Wall clock time and date at job start Tue Mar 31 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46976 * 2 1 4 4 C 1.50700 * 109.47183 * 120.00098 * 2 1 3 5 5 C 1.38218 * 120.01331 * 100.00259 * 4 2 1 6 6 C 1.38217 * 120.02606 * 179.97438 * 5 4 2 7 7 C 1.38271 * 120.05335 * 359.97438 * 6 5 4 8 8 C 1.38169 * 120.02241 * 0.02562 * 7 6 5 9 9 C 1.38437 * 120.01102 * 279.95647 * 4 2 1 10 10 F 1.35093 * 120.02891 * 0.04270 * 9 4 2 11 11 N 1.46899 * 109.47141 * 240.00507 * 2 1 3 12 12 C 1.46960 * 110.99888 * 183.79845 * 11 2 1 13 13 C 1.53052 * 109.36524 * 176.80858 * 12 11 2 14 14 N 1.46955 * 109.36144 * 58.40072 * 13 12 11 15 15 C 1.46902 * 110.99875 * 176.81720 * 14 13 12 16 16 C 1.50700 * 109.47494 * 58.97275 * 15 14 13 17 17 H 1.07997 * 119.99827 * 5.02045 * 16 15 14 18 18 C 1.37876 * 119.99753 * 185.01178 * 16 15 14 19 19 N 1.31516 * 120.00494 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99758 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47039 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47323 * 119.99908 * 20 18 16 23 23 H 1.48495 * 109.46976 * 240.00018 * 20 18 16 24 24 C 1.46960 * 110.88197 * 300.67940 * 14 13 12 25 25 C 1.46951 * 111.00346 * 59.99572 * 11 2 1 26 26 H 1.09002 * 109.47293 * 299.99698 * 1 2 3 27 27 H 1.09002 * 109.47300 * 59.99918 * 1 2 3 28 28 H 1.09001 * 109.46976 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.98592 * 359.95584 * 5 4 2 30 30 H 1.08004 * 119.97446 * 179.97438 * 6 5 4 31 31 H 1.07997 * 119.98673 * 180.02562 * 7 6 5 32 32 H 1.08004 * 120.00950 * 179.74485 * 8 7 6 33 33 H 1.09002 * 109.48954 * 296.77590 * 12 11 2 34 34 H 1.09000 * 109.49133 * 56.83835 * 12 11 2 35 35 H 1.09001 * 109.48809 * 298.43160 * 13 12 11 36 36 H 1.08993 * 109.48904 * 178.36794 * 13 12 11 37 37 H 1.09004 * 109.47155 * 178.98242 * 15 14 13 38 38 H 1.09004 * 109.46541 * 298.97298 * 15 14 13 39 39 H 0.96994 * 120.00152 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.48954 * 299.35553 * 24 14 13 41 41 H 1.09000 * 109.49133 * 179.29308 * 24 14 13 42 42 H 1.09005 * 109.49108 * 303.16065 * 25 11 2 43 43 H 1.09000 * 109.48712 * 63.19894 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.4588 -2.0224 1.1456 6 6 2.9201 -2.6741 2.2738 7 6 2.9560 -2.0144 3.4885 8 6 2.5302 -0.7028 3.5757 9 6 2.0677 -0.0489 2.4460 10 9 1.6512 1.2335 2.5302 11 7 2.0196 -0.6924 -1.1995 12 6 3.4859 -0.7912 -1.1888 13 6 3.9498 -1.5863 -2.4115 14 7 3.4786 -0.9199 -3.6336 15 6 3.9682 -1.6124 -4.8331 16 6 3.4867 -3.0403 -4.8205 17 1 2.8121 -3.3759 -4.0468 18 6 3.9074 -3.9183 -5.7968 19 7 4.7293 -3.5097 -6.7388 20 14 3.3101 -5.6881 -5.7817 21 1 2.3995 -5.8934 -4.6266 22 1 2.5811 -5.9754 -7.0431 23 1 4.4742 -6.6024 -5.6635 24 6 2.0124 -0.8211 -3.6442 25 6 1.5484 -0.0260 -2.4215 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.4313 -2.5387 0.1974 30 1 3.2527 -3.6994 2.2066 31 1 3.3170 -2.5245 4.3693 32 1 2.5545 -0.1891 4.5254 33 1 3.9180 0.2090 -1.2201 34 1 3.8096 -1.2992 -0.2804 35 1 3.5398 -2.5952 -2.3662 36 1 5.0386 -1.6361 -2.4212 37 1 3.5900 -1.1091 -5.7230 38 1 5.0581 -1.5964 -4.8423 39 1 5.0249 -4.1273 -7.4259 40 1 1.5802 -1.8213 -3.6130 41 1 1.6887 -0.3130 -4.5526 42 1 0.4596 0.0238 -2.4118 43 1 1.9582 0.9830 -2.4666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071897094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:07 Heat of formation + Delta-G solvation = -19.626954 kcal Electronic energy + Delta-G solvation = -24004.674467 eV Core-core repulsion = 20577.614296 eV Total energy + Delta-G solvation = -3427.060171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.165 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.88863 -41.01122 -39.46393 -37.19889 -34.73605 -32.97051 -32.31855 -31.28465 -30.22016 -28.97243 -26.69630 -24.89811 -24.22617 -23.55459 -23.14433 -21.49921 -20.63767 -18.60062 -18.44851 -17.67127 -17.16980 -16.77595 -16.60249 -16.19870 -15.88432 -15.74444 -15.54911 -15.30658 -14.98541 -14.85505 -14.38239 -14.03655 -13.81653 -13.72469 -13.54353 -13.08943 -12.89955 -12.83245 -12.77193 -12.67599 -12.39959 -12.23986 -12.14637 -12.11097 -11.93553 -11.74745 -11.40549 -11.26387 -10.60535 -9.77451 -9.60359 -9.35656 -9.00854 -8.14499 -6.33963 0.21958 0.30929 1.36776 1.38402 1.50308 2.38322 2.66304 2.78968 3.10425 3.34930 3.38211 3.54267 3.91081 4.02076 4.09791 4.16307 4.22068 4.27733 4.41366 4.47956 4.49192 4.51708 4.56197 4.68704 4.74563 4.80980 4.94830 5.01377 5.06718 5.11435 5.16017 5.21466 5.24884 5.25983 5.27704 5.34191 5.45881 5.54746 5.74526 5.98468 6.02393 6.04885 6.11204 6.29512 6.52612 6.86833 7.37624 8.88257 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021397 B = 0.004091 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.293319 B = 6843.339014 C = 7489.554459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.124 3.876 3 H 0.043 0.957 4 C -0.121 4.121 5 C -0.084 4.084 6 C -0.133 4.133 7 C -0.089 4.089 8 C -0.157 4.157 9 C 0.080 3.920 10 F -0.148 7.148 11 N -0.532 5.532 12 C 0.062 3.938 13 C 0.071 3.929 14 N -0.545 5.545 15 C 0.200 3.800 16 C -0.551 4.551 17 H 0.058 0.942 18 C 0.012 3.988 19 N -0.928 5.928 20 Si 0.958 3.042 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.278 1.278 24 C 0.067 3.933 25 C 0.068 3.932 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.133 0.867 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.028 0.972 34 H 0.095 0.905 35 H 0.030 0.970 36 H 0.059 0.941 37 H 0.003 0.997 38 H 0.006 0.994 39 H 0.265 0.735 40 H 0.027 0.973 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 4.750 21.265 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.016 3.984 3 H 0.061 0.939 4 C -0.123 4.123 5 C -0.103 4.103 6 C -0.151 4.151 7 C -0.107 4.107 8 C -0.175 4.175 9 C 0.060 3.940 10 F -0.127 7.127 11 N -0.258 5.258 12 C -0.066 4.066 13 C -0.057 4.057 14 N -0.270 5.270 15 C 0.073 3.927 16 C -0.590 4.590 17 H 0.076 0.924 18 C -0.187 4.187 19 N -0.568 5.568 20 Si 0.783 3.217 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.203 1.203 24 C -0.062 4.062 25 C -0.060 4.060 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.151 0.849 30 H 0.164 0.836 31 H 0.179 0.821 32 H 0.171 0.829 33 H 0.047 0.953 34 H 0.113 0.887 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.021 0.979 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.650 4.772 21.107 22.639 hybrid contribution 0.029 -0.588 -0.794 0.989 sum -6.621 4.183 20.313 21.771 Atomic orbital electron populations 1.21804 0.91931 1.02871 1.02589 1.20390 0.96743 0.94250 0.87057 0.93913 1.19857 1.03067 0.95956 0.93374 1.21163 0.96228 0.93010 0.99851 1.21568 0.99835 1.01415 0.92320 1.21369 0.97220 0.93243 0.98821 1.21378 1.01802 0.96557 0.97804 1.17747 1.01943 0.79271 0.94996 1.91448 1.88183 1.36064 1.97008 1.62128 1.10096 1.51884 1.01653 1.22304 0.87371 0.98811 0.98082 1.21872 0.98790 0.95935 0.89144 1.62623 1.10034 1.51274 1.03021 1.19395 0.94367 0.91228 0.87685 1.21973 1.28436 0.97175 1.11426 0.92427 1.25809 0.94941 1.03021 0.94966 1.70074 1.34417 1.37058 1.15232 0.85512 0.78275 0.79786 0.78142 1.19094 1.20465 1.20346 1.21944 0.88344 0.98614 0.97316 1.22173 1.00672 0.95100 0.88034 0.91513 0.91048 0.91836 0.84905 0.83574 0.82093 0.82905 0.95324 0.88721 0.95142 0.92213 0.97926 0.97631 0.92646 0.95514 0.91632 0.88311 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.94 71.98 0.64 -2.27 16 2 C 0.12 3.13 2.01 44.17 0.09 3.22 16 3 H 0.04 1.15 7.95 -2.39 -0.02 1.13 16 4 C -0.12 -2.91 4.45 -19.82 -0.09 -3.00 16 5 C -0.08 -1.95 7.25 22.26 0.16 -1.79 16 6 C -0.13 -2.41 10.04 22.27 0.22 -2.18 16 7 C -0.09 -1.33 10.04 22.26 0.22 -1.10 16 8 C -0.16 -2.71 10.03 22.31 0.22 -2.49 16 9 C 0.08 1.79 7.24 22.38 0.16 1.95 16 10 F -0.15 -3.55 16.66 44.97 0.75 -2.80 16 11 N -0.53 -15.71 3.74 -874.88 -3.27 -18.99 16 12 C 0.06 1.98 4.72 86.31 0.41 2.38 16 13 C 0.07 2.84 5.24 86.31 0.45 3.29 16 14 N -0.55 -24.03 4.92 -900.28 -4.43 -28.46 16 15 C 0.20 10.70 5.14 85.56 0.44 11.14 16 16 C -0.55 -30.66 7.66 25.60 0.20 -30.46 16 17 H 0.06 3.18 5.82 -2.91 -0.02 3.17 16 18 C 0.01 0.67 5.46 84.65 0.46 1.13 16 19 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 20 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 24 C 0.07 2.59 5.32 86.31 0.46 3.05 16 25 C 0.07 2.07 5.32 86.31 0.46 2.53 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.42 6.34 -2.39 -0.02 1.41 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.13 3.52 6.46 -2.91 -0.02 3.50 16 30 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 2.72 4.98 -2.39 -0.01 2.71 16 35 H 0.03 1.32 6.62 -2.39 -0.02 1.31 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.00 0.15 8.12 -2.38 -0.02 0.13 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.03 1.15 6.78 -2.39 -0.02 1.14 16 41 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 42 H 0.10 2.54 6.14 -2.38 -0.01 2.53 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -63.26 336.96 0.87 -62.39 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.00 Total: 11.65 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 4.51 Total: -14.61 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -7.41 Total: -102.63 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.75 Total: -2.80 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -63.26 0.87 -62.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071897094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.764 kcal (2) G-P(sol) polarization free energy of solvation -63.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds