Wall clock time and date at job start Tue Mar 31 2020 03:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99746 * 2 1 4 4 H 1.48501 * 109.47323 * 240.00145 * 3 2 1 5 5 H 1.48502 * 109.47458 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47037 * 120.00040 * 3 2 1 7 7 C 1.38810 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99822 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00036 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00036 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.90934 * 23.74994 * 10 9 7 12 12 C 1.53781 * 113.61601 * 155.00639 * 10 9 7 13 13 C 1.53777 * 87.08481 * 89.11345 * 12 10 9 14 14 H 1.08996 * 113.61291 * 270.80265 * 13 12 10 15 15 C 1.53003 * 113.61209 * 139.97866 * 13 12 10 16 16 N 1.46499 * 109.46708 * 175.00014 * 15 13 12 17 17 C 1.34784 * 119.99893 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99649 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99774 * 179.72962 * 17 16 15 20 20 C 1.53003 * 109.46624 * 180.02562 * 19 17 16 21 21 C 1.50702 * 109.46956 * 179.97438 * 20 19 17 22 22 C 1.39866 * 126.04423 * 90.01995 * 21 20 19 23 23 N 1.30839 * 108.20487 * 179.97438 * 22 21 20 24 24 N 1.40083 * 108.20615 * 0.02562 * 23 22 21 25 25 H 0.96995 * 126.03729 * 180.02562 * 24 23 22 26 26 C 1.34948 * 107.92149 * 359.75480 * 24 23 22 27 27 C 1.53783 * 113.61415 * 252.50043 * 10 9 7 28 28 H 0.97001 * 119.99833 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99769 * 0.02562 * 9 7 2 30 30 H 1.09005 * 113.60976 * 334.56261 * 12 10 9 31 31 H 1.09003 * 113.69162 * 203.68096 * 12 10 9 32 32 H 1.08998 * 109.46692 * 55.00516 * 15 13 12 33 33 H 1.08994 * 109.47584 * 295.00380 * 15 13 12 34 34 H 0.97005 * 120.00261 * 0.02562 * 16 15 13 35 35 H 1.09001 * 109.46809 * 299.99238 * 19 17 16 36 36 H 1.08993 * 109.47525 * 59.99679 * 19 17 16 37 37 H 1.09001 * 109.46782 * 299.99104 * 20 19 17 38 38 H 1.08993 * 109.47555 * 59.99547 * 20 19 17 39 39 H 1.08002 * 125.89622 * 359.97438 * 22 21 20 40 40 H 1.08009 * 126.12283 * 180.24474 * 26 24 23 41 41 H 1.09003 * 113.61413 * 156.33698 * 27 10 9 42 42 H 1.08997 * 113.61481 * 25.43699 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0662 -3.5646 0.4038 12 6 1.2602 -4.8288 0.5948 13 6 0.7205 -5.0790 -0.8233 14 1 -0.1909 -4.5250 -1.0476 15 6 0.6198 -6.5616 -1.1879 16 7 -0.0120 -6.6992 -2.5024 17 6 -0.2067 -7.9234 -3.0317 18 8 0.1409 -8.9110 -2.4194 19 6 -0.8622 -8.0653 -4.3812 20 6 -0.9628 -9.5478 -4.7458 21 6 -1.6189 -9.6898 -6.0951 22 6 -0.9635 -9.7140 -7.3304 23 7 -1.8649 -9.8508 -8.2688 24 7 -3.1245 -9.9175 -7.6593 25 1 -3.9744 -10.0191 -8.1155 26 6 -2.9458 -9.8216 -6.3252 27 6 1.9992 -4.4020 -1.3444 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 0.4938 -4.5189 1.3053 31 1 1.8859 -5.6373 0.9730 32 1 0.0194 -7.0796 -0.4401 33 1 1.6185 -6.9972 -1.2173 34 1 -0.2903 -5.9094 -2.9919 35 1 -1.8614 -7.6313 -4.3471 36 1 -0.2658 -7.5459 -5.1312 37 1 0.0363 -9.9823 -4.7797 38 1 -1.5594 -10.0668 -3.9957 39 1 0.1026 -9.6336 -7.4833 40 1 -3.7231 -9.8437 -5.5755 41 1 2.8281 -5.0933 -1.4970 42 1 1.8295 -3.7478 -2.1995 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691526708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:06 Heat of formation + Delta-G solvation = 31.412328 kcal Electronic energy + Delta-G solvation = -21909.920203 eV Core-core repulsion = 18504.993224 eV Total energy + Delta-G solvation = -3404.926980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.06538 -40.80971 -39.80692 -35.98292 -34.89331 -34.85840 -32.24188 -32.05648 -30.35533 -28.45162 -26.41110 -25.82691 -24.85913 -22.99770 -22.83877 -21.38003 -20.76663 -19.77604 -19.30989 -18.68535 -17.76410 -17.03405 -16.65694 -16.62853 -15.87412 -15.69013 -15.40421 -15.36738 -15.03261 -14.76641 -14.60736 -14.21878 -13.75269 -13.59145 -13.33902 -13.16872 -12.95788 -12.90008 -12.87482 -12.58475 -12.19288 -12.05312 -11.99078 -11.51325 -11.45785 -11.44224 -10.98739 -10.85840 -10.66451 -10.57250 -9.96282 -9.38433 -8.98553 -7.94405 -5.22441 1.01940 1.48885 1.51208 1.57256 1.76168 1.82135 2.11724 2.40332 2.56776 3.38131 3.73364 3.78100 3.83299 3.91891 4.04460 4.11025 4.19107 4.31870 4.34848 4.39416 4.45466 4.65129 4.74579 4.78344 4.80758 4.88741 4.95321 4.96271 5.02564 5.14639 5.30442 5.34534 5.39551 5.39910 5.52421 5.61429 5.69227 5.74259 6.29399 6.48810 6.66032 6.75418 7.34419 7.35390 8.11944 8.34236 9.28652 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022507 B = 0.002274 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.786305 B =12308.247215 C =13084.221908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.143 3.857 11 H 0.058 0.942 12 C -0.136 4.136 13 C -0.101 4.101 14 H 0.081 0.919 15 C 0.140 3.860 16 N -0.723 5.723 17 C 0.508 3.492 18 O -0.588 6.588 19 C -0.126 4.126 20 C -0.015 4.015 21 C -0.251 4.251 22 C 0.047 3.953 23 N -0.336 5.336 24 N -0.475 5.475 25 H 0.451 0.549 26 C 0.072 3.928 27 C -0.153 4.153 28 H 0.251 0.749 29 H 0.374 0.626 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.411 0.589 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.195 0.805 40 H 0.209 0.791 41 H 0.090 0.910 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.620 -20.378 -11.749 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.033 3.967 11 H 0.077 0.923 12 C -0.175 4.175 13 C -0.120 4.120 14 H 0.100 0.900 15 C 0.016 3.984 16 N -0.374 5.374 17 C 0.296 3.704 18 O -0.469 6.469 19 C -0.166 4.166 20 C -0.054 4.054 21 C -0.263 4.263 22 C -0.139 4.139 23 N -0.159 5.159 24 N -0.184 5.184 25 H 0.297 0.703 26 C -0.077 4.077 27 C -0.193 4.193 28 H 0.060 0.940 29 H 0.207 0.793 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.247 0.753 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.211 0.789 40 H 0.225 0.775 41 H 0.109 0.891 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.424 -21.018 -12.555 25.076 hybrid contribution -0.407 1.549 0.512 1.681 sum -5.831 -19.469 -12.043 23.624 Atomic orbital electron populations 1.69800 1.06521 1.26128 1.59488 1.25542 0.96392 1.01020 1.03792 0.85230 0.77202 0.79276 0.78161 1.20426 1.22266 1.20493 1.19634 0.91515 0.85227 1.41103 0.90622 1.42284 1.05316 1.00521 1.87640 1.21393 0.95023 0.84943 0.95386 0.92347 1.23350 0.99967 0.98603 0.95570 1.22479 0.98226 0.93905 0.97362 0.90025 1.21247 0.97733 0.95207 0.84241 1.46110 1.61839 1.08876 1.20574 1.21347 0.78069 0.82333 0.88626 1.90675 1.53287 1.38782 1.64125 1.21698 1.02987 0.99572 0.92332 1.19439 1.00530 0.94087 0.91394 1.20197 0.93243 1.17030 0.95801 1.24200 1.00506 0.98751 0.90464 1.77288 0.89691 1.25860 1.23109 1.46372 1.08438 1.58175 1.05401 0.70343 1.22968 0.98699 0.99187 0.86813 1.23703 0.97384 0.99183 0.99054 0.94018 0.79331 0.92454 0.87752 0.92105 0.91726 0.75282 0.87113 0.87557 0.91598 0.91120 0.78852 0.77475 0.89131 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.16 13.06 21.65 0.28 -57.88 16 2 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.42 29.55 68.60 2.03 47.44 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.24 -13.24 9.97 84.03 0.84 -12.40 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.72 -35.15 5.31 -320.45 -1.70 -36.86 16 10 C 0.14 5.35 4.56 45.52 0.21 5.56 16 11 H 0.06 2.21 8.10 -2.38 -0.02 2.19 16 12 C -0.14 -4.06 7.39 31.12 0.23 -3.83 16 13 C -0.10 -2.78 3.63 -10.27 -0.04 -2.82 16 14 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 15 C 0.14 3.36 5.51 86.38 0.48 3.84 16 16 N -0.72 -15.20 5.56 -463.06 -2.57 -17.77 16 17 C 0.51 11.13 7.83 87.65 0.69 11.81 16 18 O -0.59 -17.57 15.98 -3.04 -0.05 -17.61 16 19 C -0.13 -1.80 5.68 29.85 0.17 -1.63 16 20 C -0.02 -0.23 4.99 29.85 0.15 -0.08 16 21 C -0.25 -3.59 5.35 -20.14 -0.11 -3.70 16 22 C 0.05 0.77 11.96 85.23 1.02 1.79 16 23 N -0.34 -6.29 12.70 -57.02 -0.72 -7.01 16 24 N -0.47 -5.81 7.36 -57.58 -0.42 -6.23 16 25 H 0.45 2.71 8.96 -213.34 -1.91 0.80 16 26 C 0.07 0.76 11.90 83.54 0.99 1.76 16 27 C -0.15 -4.74 7.43 31.12 0.23 -4.51 16 28 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.37 19.56 7.90 -92.71 -0.73 18.82 16 30 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.10 2.58 8.10 -2.39 -0.02 2.56 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.61 7.84 -2.39 -0.02 1.59 16 34 H 0.41 7.26 8.47 -92.70 -0.79 6.47 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 38 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 39 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.21 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.09 2.42 7.90 -2.39 -0.02 2.40 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.75 357.12 -0.22 -72.97 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -2.38 Total: 30.95 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 5.32 Total: -7.99 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -5.14 Total: -125.75 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.05 Total: -17.61 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -72.75 -0.22 -72.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691526708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.377 kcal (2) G-P(sol) polarization free energy of solvation -72.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds