Wall clock time and date at job start Tue Mar 31 2020 03:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47244 * 2 1 4 4 C 1.35512 * 116.99956 * 179.97438 * 3 2 1 5 5 C 1.39440 * 120.46294 * 179.97438 * 4 3 2 6 6 C 1.38191 * 118.50728 * 180.02562 * 5 4 3 7 7 C 1.50694 * 120.36995 * 179.97438 * 6 5 4 8 8 N 1.32466 * 119.26959 * 0.02562 * 6 5 4 9 9 C 1.32463 * 120.88451 * 0.02562 * 8 6 5 10 10 N 1.38399 * 119.18619 * 180.02562 * 9 8 6 11 11 C 1.46894 * 111.00031 * 304.27294 * 10 9 8 12 12 C 1.53238 * 109.34025 * 172.74712 * 11 10 9 13 13 N 1.47074 * 108.52300 * 53.83679 * 12 11 10 14 14 C 1.36932 * 120.88712 * 128.83467 * 13 12 11 15 15 H 1.08005 * 119.99963 * 333.48818 * 14 13 12 16 16 C 1.38809 * 120.00145 * 153.48812 * 14 13 12 17 17 N 1.31623 * 120.00086 * 159.44578 * 16 14 13 18 18 Si 1.86801 * 120.00089 * 339.44099 * 16 14 13 19 19 H 1.48500 * 109.47213 * 91.97793 * 18 16 14 20 20 H 1.48498 * 109.47338 * 211.97929 * 18 16 14 21 21 H 1.48505 * 109.46950 * 331.97709 * 18 16 14 22 22 C 1.47084 * 118.23353 * 308.80986 * 13 12 11 23 23 C 1.46905 * 110.99917 * 179.97438 * 10 9 8 24 24 N 1.32482 * 121.62667 * 359.97438 * 9 8 6 25 25 H 1.09004 * 109.47182 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47107 * 299.99733 * 1 2 3 27 27 H 1.09003 * 109.46965 * 59.99707 * 1 2 3 28 28 H 1.09003 * 109.47107 * 240.00267 * 2 1 3 29 29 H 1.08994 * 109.46978 * 120.00495 * 2 1 3 30 30 H 1.08004 * 120.74767 * 0.05405 * 5 4 3 31 31 H 1.09004 * 109.47581 * 90.00000 * 7 6 5 32 32 H 1.09000 * 109.47810 * 210.00031 * 7 6 5 33 33 H 1.09002 * 109.47346 * 330.00597 * 7 6 5 34 34 H 1.08998 * 109.49763 * 292.71402 * 11 10 9 35 35 H 1.09009 * 109.49205 * 52.78758 * 11 10 9 36 36 H 1.09003 * 109.62967 * 294.12024 * 12 11 10 37 37 H 1.09007 * 109.62639 * 173.54467 * 12 11 10 38 38 H 0.97004 * 120.00057 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.63129 * 291.47689 * 22 13 12 40 40 H 1.09002 * 109.79221 * 170.98662 * 22 13 12 41 41 H 1.08997 * 109.49529 * 307.21224 * 23 10 9 42 42 H 1.09003 * 109.48851 * 67.26766 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3498 1.5247 0.0005 5 6 3.8932 2.8089 0.0000 6 6 5.2686 2.9431 0.0001 7 6 5.9006 4.3110 -0.0010 8 7 6.0254 1.8559 0.0001 9 6 5.4808 0.6484 -0.0005 10 7 6.3048 -0.4636 0.0001 11 6 7.2396 -0.4267 -1.1324 12 6 8.2480 -1.5724 -0.9957 13 7 7.5054 -2.8327 -0.8433 14 6 7.7856 -3.9139 -1.6355 15 1 8.2100 -3.7680 -2.6179 16 6 7.5243 -5.1974 -1.1760 17 7 7.4006 -6.1901 -2.0314 18 14 7.3482 -5.5157 0.6562 19 1 5.9195 -5.3989 1.0439 20 1 7.8362 -6.8826 0.9703 21 1 8.1491 -4.5186 1.4110 22 6 6.4541 -2.9012 0.1831 23 6 5.5163 -1.7031 -0.0001 24 7 4.1669 0.4788 -0.0005 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.2536 3.6791 0.0001 31 1 6.0530 4.6418 1.0264 32 1 6.8610 4.2673 -0.5147 33 1 5.2452 5.0138 -0.5155 34 1 6.6862 -0.5385 -2.0648 35 1 7.7696 0.5259 -1.1357 36 1 8.8731 -1.4072 -0.1181 37 1 8.8712 -1.6202 -1.8888 38 1 7.2183 -7.0871 -1.7102 39 1 6.9067 -2.8638 1.1739 40 1 5.8904 -3.8275 0.0728 41 1 4.7964 -1.6764 0.8179 42 1 4.9865 -1.7970 -0.9481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105868720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:47 Heat of formation + Delta-G solvation = 37.480561 kcal Electronic energy + Delta-G solvation = -23955.084973 eV Core-core repulsion = 20550.421132 eV Total energy + Delta-G solvation = -3404.663841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.49841 -40.33563 -39.35096 -36.64425 -34.92246 -33.85581 -32.86449 -32.36942 -31.66774 -29.34642 -28.62975 -25.48639 -25.05250 -24.40901 -23.86783 -22.74029 -21.31875 -19.59499 -19.15640 -18.40362 -17.62786 -17.58139 -16.70651 -16.45462 -16.35449 -16.04176 -15.73729 -15.60854 -15.14540 -14.80004 -14.63682 -14.36650 -14.17514 -13.98443 -13.65554 -13.50276 -13.27808 -13.07757 -12.83360 -12.65517 -12.47285 -12.30776 -12.09869 -11.97668 -11.93711 -11.79557 -11.53768 -11.17000 -10.84084 -10.67798 -10.36445 -9.44953 -9.02926 -8.18881 -5.52296 -0.10376 0.13355 1.28675 1.41165 1.50329 1.74908 2.03690 2.39605 2.64437 2.95461 3.01198 3.26227 3.49860 3.77201 3.97525 4.01292 4.03021 4.07482 4.17404 4.26104 4.27580 4.30731 4.35253 4.38445 4.58568 4.70261 4.70797 4.77545 4.80838 4.87678 4.88276 4.89300 5.00248 5.13554 5.14252 5.33103 5.48059 5.70571 5.79892 5.87700 6.09510 6.26872 6.82620 7.08747 7.54886 7.96923 9.00596 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.004843 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.865586 B = 5780.530399 C = 7025.803005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 O -0.302 6.302 4 C 0.369 3.631 5 C -0.277 4.277 6 C 0.216 3.784 7 C -0.097 4.097 8 N -0.567 5.567 9 C 0.523 3.477 10 N -0.461 5.461 11 C 0.069 3.931 12 C 0.149 3.851 13 N -0.622 5.622 14 C -0.252 4.252 15 H 0.059 0.941 16 C -0.029 4.029 17 N -0.954 5.954 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.308 1.308 21 H -0.264 1.264 22 C 0.126 3.874 23 C 0.078 3.922 24 N -0.627 5.627 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.180 0.820 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.031 0.969 35 H 0.109 0.891 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.263 0.737 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.756 21.835 5.924 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.016 4.016 3 O -0.207 6.207 4 C 0.182 3.818 5 C -0.300 4.300 6 C 0.072 3.928 7 C -0.154 4.154 8 N -0.292 5.292 9 C 0.166 3.834 10 N -0.180 5.180 11 C -0.058 4.058 12 C 0.024 3.976 13 N -0.347 5.347 14 C -0.381 4.381 15 H 0.076 0.924 16 C -0.224 4.224 17 N -0.600 5.600 18 Si 0.770 3.230 19 H -0.199 1.199 20 H -0.236 1.236 21 H -0.188 1.188 22 C 0.000 4.000 23 C -0.051 4.051 24 N -0.365 5.365 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.198 0.802 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.049 0.951 35 H 0.128 0.872 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.150 21.028 6.302 24.185 hybrid contribution -0.919 -0.710 0.066 1.163 sum -11.069 20.318 6.367 23.998 Atomic orbital electron populations 1.21818 0.90143 1.04311 1.03794 1.22834 0.96858 0.79857 1.02012 1.86221 1.15783 1.32019 1.86679 1.20268 0.84341 0.90157 0.87009 1.21884 0.96740 0.96526 1.14899 1.22128 0.89274 0.95735 0.85695 1.20903 1.02072 0.87337 1.05109 1.67960 1.40939 0.97554 1.22720 1.20810 0.84465 0.89883 0.88193 1.58396 1.16881 1.00408 1.42363 1.22620 0.93601 1.01624 0.87923 1.21217 0.92473 0.83091 1.00807 1.44571 1.38274 1.11032 1.40840 1.18874 1.38620 0.84729 0.95846 0.92367 1.25825 1.00220 0.95197 1.01187 1.69955 1.53438 1.01262 1.35310 0.86004 0.78239 0.75951 0.82788 1.19879 1.23627 1.18816 1.21520 0.89943 0.96431 0.92092 1.22303 0.94507 0.86785 1.01522 1.67946 1.05632 1.35724 1.27183 0.88610 0.90868 0.91133 0.92661 0.92116 0.80238 0.87952 0.89724 0.87222 0.95058 0.87240 0.93624 0.90303 0.92809 0.94336 0.91763 0.89285 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 10.28 71.98 0.74 -1.42 16 2 C 0.06 1.33 6.06 71.98 0.44 1.77 16 3 O -0.30 -7.56 10.13 -88.15 -0.89 -8.45 16 4 C 0.37 10.28 7.53 84.85 0.64 10.92 16 5 C -0.28 -6.06 9.79 22.55 0.22 -5.84 16 6 C 0.22 4.85 6.81 42.45 0.29 5.14 16 7 C -0.10 -1.19 10.21 71.23 0.73 -0.46 16 8 N -0.57 -17.02 9.56 -186.27 -1.78 -18.80 16 9 C 0.52 17.84 7.17 261.51 1.88 19.71 16 10 N -0.46 -16.94 4.69 -707.91 -3.32 -20.26 16 11 C 0.07 2.45 5.49 86.38 0.47 2.92 16 12 C 0.15 5.90 6.69 86.35 0.58 6.48 16 13 N -0.62 -30.03 2.82 -698.12 -1.97 -32.00 16 14 C -0.25 -14.34 10.08 84.03 0.85 -13.49 16 15 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 16 C -0.03 -1.71 5.24 84.86 0.44 -1.26 16 17 N -0.95 -59.89 13.97 21.65 0.30 -59.59 16 18 Si 0.94 46.73 24.31 68.60 1.67 48.40 16 19 H -0.27 -12.70 6.58 99.48 0.65 -12.04 16 20 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 21 H -0.26 -12.72 6.61 99.48 0.66 -12.07 16 22 C 0.13 5.59 4.35 86.35 0.38 5.96 16 23 C 0.08 3.02 4.80 86.38 0.41 3.43 16 24 N -0.63 -20.59 7.60 -310.89 -2.36 -22.95 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.39 8.12 -2.39 -0.02 1.37 16 29 H 0.06 1.45 8.12 -2.39 -0.02 1.43 16 30 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 0.73 8.09 -2.39 -0.02 0.72 16 34 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 3.41 7.51 -2.38 -0.02 3.39 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 3.01 7.95 -2.38 -0.02 2.99 16 38 H 0.26 15.67 8.31 -92.71 -0.77 14.89 16 39 H 0.04 1.70 6.94 -2.39 -0.02 1.68 16 40 H 0.06 3.07 4.61 -2.39 -0.01 3.06 16 41 H 0.09 3.24 7.62 -2.39 -0.02 3.22 16 42 H 0.04 1.62 8.13 -2.39 -0.02 1.60 16 Total: -1.00 -70.72 336.39 0.61 -70.10 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.91 Total: 9.69 kcal Atomic # 6 Polarization: 25.80 SS G_CDS: 8.06 Total: 33.86 kcal Atomic # 7 Polarization: -144.47 SS G_CDS: -9.13 Total: -153.60 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.89 Total: -8.45 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.67 Total: 48.40 kcal Total: -70.72 0.61 -70.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105868720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.584 kcal (2) G-P(sol) polarization free energy of solvation -70.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds