19 C -0.14 -1.12 5.68 -27.88 -0.16 -1.27 16 20 C -0.02 -0.20 4.99 -27.88 -0.14 -0.34 16 21 C -0.23 -1.87 5.35 -105.05 -0.56 -2.44 16 22 C 0.06 0.49 11.96 -17.37 -0.21 0.28 16 23 N -0.30 -2.92 12.70 30.62 0.39 -2.53 16 24 N -0.48 -3.34 7.36 30.45 0.22 -3.12 16 25 H 0.44 1.69 8.96 -182.62 -1.64 0.05 16 26 C 0.06 0.39 11.90 -17.22 -0.20 0.19 16 27 C -0.17 -2.74 7.43 -25.92 -0.19 -2.93 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.38 9.88 7.90 -40.82 -0.32 9.55 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.89 7.84 -51.93 -0.41 0.48 16 34 H 0.40 3.97 8.47 -40.82 -0.35 3.62 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 39 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.18 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -33.73 357.12 -9.21 -42.93 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -7.73 Total: 9.55 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.64 Total: -7.81 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.72 Total: -58.62 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.73 -9.21 -42.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691526708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.095 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds