Wall clock time and date at job start Tue Mar 31 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 110.99730 * 2 1 4 4 C 1.50701 * 109.47234 * 75.76256 * 3 2 1 5 5 O 1.21289 * 120.00018 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99971 * 179.97438 * 4 3 2 7 7 C 1.37097 * 119.99920 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99916 * 0.02562 * 7 6 4 9 9 C 1.38952 * 119.99940 * 180.27714 * 7 6 4 10 10 N 1.31408 * 119.99942 * 359.72688 * 9 7 6 11 11 Si 1.86806 * 119.99842 * 179.72539 * 9 7 6 12 12 H 1.48503 * 109.47030 * 59.99910 * 11 9 7 13 13 H 1.48499 * 109.46984 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46980 * 300.00125 * 11 9 7 15 15 C 1.46898 * 111.00166 * 236.04804 * 2 1 3 16 16 H 1.08997 * 109.67907 * 311.96036 * 15 2 1 17 17 C 1.53360 * 109.68440 * 72.48245 * 15 2 1 18 18 C 1.53131 * 109.50595 * 169.63466 * 17 15 2 19 19 C 1.53366 * 109.53417 * 289.78075 * 18 17 15 20 20 C 1.50824 * 108.38318 * 49.94256 * 19 18 17 21 21 C 1.35744 * 124.11951 * 343.41181 * 20 19 18 22 22 C 1.39301 * 107.98864 * 179.87366 * 21 20 19 23 23 N 1.31070 * 108.07741 * 0.05577 * 22 21 20 24 24 N 1.34326 * 128.03317 * 163.36627 * 20 19 18 25 25 C 1.46498 * 126.09233 * 0.11829 * 24 20 19 26 26 H 1.09004 * 109.47840 * 60.00043 * 1 2 3 27 27 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47607 * 300.00157 * 1 2 3 29 29 H 1.09001 * 109.47488 * 315.76406 * 3 2 1 30 30 H 1.08999 * 109.47472 * 195.76388 * 3 2 1 31 31 H 0.97001 * 120.00233 * 0.02562 * 6 4 3 32 32 H 0.97003 * 119.99616 * 179.97438 * 10 9 7 33 33 H 1.09007 * 109.46617 * 289.68182 * 17 15 2 34 34 H 1.09006 * 109.46511 * 49.65100 * 17 15 2 35 35 H 1.09000 * 109.45751 * 169.75949 * 18 17 15 36 36 H 1.09002 * 109.43709 * 49.78794 * 18 17 15 37 37 H 1.08997 * 109.68554 * 290.21679 * 19 18 17 38 38 H 1.09002 * 109.70874 * 169.68318 * 19 18 17 39 39 H 1.08002 * 125.95703 * 180.02562 * 22 21 20 40 40 H 1.08994 * 109.47355 * 89.99324 * 25 24 20 41 41 H 1.09004 * 109.46724 * 209.99831 * 25 24 20 42 42 H 1.08999 * 109.46918 * 329.98837 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.8491 1.9657 1.3772 5 8 1.3554 1.3109 2.2709 6 7 2.2678 3.2243 1.6160 7 6 2.1353 3.7647 2.8690 8 1 1.6957 3.1817 3.6648 9 6 2.5617 5.0643 3.1138 10 7 3.0970 5.7735 2.1456 11 14 2.3741 5.8033 4.8192 12 1 3.1336 4.9858 5.7991 13 1 2.9011 7.1916 4.8178 14 1 0.9378 5.8199 5.1961 15 6 1.9954 -0.7659 -1.1376 16 1 1.4863 -1.7277 -1.1996 17 6 1.7748 0.0200 -2.4359 18 6 2.5460 -0.6501 -3.5766 19 6 4.0515 -0.4465 -3.3668 20 6 4.3924 -0.8423 -1.9519 21 6 3.4770 -0.9859 -0.9598 22 6 4.1537 -1.3593 0.1991 23 7 5.4313 -1.4370 -0.0830 24 7 5.6032 -1.1133 -1.4372 25 6 6.8763 -1.0774 -2.1611 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.4381 1.9746 -0.7169 30 1 3.0488 1.3564 -0.2792 31 1 2.6630 3.7478 0.9014 32 1 3.3943 6.6809 2.3164 33 1 0.7114 0.0349 -2.6752 34 1 2.1323 1.0417 -2.3073 35 1 2.2482 -0.2058 -4.5263 36 1 2.3219 -1.7168 -3.5883 37 1 4.3060 0.6012 -3.5263 38 1 4.6078 -1.0701 -4.0666 39 1 3.7040 -1.5507 1.1622 40 1 7.3069 -0.0787 -2.0897 41 1 7.5636 -1.8016 -1.7235 42 1 6.7058 -1.3256 -3.2086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135646004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:56 Heat of formation + Delta-G solvation = 24.616770 kcal Electronic energy + Delta-G solvation = -24106.318808 eV Core-core repulsion = 20701.097151 eV Total energy + Delta-G solvation = -3405.221657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.52738 -40.32520 -38.69767 -36.13775 -35.62716 -34.21268 -33.23797 -30.43743 -30.25050 -29.36844 -27.41853 -26.72791 -25.40300 -23.18701 -22.64355 -21.62803 -20.79301 -19.91570 -19.24880 -18.00359 -17.54241 -16.85603 -16.56903 -16.15110 -16.04269 -15.55171 -15.33189 -15.22917 -15.05096 -14.76184 -14.30933 -14.02745 -13.86436 -13.64830 -13.59834 -13.42892 -13.25250 -12.94168 -12.71775 -12.60289 -12.45058 -12.40387 -12.12518 -11.94395 -11.75520 -11.53727 -11.45029 -11.38698 -10.27596 -10.13609 -9.98135 -9.16053 -9.00444 -8.44507 -5.92987 0.94869 1.39701 1.40333 1.51681 1.70362 1.84844 2.10276 2.29845 2.88043 3.22246 3.47789 3.68341 3.72344 3.96161 4.04122 4.20621 4.26698 4.33116 4.36449 4.40991 4.47570 4.55352 4.58322 4.64014 4.68135 4.72962 4.76119 4.79384 4.96565 5.03219 5.17150 5.20478 5.29758 5.31836 5.41841 5.44623 5.73454 5.94810 6.17689 6.21453 6.38443 6.63861 6.80507 7.15686 7.59760 8.16724 8.73098 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.004364 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.302273 B = 6415.094417 C = 7039.057719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.529 5.529 3 C 0.074 3.926 4 C 0.443 3.557 5 O -0.612 6.612 6 N -0.579 5.579 7 C -0.331 4.331 8 H 0.078 0.922 9 C -0.014 4.014 10 N -0.924 5.924 11 Si 0.992 3.008 12 H -0.274 1.274 13 H -0.269 1.269 14 H -0.270 1.270 15 C 0.169 3.831 16 H 0.095 0.905 17 C -0.154 4.154 18 C -0.100 4.100 19 C -0.052 4.052 20 C 0.090 3.910 21 C -0.247 4.247 22 C 0.060 3.940 23 N -0.348 5.348 24 N -0.373 5.373 25 C 0.091 3.909 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.393 0.607 32 H 0.277 0.723 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.166 0.834 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 -11.759 -18.900 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.252 5.252 3 C -0.058 4.058 4 C 0.230 3.770 5 O -0.498 6.498 6 N -0.217 5.217 7 C -0.460 4.460 8 H 0.096 0.904 9 C -0.214 4.214 10 N -0.565 5.565 11 Si 0.816 3.184 12 H -0.200 1.200 13 H -0.194 1.194 14 H -0.195 1.195 15 C 0.060 3.940 16 H 0.113 0.887 17 C -0.193 4.193 18 C -0.138 4.138 19 C -0.091 4.091 20 C -0.040 4.040 21 C -0.259 4.259 22 C -0.124 4.124 23 N -0.170 5.170 24 N -0.155 5.155 25 C -0.049 4.049 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.226 0.774 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.184 0.816 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.859 -12.496 -17.465 21.819 hybrid contribution -0.695 1.367 0.227 1.550 sum 3.164 -11.129 -17.238 20.761 Atomic orbital electron populations 1.22321 0.86295 1.02540 1.00209 1.61523 1.08581 1.11852 1.43218 1.21514 1.01084 0.90496 0.92669 1.20922 0.82453 0.81975 0.91619 1.90463 1.49597 1.61571 1.48134 1.41948 1.55424 1.12767 1.11583 1.19615 1.39793 0.97686 0.88930 0.90445 1.26024 0.96096 0.96105 1.03133 1.69675 1.41544 1.11321 1.33967 0.85007 0.78801 0.77353 0.77270 1.19970 1.19372 1.19509 1.20143 0.89364 0.96800 0.87709 0.88689 1.22362 1.01721 0.99871 0.95344 1.21463 0.92053 1.01827 0.98468 1.20548 0.98383 1.02880 0.87298 1.21482 0.84879 0.99447 0.98226 1.19904 0.96695 1.16371 0.92929 1.23545 0.90523 0.98383 0.99923 1.77473 1.19049 1.26616 0.93852 1.48550 1.07383 1.52439 1.07081 1.22176 0.81292 1.04243 0.97146 0.94140 0.89876 0.93846 0.91440 0.89812 0.77387 0.91402 0.90123 0.92260 0.88421 0.90731 0.88938 0.87461 0.81649 0.90220 0.89189 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 9.01 127.69 1.15 2.19 16 2 N -0.53 -17.80 4.14 -905.07 -3.75 -21.55 16 3 C 0.07 2.79 4.00 85.56 0.34 3.13 16 4 C 0.44 22.47 7.55 87.66 0.66 23.14 16 5 O -0.61 -35.49 14.71 -3.06 -0.04 -35.54 16 6 N -0.58 -31.52 5.29 -306.98 -1.62 -33.14 16 7 C -0.33 -19.61 9.68 84.04 0.81 -18.79 16 8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 9 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 10 N -0.92 -51.66 13.05 21.66 0.28 -51.38 16 11 Si 0.99 44.53 29.55 68.60 2.03 46.56 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 15 C 0.17 4.34 2.54 44.33 0.11 4.45 16 16 H 0.10 2.24 7.99 -2.39 -0.02 2.22 16 17 C -0.15 -2.93 4.59 30.76 0.14 -2.79 16 18 C -0.10 -1.26 5.90 30.76 0.18 -1.08 16 19 C -0.05 -0.72 5.90 30.01 0.18 -0.54 16 20 C 0.09 2.13 6.73 41.64 0.28 2.41 16 21 C -0.25 -7.15 4.26 -20.14 -0.09 -7.24 16 22 C 0.06 2.10 11.84 85.06 1.01 3.10 16 23 N -0.35 -11.96 12.59 -57.27 -0.72 -12.68 16 24 N -0.37 -9.62 4.00 -356.02 -1.42 -11.04 16 25 C 0.09 1.37 11.32 127.77 1.45 2.82 16 26 H 0.04 1.03 7.09 -2.38 -0.02 1.02 16 27 H 0.08 2.14 8.04 -2.39 -0.02 2.12 16 28 H 0.04 1.67 6.76 -2.39 -0.02 1.65 16 29 H 0.07 2.27 7.09 -2.39 -0.02 2.25 16 30 H 0.08 3.19 6.88 -2.39 -0.02 3.17 16 31 H 0.39 20.48 7.90 -92.71 -0.73 19.74 16 32 H 0.28 14.48 8.31 -92.71 -0.77 13.70 16 33 H 0.08 1.35 7.35 -2.38 -0.02 1.33 16 34 H 0.06 1.29 6.14 -2.38 -0.01 1.28 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.89 8.11 -2.39 -0.02 0.87 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 0.85 7.75 -2.39 -0.02 0.84 16 39 H 0.17 6.15 8.06 -2.91 -0.02 6.13 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.12 0.89 7.57 -2.39 -0.02 0.87 16 Total: -1.00 -77.02 338.23 1.75 -75.27 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.30 Total: 33.02 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 6.70 Total: 10.48 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -7.23 Total: -129.79 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.04 Total: -35.54 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -77.02 1.75 -75.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135646004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.886 kcal (2) G-P(sol) polarization free energy of solvation -77.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds