Wall clock time and date at job start Tue Mar 31 2020 02:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47179 * 2 1 4 4 N 1.30452 * 125.98905 * 90.03152 * 3 2 1 5 5 N 1.39936 * 108.89766 * 179.97438 * 4 3 2 6 6 C 1.46500 * 125.75180 * 180.02562 * 5 4 3 7 7 C 1.34259 * 108.49397 * 359.97438 * 5 4 3 8 8 C 1.38052 * 107.41484 * 359.73498 * 7 5 4 9 9 C 1.47423 * 126.41332 * 180.25933 * 8 7 5 10 10 O 1.21609 * 119.99766 * 220.57153 * 9 8 7 11 11 N 1.34778 * 120.00339 * 40.56824 * 9 8 7 12 12 C 1.46961 * 120.59249 * 4.75643 * 11 9 8 13 13 C 1.53815 * 108.39646 * 124.75811 * 12 11 9 14 14 N 1.46960 * 108.58103 * 49.63940 * 13 12 11 15 15 C 1.36941 * 120.59514 * 124.62379 * 14 13 12 16 16 H 1.07998 * 119.99600 * 211.29256 * 15 14 13 17 17 C 1.38803 * 119.99940 * 31.28687 * 15 14 13 18 18 N 1.31618 * 120.00178 * 16.02375 * 17 15 14 19 19 Si 1.86797 * 120.00033 * 196.02171 * 17 15 14 20 20 H 1.48500 * 109.47185 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47529 * 120.00124 * 19 17 15 22 22 H 1.48504 * 109.47218 * 240.00167 * 19 17 15 23 23 C 1.46961 * 118.81152 * 304.64523 * 14 13 12 24 24 C 1.46965 * 120.59341 * 185.03623 * 11 9 8 25 25 H 1.09003 * 109.47392 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46884 * 300.00396 * 1 2 3 27 27 H 1.09005 * 109.47165 * 59.99736 * 1 2 3 28 28 H 1.09001 * 109.46694 * 240.00116 * 2 1 3 29 29 H 1.08992 * 109.47436 * 120.00353 * 2 1 3 30 30 H 1.08990 * 109.47342 * 89.97027 * 6 5 4 31 31 H 1.09000 * 109.46928 * 209.97506 * 6 5 4 32 32 H 1.09001 * 109.47051 * 329.96887 * 6 5 4 33 33 H 1.07996 * 126.29422 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.61382 * 244.54224 * 12 11 9 35 35 H 1.09006 * 109.61212 * 5.05483 * 12 11 9 36 36 H 1.09001 * 109.74278 * 289.84543 * 13 12 11 37 37 H 1.09004 * 109.53035 * 169.30307 * 13 12 11 38 38 H 0.97000 * 120.00147 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.61167 * 295.48482 * 23 14 13 40 40 H 1.09000 * 109.61148 * 174.96536 * 23 14 13 41 41 H 1.08994 * 109.61314 * 354.95182 * 24 11 9 42 42 H 1.09003 * 109.60787 * 115.46225 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2884 2.1433 1.0555 5 7 2.7346 3.4042 0.6443 6 6 3.1250 4.5046 1.5291 7 6 2.7457 3.4351 -0.6979 8 6 2.3157 2.2012 -1.1432 9 6 2.1744 1.7785 -2.5485 10 8 1.2165 1.1113 -2.8893 11 7 3.1067 2.1315 -3.4555 12 6 4.3208 2.8479 -3.0400 13 6 5.5442 2.0511 -3.5242 14 7 5.3620 1.7320 -4.9471 15 6 6.3089 2.0916 -5.8687 16 1 6.0145 2.3326 -6.8795 17 6 7.6470 2.1463 -5.5038 18 7 8.0512 1.5633 -4.3952 19 14 8.8742 3.0473 -6.5862 20 1 8.1718 3.6128 -7.7661 21 1 9.5037 4.1469 -5.8116 22 1 9.9226 2.0991 -7.0411 23 6 4.1453 1.0206 -5.3633 24 6 2.9245 1.8124 -4.8784 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.1903 4.4342 1.7483 31 1 2.9168 5.4559 1.0394 32 1 2.5580 4.4425 2.4580 33 1 3.0417 4.2701 -1.3157 34 1 4.3291 3.8427 -3.4855 35 1 4.3429 2.9308 -1.9534 36 1 5.6330 1.1283 -2.9508 37 1 6.4444 2.6522 -3.3964 38 1 8.9864 1.6012 -4.1404 39 1 4.1345 0.0245 -4.9209 40 1 4.1216 0.9413 -6.4502 41 1 2.0243 1.2114 -5.0062 42 1 2.8357 2.7352 -5.4518 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220996751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:32 Heat of formation + Delta-G solvation = 71.208754 kcal Electronic energy + Delta-G solvation = -24191.869756 eV Core-core repulsion = 20788.668478 eV Total energy + Delta-G solvation = -3403.201277 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.42096 -39.05938 -36.66419 -34.66523 -33.80694 -31.97237 -31.40771 -30.44548 -29.68627 -27.28099 -26.52705 -24.08171 -23.41789 -22.78170 -22.00025 -20.50269 -19.64553 -18.61464 -17.29463 -16.36515 -15.92063 -15.63962 -15.31417 -14.79913 -14.71216 -14.39260 -14.06127 -13.66828 -13.42394 -13.33419 -13.19520 -13.16344 -12.88319 -12.67889 -12.22440 -11.99788 -11.61043 -11.40476 -11.31386 -11.07001 -10.86314 -10.73452 -10.56540 -10.46704 -10.23064 -10.04708 -9.82553 -9.41667 -9.26207 -8.61185 -8.48751 -8.14565 -6.66433 -5.86379 -3.33632 1.65068 2.33715 2.37265 3.31182 3.39182 3.40168 3.42498 3.71123 4.33976 4.43678 4.65487 4.83038 4.94971 5.14066 5.19361 5.20567 5.29458 5.37299 5.49215 5.56497 5.65402 5.74452 5.82831 5.89398 6.00270 6.03788 6.10689 6.20985 6.24588 6.38825 6.41092 6.48414 6.57981 6.80271 6.84774 6.97895 7.24867 7.44397 7.64461 7.72960 8.00738 8.37365 8.69751 9.12045 9.73989 10.33386 11.21241 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019838 B = 0.004527 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.078981 B = 6183.592594 C = 6983.250122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C 0.129 3.871 4 N -0.303 5.303 5 N -0.367 5.367 6 C 0.099 3.901 7 C 0.095 3.905 8 C -0.272 4.272 9 C 0.588 3.412 10 O -0.554 6.554 11 N -0.593 5.593 12 C 0.076 3.924 13 C 0.162 3.838 14 N -0.591 5.591 15 C -0.256 4.256 16 H 0.067 0.933 17 C 0.006 3.994 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.131 3.869 24 C 0.098 3.902 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.183 0.817 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.024 0.976 37 H 0.093 0.907 38 H 0.254 0.746 39 H 0.024 0.976 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 5.323 10.150 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.038 4.038 4 N -0.124 5.124 5 N -0.145 5.145 6 C -0.042 4.042 7 C -0.055 4.055 8 C -0.286 4.286 9 C 0.376 3.624 10 O -0.433 6.433 11 N -0.325 5.325 12 C -0.049 4.049 13 C 0.035 3.965 14 N -0.314 5.314 15 C -0.386 4.386 16 H 0.084 0.916 17 C -0.193 4.193 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.201 1.201 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.004 3.996 24 C -0.026 4.026 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.200 0.800 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.042 0.958 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.593 5.141 11.388 16.381 hybrid contribution 1.050 0.721 -1.311 1.828 sum -9.543 5.862 10.077 15.066 Atomic orbital electron populations 1.21654 0.93866 1.01861 1.02428 1.19966 0.96643 0.88119 1.03331 1.22348 0.95756 0.96893 0.88825 1.77101 1.22109 0.90608 1.22623 1.48233 1.50084 1.11513 1.04691 1.21937 1.01806 0.85907 0.94541 1.23100 0.98102 0.99385 0.84923 1.20233 1.17978 0.95696 0.94739 1.17319 0.82042 0.79385 0.83609 1.90696 1.32138 1.40139 1.80355 1.47902 1.20073 1.56826 1.07722 1.22911 0.86508 0.96267 0.99167 1.21173 0.93989 0.96799 0.84520 1.43962 1.19159 1.64610 1.03636 1.19224 0.86101 1.39805 0.93467 0.91568 1.25142 0.97068 0.99298 0.97803 1.70030 1.15314 1.43991 1.25160 0.86227 0.81258 0.79283 0.80014 1.20139 1.21537 1.21632 1.21313 0.86490 0.93501 0.98253 1.22191 1.00315 1.00195 0.79897 0.92198 0.93169 0.91266 0.89516 0.90632 0.90222 0.89260 0.89153 0.79994 0.92083 0.90806 0.95789 0.88893 0.93568 0.95810 0.91579 0.89871 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.89 37.16 0.37 -1.41 16 2 C -0.04 -0.58 6.02 -27.89 -0.17 -0.75 16 3 C 0.13 2.04 6.51 -82.02 -0.53 1.50 16 4 N -0.30 -4.57 12.50 33.89 0.42 -4.14 16 5 N -0.37 -4.56 3.98 -67.60 -0.27 -4.83 16 6 C 0.10 0.72 11.44 59.85 0.68 1.41 16 7 C 0.10 1.25 9.08 -16.56 -0.15 1.10 16 8 C -0.27 -4.41 5.25 -105.06 -0.55 -4.96 16 9 C 0.59 10.85 7.33 -12.52 -0.09 10.75 16 10 O -0.55 -11.29 15.50 5.27 0.08 -11.21 16 11 N -0.59 -10.94 2.94 -173.48 -0.51 -11.45 16 12 C 0.08 1.36 5.72 -3.37 -0.02 1.34 16 13 C 0.16 3.70 5.50 -3.37 -0.02 3.68 16 14 N -0.59 -14.40 2.95 -171.77 -0.51 -14.91 16 15 C -0.26 -6.79 9.55 -15.06 -0.14 -6.93 16 16 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 17 C 0.01 0.16 4.91 -17.43 -0.09 0.08 16 18 N -0.90 -25.41 11.34 55.49 0.63 -24.78 16 19 Si 0.90 20.91 29.58 -169.99 -5.03 15.89 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 23 C 0.13 2.77 6.67 -3.60 -0.02 2.75 16 24 C 0.10 1.81 6.60 -3.59 -0.02 1.79 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.01 7.71 -51.93 -0.40 0.61 16 28 H 0.09 1.32 7.80 -51.93 -0.40 0.92 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.18 1.88 7.29 -52.49 -0.38 1.49 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.18 4.64 -51.93 -0.24 0.94 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 2.32 6.19 -51.93 -0.32 2.00 16 38 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 41 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -32.79 340.74 -7.10 -39.89 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.30 Total: 0.06 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -0.76 Total: 10.34 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.23 Total: -60.11 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.79 -7.10 -39.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220996751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.101 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds