Wall clock time and date at job start Tue Mar 31 2020 03:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 110.99730 * 2 1 4 4 C 1.50701 * 109.47234 * 75.76256 * 3 2 1 5 5 O 1.21289 * 120.00018 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99971 * 179.97438 * 4 3 2 7 7 C 1.37097 * 119.99920 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99916 * 0.02562 * 7 6 4 9 9 C 1.38952 * 119.99940 * 180.27714 * 7 6 4 10 10 N 1.31408 * 119.99942 * 359.72688 * 9 7 6 11 11 Si 1.86806 * 119.99842 * 179.72539 * 9 7 6 12 12 H 1.48503 * 109.47030 * 59.99910 * 11 9 7 13 13 H 1.48499 * 109.46984 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46980 * 300.00125 * 11 9 7 15 15 C 1.46898 * 111.00166 * 236.04804 * 2 1 3 16 16 H 1.08997 * 109.67907 * 311.96036 * 15 2 1 17 17 C 1.53360 * 109.68440 * 72.48245 * 15 2 1 18 18 C 1.53131 * 109.50595 * 169.63466 * 17 15 2 19 19 C 1.53366 * 109.53417 * 289.78075 * 18 17 15 20 20 C 1.50824 * 108.38318 * 49.94256 * 19 18 17 21 21 C 1.35744 * 124.11951 * 343.41181 * 20 19 18 22 22 C 1.39301 * 107.98864 * 179.87366 * 21 20 19 23 23 N 1.31070 * 108.07741 * 0.05577 * 22 21 20 24 24 N 1.34326 * 128.03317 * 163.36627 * 20 19 18 25 25 C 1.46498 * 126.09233 * 0.11829 * 24 20 19 26 26 H 1.09004 * 109.47840 * 60.00043 * 1 2 3 27 27 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47607 * 300.00157 * 1 2 3 29 29 H 1.09001 * 109.47488 * 315.76406 * 3 2 1 30 30 H 1.08999 * 109.47472 * 195.76388 * 3 2 1 31 31 H 0.97001 * 120.00233 * 0.02562 * 6 4 3 32 32 H 0.97003 * 119.99616 * 179.97438 * 10 9 7 33 33 H 1.09007 * 109.46617 * 289.68182 * 17 15 2 34 34 H 1.09006 * 109.46511 * 49.65100 * 17 15 2 35 35 H 1.09000 * 109.45751 * 169.75949 * 18 17 15 36 36 H 1.09002 * 109.43709 * 49.78794 * 18 17 15 37 37 H 1.08997 * 109.68554 * 290.21679 * 19 18 17 38 38 H 1.09002 * 109.70874 * 169.68318 * 19 18 17 39 39 H 1.08002 * 125.95703 * 180.02562 * 22 21 20 40 40 H 1.08994 * 109.47355 * 89.99324 * 25 24 20 41 41 H 1.09004 * 109.46724 * 209.99831 * 25 24 20 42 42 H 1.08999 * 109.46918 * 329.98837 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.8491 1.9657 1.3772 5 8 1.3554 1.3109 2.2709 6 7 2.2678 3.2243 1.6160 7 6 2.1353 3.7647 2.8690 8 1 1.6957 3.1817 3.6648 9 6 2.5617 5.0643 3.1138 10 7 3.0970 5.7735 2.1456 11 14 2.3741 5.8033 4.8192 12 1 3.1336 4.9858 5.7991 13 1 2.9011 7.1916 4.8178 14 1 0.9378 5.8199 5.1961 15 6 1.9954 -0.7659 -1.1376 16 1 1.4863 -1.7277 -1.1996 17 6 1.7748 0.0200 -2.4359 18 6 2.5460 -0.6501 -3.5766 19 6 4.0515 -0.4465 -3.3668 20 6 4.3924 -0.8423 -1.9519 21 6 3.4770 -0.9859 -0.9598 22 6 4.1537 -1.3593 0.1991 23 7 5.4313 -1.4370 -0.0830 24 7 5.6032 -1.1133 -1.4372 25 6 6.8763 -1.0774 -2.1611 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.4381 1.9746 -0.7169 30 1 3.0488 1.3564 -0.2792 31 1 2.6630 3.7478 0.9014 32 1 3.3943 6.6809 2.3164 33 1 0.7114 0.0349 -2.6752 34 1 2.1323 1.0417 -2.3073 35 1 2.2482 -0.2058 -4.5263 36 1 2.3219 -1.7168 -3.5883 37 1 4.3060 0.6012 -3.5263 38 1 4.6078 -1.0701 -4.0666 39 1 3.7040 -1.5507 1.1622 40 1 7.3069 -0.0787 -2.0897 41 1 7.5636 -1.8016 -1.7235 42 1 6.7058 -1.3256 -3.2086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135646004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:57 Heat of formation + Delta-G solvation = 49.372835 kcal Electronic energy + Delta-G solvation = -24105.245305 eV Core-core repulsion = 20701.097151 eV Total energy + Delta-G solvation = -3404.148154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47995 -38.67545 -37.24357 -34.93890 -33.74704 -33.18197 -31.12127 -29.47720 -29.19018 -27.85518 -26.55121 -24.92404 -24.05256 -22.30366 -21.45401 -20.39275 -19.18430 -18.32028 -17.65507 -16.76735 -16.14308 -15.67512 -14.93660 -14.71400 -14.53700 -14.43344 -14.04641 -13.79077 -13.69303 -13.53364 -13.29591 -12.91347 -12.78857 -12.72064 -12.19832 -12.02267 -11.79998 -11.53297 -11.41856 -11.13515 -11.10673 -10.99730 -10.71996 -10.63584 -10.38191 -10.32069 -10.12552 -9.38338 -9.08608 -8.34844 -8.09596 -7.86024 -7.67400 -6.32532 -3.72656 1.97645 2.60317 3.02985 3.26196 3.30646 3.35585 4.04200 4.11787 4.32119 4.49352 4.53053 4.72932 4.80454 5.01792 5.08054 5.14622 5.25761 5.28503 5.34436 5.38070 5.41430 5.49184 5.62018 5.66133 5.76146 5.78762 5.85760 5.95459 6.01401 6.07862 6.22539 6.27873 6.31714 6.43308 6.51155 6.90981 7.12649 7.42690 7.54756 7.63540 7.92605 8.16763 8.73286 9.28471 9.66279 10.19358 10.85630 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.004364 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.302273 B = 6415.094417 C = 7039.057719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.506 5.506 3 C 0.050 3.950 4 C 0.448 3.552 5 O -0.576 6.576 6 N -0.570 5.570 7 C -0.295 4.295 8 H 0.102 0.898 9 C 0.021 3.979 10 N -0.906 5.906 11 Si 0.929 3.071 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.165 3.835 16 H 0.086 0.914 17 C -0.158 4.158 18 C -0.106 4.106 19 C -0.054 4.054 20 C 0.079 3.921 21 C -0.224 4.224 22 C 0.086 3.914 23 N -0.308 5.308 24 N -0.374 5.374 25 C 0.103 3.897 26 H 0.017 0.983 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.390 0.610 32 H 0.270 0.730 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.186 0.814 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 -11.895 -15.981 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.228 5.228 3 C -0.081 4.081 4 C 0.233 3.767 5 O -0.459 6.459 6 N -0.207 5.207 7 C -0.425 4.425 8 H 0.119 0.881 9 C -0.180 4.180 10 N -0.548 5.548 11 Si 0.756 3.244 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.055 3.945 16 H 0.104 0.896 17 C -0.197 4.197 18 C -0.144 4.144 19 C -0.093 4.093 20 C -0.050 4.050 21 C -0.236 4.236 22 C -0.099 4.099 23 N -0.129 5.129 24 N -0.155 5.155 25 C -0.039 4.039 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.223 0.777 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.203 0.797 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.597 -12.624 -14.517 19.571 hybrid contribution -0.676 1.475 -0.639 1.744 sum 2.921 -11.148 -15.156 19.040 Atomic orbital electron populations 1.22401 0.86950 1.01390 1.01129 1.61642 1.07802 1.13002 1.40360 1.21821 1.00682 0.89127 0.96493 1.19849 0.84357 0.82836 0.89636 1.90496 1.48398 1.60849 1.46155 1.41864 1.54767 1.11937 1.12113 1.19637 1.37861 0.96760 0.88202 0.88060 1.25225 0.97109 0.96393 0.99306 1.69609 1.41790 1.10943 1.32408 0.85949 0.78715 0.77711 0.82011 1.19950 1.21080 1.19983 1.20081 0.90130 0.96636 0.87639 0.89638 1.22410 1.00435 1.00949 0.95919 1.21456 0.92959 1.01449 0.98564 1.20322 0.97577 1.01787 0.89622 1.20831 0.85732 1.01700 0.96753 1.19702 0.95642 1.15161 0.93078 1.23645 0.89786 0.96918 0.99590 1.77587 1.18958 1.24987 0.91366 1.48161 1.05604 1.53696 1.08059 1.21762 0.82929 1.03567 0.95607 0.96454 0.92024 0.89880 0.93504 0.89750 0.77702 0.92005 0.91362 0.91001 0.91149 0.91416 0.89910 0.90637 0.79667 0.90889 0.89502 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.01 60.06 0.54 1.00 16 2 N -0.51 -8.52 4.14 -237.42 -0.98 -9.50 16 3 C 0.05 0.94 4.00 -4.97 -0.02 0.92 16 4 C 0.45 10.95 7.55 -10.98 -0.08 10.87 16 5 O -0.58 -15.89 14.71 5.55 0.08 -15.81 16 6 N -0.57 -14.99 5.29 -10.96 -0.06 -15.04 16 7 C -0.29 -8.46 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 10 N -0.91 -25.34 13.05 55.50 0.72 -24.61 16 11 Si 0.93 21.65 29.55 -169.99 -5.02 16.62 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 C 0.16 2.23 2.54 -68.61 -0.17 2.06 16 16 H 0.09 1.08 7.99 -51.93 -0.41 0.67 16 17 C -0.16 -1.75 4.59 -26.48 -0.12 -1.87 16 18 C -0.11 -0.91 5.90 -26.47 -0.16 -1.06 16 19 C -0.05 -0.49 5.90 -27.63 -0.16 -0.65 16 20 C 0.08 1.02 6.73 -82.33 -0.55 0.46 16 21 C -0.22 -3.30 4.26 -105.05 -0.45 -3.75 16 22 C 0.09 1.43 11.84 -17.48 -0.21 1.22 16 23 N -0.31 -5.17 12.59 30.55 0.38 -4.78 16 24 N -0.37 -5.06 4.00 -63.88 -0.26 -5.32 16 25 C 0.10 0.90 11.32 59.85 0.68 1.58 16 26 H 0.02 0.23 7.09 -51.93 -0.37 -0.13 16 27 H 0.06 0.82 8.04 -51.93 -0.42 0.40 16 28 H 0.08 1.55 6.76 -51.93 -0.35 1.20 16 29 H 0.05 0.81 7.09 -51.93 -0.37 0.44 16 30 H 0.08 1.60 6.88 -51.93 -0.36 1.24 16 31 H 0.39 9.92 7.90 -40.82 -0.32 9.59 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.07 0.70 7.35 -51.93 -0.38 0.32 16 34 H 0.07 0.89 6.14 -51.93 -0.32 0.57 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.52 7.75 -51.93 -0.40 0.12 16 39 H 0.19 3.11 8.06 -52.49 -0.42 2.69 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.48 7.57 -51.93 -0.39 0.09 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -33.91 338.23 -7.12 -41.03 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.14 Total: 9.66 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.95 Total: 2.65 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.19 Total: -59.26 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.08 Total: -15.81 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.91 -7.12 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135646004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.407 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds