Wall clock time and date at job start Tue Mar 31 2020 03:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46733 * 2 1 4 4 N 1.28454 * 125.19058 * 274.45386 * 3 2 1 5 5 C 1.30856 * 110.92608 * 179.97438 * 4 3 2 6 6 C 1.50700 * 126.06527 * 180.02562 * 5 4 3 7 7 C 1.39672 * 107.86770 * 359.77288 * 5 4 3 8 8 C 1.36593 * 125.19421 * 94.43099 * 3 2 1 9 9 C 1.47166 * 126.88269 * 359.97438 * 8 3 2 10 10 O 1.21625 * 120.00117 * 334.97813 * 9 8 3 11 11 N 1.34780 * 120.00158 * 154.97707 * 9 8 3 12 12 C 1.46963 * 120.59726 * 173.18962 * 11 9 8 13 13 C 1.53368 * 108.63563 * 235.20483 * 12 11 9 14 14 N 1.46965 * 108.63302 * 310.57381 * 13 12 11 15 15 C 1.36933 * 120.59452 * 235.22274 * 14 13 12 16 16 H 1.08002 * 120.00014 * 29.66478 * 15 14 13 17 17 C 1.38810 * 120.00472 * 209.65887 * 15 14 13 18 18 N 1.31616 * 119.99978 * 17.25612 * 17 15 14 19 19 Si 1.86796 * 120.00149 * 197.25347 * 17 15 14 20 20 H 1.48501 * 109.47438 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47280 * 120.00353 * 19 17 15 22 22 H 1.48507 * 109.47067 * 239.99940 * 19 17 15 23 23 C 1.46964 * 118.81465 * 55.22616 * 14 13 12 24 24 C 1.46965 * 120.59170 * 353.16499 * 11 9 8 25 25 H 1.09001 * 109.47412 * 65.01514 * 1 2 3 26 26 H 1.09004 * 109.47072 * 185.01488 * 1 2 3 27 27 H 1.09000 * 109.47454 * 305.01403 * 1 2 3 28 28 H 1.08996 * 109.47392 * 240.00012 * 2 1 3 29 29 H 1.09001 * 109.46988 * 119.99489 * 2 1 3 30 30 H 1.09005 * 109.46905 * 89.97576 * 6 5 4 31 31 H 1.09002 * 109.47474 * 209.97291 * 6 5 4 32 32 H 1.09003 * 109.47379 * 329.97433 * 6 5 4 33 33 H 1.07990 * 127.32536 * 180.23265 * 7 5 4 34 34 H 1.09001 * 109.60833 * 354.94738 * 12 11 9 35 35 H 1.08997 * 109.61040 * 115.45658 * 12 11 9 36 36 H 1.08999 * 109.60759 * 70.31918 * 13 12 11 37 37 H 1.08993 * 109.60800 * 190.82997 * 13 12 11 38 38 H 0.96993 * 120.00745 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.61205 * 185.02881 * 23 14 13 40 40 H 1.09004 * 109.74985 * 64.60052 * 23 14 13 41 41 H 1.09005 * 109.60997 * 244.54209 * 24 11 9 42 42 H 1.09003 * 109.60993 * 5.04951 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.1881 2.1064 -1.0466 5 6 2.6338 3.2939 -0.7251 6 6 2.9493 4.4127 -1.6842 7 6 2.7598 3.3425 0.6651 8 6 2.3619 2.0947 1.1129 9 6 2.3125 1.6319 2.5090 10 8 1.5490 0.7402 2.8274 11 7 3.1132 2.1960 3.4348 12 6 2.9719 1.8510 4.8563 13 6 2.7594 3.1427 5.6554 14 7 3.7899 4.1135 5.2613 15 6 4.6038 4.6864 6.2018 16 1 4.8526 4.1450 7.1026 17 6 5.1092 5.9630 5.9975 18 7 4.5599 6.7522 5.0988 19 14 6.5688 6.5609 6.9982 20 1 6.9983 5.4915 7.9348 21 1 7.6898 6.8994 6.0849 22 1 6.1783 7.7675 7.7709 23 6 3.9314 4.4586 3.8398 24 6 4.1438 3.1668 3.0407 25 1 -0.3634 0.4341 -0.9315 26 1 -0.3633 -1.0238 0.0898 27 1 -0.3634 0.5896 0.8416 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0590 5.0232 -1.8357 31 1 3.7475 5.0303 -1.2722 32 1 3.2695 3.9940 -2.6383 33 1 3.0980 4.1756 1.2632 34 1 2.1130 1.1931 4.9894 35 1 3.8761 1.3508 5.2031 36 1 1.7716 3.5491 5.4379 37 1 2.8442 2.9315 6.7213 38 1 4.9132 7.6441 4.9557 39 1 4.7902 5.1165 3.7067 40 1 3.0287 4.9603 3.4909 41 1 5.1316 2.7604 3.2582 42 1 4.0590 3.3779 1.9747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085683448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:11 Heat of formation + Delta-G solvation = 84.569352 kcal Electronic energy + Delta-G solvation = -24326.309043 eV Core-core repulsion = 20923.687125 eV Total energy + Delta-G solvation = -3402.621918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.51019 -39.39314 -36.91770 -34.91992 -33.88916 -31.98952 -31.28847 -30.74189 -29.77949 -27.45302 -27.10323 -24.30808 -23.28229 -23.02315 -22.19286 -21.21492 -19.65508 -18.51646 -17.37344 -16.66110 -16.13218 -15.82204 -15.41097 -14.82107 -14.71864 -14.48562 -13.99518 -13.72990 -13.47481 -13.43304 -13.30859 -12.96378 -12.81460 -12.49548 -12.32500 -12.19170 -12.04729 -11.63892 -11.36180 -11.28329 -10.88833 -10.79635 -10.53561 -10.45717 -10.28935 -10.04594 -9.90151 -9.65233 -8.92132 -8.69122 -8.63712 -8.30425 -6.74250 -5.89762 -3.35098 1.46026 2.43218 2.64276 3.30821 3.34078 3.37942 3.40400 3.42560 4.41052 4.45470 4.62142 4.90398 4.93660 5.14072 5.15080 5.24218 5.30339 5.45152 5.53524 5.64476 5.69057 5.75442 5.76470 5.82967 5.88875 5.93378 6.01368 6.03480 6.10272 6.18271 6.29963 6.38575 6.62725 6.72547 6.85021 6.86748 7.14204 7.37942 7.68899 7.76391 8.16560 8.32523 8.37150 9.08097 9.70138 10.27850 11.18177 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021656 B = 0.004583 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.619627 B = 6108.667335 C = 7140.898477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 N -0.261 5.261 4 N -0.284 5.284 5 C 0.021 3.979 6 C -0.065 4.065 7 C -0.193 4.193 8 C -0.024 4.024 9 C 0.582 3.418 10 O -0.558 6.558 11 N -0.577 5.577 12 C 0.098 3.902 13 C 0.131 3.869 14 N -0.590 5.590 15 C -0.258 4.258 16 H 0.068 0.932 17 C 0.006 3.994 18 N -0.900 5.900 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.159 3.841 24 C 0.047 3.953 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.177 0.823 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.024 0.976 37 H 0.069 0.931 38 H 0.255 0.745 39 H 0.099 0.901 40 H 0.025 0.975 41 H 0.064 0.936 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 -8.966 -10.956 14.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.001 3.999 3 N -0.048 5.048 4 N -0.117 5.117 5 C -0.136 4.136 6 C -0.124 4.124 7 C -0.221 4.221 8 C -0.152 4.152 9 C 0.369 3.631 10 O -0.438 6.438 11 N -0.307 5.307 12 C -0.026 4.026 13 C 0.004 3.996 14 N -0.312 5.312 15 C -0.387 4.387 16 H 0.085 0.915 17 C -0.193 4.193 18 N -0.544 5.544 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.216 1.216 23 C 0.032 3.968 24 C -0.077 4.077 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.194 0.806 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.043 0.957 41 H 0.082 0.918 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.027 -10.073 -11.682 15.942 hybrid contribution 0.978 0.935 1.234 1.832 sum -3.049 -9.137 -10.448 14.211 Atomic orbital electron populations 1.22067 0.93445 1.03337 1.03152 1.21991 0.96335 0.76732 1.04869 1.45695 1.45005 1.12173 1.01958 1.73043 1.19968 1.04960 1.13763 1.22029 1.03795 0.93772 0.93973 1.20079 1.02108 0.93536 0.96668 1.22532 1.07161 0.97654 0.94759 1.21470 1.09618 0.94248 0.89904 1.16979 0.81014 0.81959 0.83171 1.90734 1.40791 1.30902 1.81347 1.47759 1.33556 1.42356 1.07054 1.22305 1.01863 0.99310 0.79094 1.21318 0.92358 0.88869 0.97082 1.43969 1.36520 1.48301 1.02459 1.19226 1.21992 0.96136 1.01386 0.91476 1.25090 1.00044 0.95217 0.98925 1.70018 1.40064 1.07610 1.36690 0.86225 0.82508 0.78474 0.79557 1.20187 1.21423 1.21644 1.21141 1.01625 0.91107 0.82884 1.23498 0.90059 0.92141 1.01971 0.92021 0.90394 0.91170 0.88770 0.87574 0.90946 0.90298 0.91278 0.80634 0.89851 0.91574 0.95765 0.91282 0.93475 0.88334 0.95653 0.91770 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.24 37.16 0.38 -1.41 16 2 C 0.12 1.46 6.50 -4.04 -0.03 1.43 16 3 N -0.26 -3.95 3.35 -57.14 -0.19 -4.15 16 4 N -0.28 -4.32 11.90 33.64 0.40 -3.92 16 5 C 0.02 0.30 7.22 -82.47 -0.60 -0.29 16 6 C -0.07 -0.69 10.45 36.01 0.38 -0.31 16 7 C -0.19 -2.99 8.68 -38.98 -0.34 -3.32 16 8 C -0.02 -0.40 6.56 -82.06 -0.54 -0.94 16 9 C 0.58 10.51 7.46 -12.63 -0.09 10.42 16 10 O -0.56 -10.69 14.76 5.26 0.08 -10.61 16 11 N -0.58 -10.51 2.95 -173.85 -0.51 -11.02 16 12 C 0.10 1.76 6.58 -3.60 -0.02 1.74 16 13 C 0.13 2.67 6.67 -3.60 -0.02 2.65 16 14 N -0.59 -14.03 2.96 -172.04 -0.51 -14.54 16 15 C -0.26 -6.72 9.56 -15.06 -0.14 -6.87 16 16 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 17 C 0.01 0.17 4.90 -17.43 -0.09 0.08 16 18 N -0.90 -24.75 11.30 55.49 0.63 -24.12 16 19 Si 0.90 20.72 29.59 -169.99 -5.03 15.69 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.16 3.50 5.28 -3.60 -0.02 3.48 16 24 C 0.05 0.84 5.98 -3.60 -0.02 0.82 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.11 1.34 6.76 -51.93 -0.35 0.99 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.18 2.66 5.81 -52.49 -0.30 2.35 16 34 H 0.08 1.44 7.03 -51.93 -0.37 1.07 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 38 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 39 H 0.10 2.38 6.10 -51.93 -0.32 2.07 16 40 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.10 1.64 3.16 -51.93 -0.16 1.48 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -30.48 336.67 -7.33 -37.81 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.11 Total: 2.30 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -1.15 Total: 7.48 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.19 Total: -57.75 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.48 -7.33 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085683448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.379 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds