Wall clock time and date at job start Tue Mar 31 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47179 * 2 1 4 4 N 1.30452 * 125.98905 * 90.03152 * 3 2 1 5 5 N 1.39936 * 108.89766 * 179.97438 * 4 3 2 6 6 C 1.46500 * 125.75180 * 180.02562 * 5 4 3 7 7 C 1.34259 * 108.49397 * 359.97438 * 5 4 3 8 8 C 1.38052 * 107.41484 * 359.73498 * 7 5 4 9 9 C 1.47423 * 126.41332 * 180.25933 * 8 7 5 10 10 O 1.21609 * 119.99766 * 220.57153 * 9 8 7 11 11 N 1.34778 * 120.00339 * 40.56824 * 9 8 7 12 12 C 1.46961 * 120.59249 * 4.75643 * 11 9 8 13 13 C 1.53815 * 108.39646 * 124.75811 * 12 11 9 14 14 N 1.46960 * 108.58103 * 49.63940 * 13 12 11 15 15 C 1.36941 * 120.59514 * 124.62379 * 14 13 12 16 16 H 1.07998 * 119.99600 * 211.29256 * 15 14 13 17 17 C 1.38803 * 119.99940 * 31.28687 * 15 14 13 18 18 N 1.31618 * 120.00178 * 16.02375 * 17 15 14 19 19 Si 1.86797 * 120.00033 * 196.02171 * 17 15 14 20 20 H 1.48500 * 109.47185 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47529 * 120.00124 * 19 17 15 22 22 H 1.48504 * 109.47218 * 240.00167 * 19 17 15 23 23 C 1.46961 * 118.81152 * 304.64523 * 14 13 12 24 24 C 1.46965 * 120.59341 * 185.03623 * 11 9 8 25 25 H 1.09003 * 109.47392 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46884 * 300.00396 * 1 2 3 27 27 H 1.09005 * 109.47165 * 59.99736 * 1 2 3 28 28 H 1.09001 * 109.46694 * 240.00116 * 2 1 3 29 29 H 1.08992 * 109.47436 * 120.00353 * 2 1 3 30 30 H 1.08990 * 109.47342 * 89.97027 * 6 5 4 31 31 H 1.09000 * 109.46928 * 209.97506 * 6 5 4 32 32 H 1.09001 * 109.47051 * 329.96887 * 6 5 4 33 33 H 1.07996 * 126.29422 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.61382 * 244.54224 * 12 11 9 35 35 H 1.09006 * 109.61212 * 5.05483 * 12 11 9 36 36 H 1.09001 * 109.74278 * 289.84543 * 13 12 11 37 37 H 1.09004 * 109.53035 * 169.30307 * 13 12 11 38 38 H 0.97000 * 120.00147 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.61167 * 295.48482 * 23 14 13 40 40 H 1.09000 * 109.61148 * 174.96536 * 23 14 13 41 41 H 1.08994 * 109.61314 * 354.95182 * 24 11 9 42 42 H 1.09003 * 109.60787 * 115.46225 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2884 2.1433 1.0555 5 7 2.7346 3.4042 0.6443 6 6 3.1250 4.5046 1.5291 7 6 2.7457 3.4351 -0.6979 8 6 2.3157 2.2012 -1.1432 9 6 2.1744 1.7785 -2.5485 10 8 1.2165 1.1113 -2.8893 11 7 3.1067 2.1315 -3.4555 12 6 4.3208 2.8479 -3.0400 13 6 5.5442 2.0511 -3.5242 14 7 5.3620 1.7320 -4.9471 15 6 6.3089 2.0916 -5.8687 16 1 6.0145 2.3326 -6.8795 17 6 7.6470 2.1463 -5.5038 18 7 8.0512 1.5633 -4.3952 19 14 8.8742 3.0473 -6.5862 20 1 8.1718 3.6128 -7.7661 21 1 9.5037 4.1469 -5.8116 22 1 9.9226 2.0991 -7.0411 23 6 4.1453 1.0206 -5.3633 24 6 2.9245 1.8124 -4.8784 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.1903 4.4342 1.7483 31 1 2.9168 5.4559 1.0394 32 1 2.5580 4.4425 2.4580 33 1 3.0417 4.2701 -1.3157 34 1 4.3291 3.8427 -3.4855 35 1 4.3429 2.9308 -1.9534 36 1 5.6330 1.1283 -2.9508 37 1 6.4444 2.6522 -3.3964 38 1 8.9864 1.6012 -4.1404 39 1 4.1345 0.0245 -4.9209 40 1 4.1216 0.9413 -6.4502 41 1 2.0243 1.2114 -5.0062 42 1 2.8357 2.7352 -5.4518 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220996751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:31 Heat of formation + Delta-G solvation = 50.224543 kcal Electronic energy + Delta-G solvation = -24192.779699 eV Core-core repulsion = 20788.668478 eV Total energy + Delta-G solvation = -3404.111221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.52023 -40.50904 -38.31055 -35.78525 -35.44422 -33.46711 -32.60916 -32.05739 -31.03632 -28.76152 -27.68206 -25.69225 -24.75507 -24.29758 -23.26607 -21.89702 -20.99810 -19.95947 -18.86736 -17.72142 -17.43557 -16.75419 -16.71860 -16.46818 -15.99308 -15.57789 -15.45423 -15.24116 -15.04580 -14.95167 -14.65516 -14.23218 -13.80492 -13.67107 -13.47326 -13.32984 -13.20778 -12.86353 -12.69088 -12.47933 -12.42828 -12.17532 -12.14612 -12.02211 -11.90183 -11.65191 -11.61507 -10.86779 -10.59728 -10.31652 -9.81397 -9.54012 -8.60496 -7.87646 -5.39441 0.59131 1.15077 1.46728 1.48712 1.51580 1.61858 2.00052 2.33834 2.53310 3.27331 3.35588 3.62118 3.69374 3.90868 4.01551 4.23295 4.27429 4.30381 4.41060 4.43953 4.45366 4.50850 4.58968 4.62768 4.66551 4.72435 4.73606 4.81803 4.86409 5.01875 5.09811 5.13976 5.23188 5.34702 5.46476 5.53969 5.64665 5.68726 5.92407 6.37842 6.50746 6.61023 7.12134 7.26961 7.78905 8.35063 9.17623 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019838 B = 0.004527 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.078981 B = 6183.592594 C = 6983.250122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.043 4.043 3 C 0.115 3.885 4 N -0.321 5.321 5 N -0.358 5.358 6 C 0.086 3.914 7 C 0.112 3.888 8 C -0.310 4.310 9 C 0.590 3.410 10 O -0.580 6.580 11 N -0.599 5.599 12 C 0.096 3.904 13 C 0.168 3.832 14 N -0.607 5.607 15 C -0.265 4.265 16 H 0.070 0.930 17 C -0.043 4.043 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.296 1.296 23 C 0.131 3.869 24 C 0.109 3.891 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.216 0.784 34 H 0.081 0.919 35 H 0.096 0.904 36 H -0.011 1.011 37 H 0.070 0.930 38 H 0.251 0.749 39 H 0.003 0.997 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.752 7.570 10.657 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.082 4.082 3 C -0.052 4.052 4 N -0.143 5.143 5 N -0.136 5.136 6 C -0.052 4.052 7 C -0.040 4.040 8 C -0.325 4.325 9 C 0.380 3.620 10 O -0.461 6.461 11 N -0.330 5.330 12 C -0.028 4.028 13 C 0.042 3.958 14 N -0.330 5.330 15 C -0.395 4.395 16 H 0.088 0.912 17 C -0.239 4.239 18 N -0.581 5.581 19 Si 0.797 3.203 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.224 1.224 23 C 0.005 3.995 24 C -0.015 4.015 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.141 0.859 32 H 0.117 0.883 33 H 0.232 0.768 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.007 0.993 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.021 0.979 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.016 7.402 11.920 17.839 hybrid contribution 1.173 0.004 -1.413 1.836 sum -9.843 7.406 10.507 16.191 Atomic orbital electron populations 1.21566 0.92890 1.02799 1.01567 1.19988 0.97476 0.87816 1.02958 1.22546 0.96084 0.97540 0.89009 1.77045 1.22764 0.91862 1.22614 1.48674 1.48243 1.11487 1.05175 1.22421 1.02699 0.85520 0.94601 1.23489 0.96061 0.98948 0.85490 1.20190 1.21175 0.97590 0.93536 1.17625 0.81430 0.78559 0.84391 1.90672 1.33182 1.41260 1.80962 1.47948 1.20222 1.57109 1.07720 1.22676 0.83884 0.95801 1.00448 1.20995 0.95576 0.95512 0.83733 1.44228 1.19681 1.65203 1.03929 1.19552 0.86776 1.39191 0.94020 0.91245 1.25876 0.98708 1.00185 0.99121 1.70184 1.15378 1.45560 1.26948 0.85196 0.78674 0.77797 0.78654 1.18922 1.21274 1.22356 1.21382 0.86628 0.92770 0.98740 1.22020 0.98724 1.00439 0.80329 0.90401 0.92400 0.93531 0.91503 0.89260 0.88965 0.85945 0.88280 0.76790 0.90116 0.88607 0.99268 0.91136 0.93960 0.97855 0.90755 0.89494 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.89 71.98 0.71 -2.56 16 2 C -0.04 -1.22 6.02 29.85 0.18 -1.04 16 3 C 0.11 3.56 6.51 43.51 0.28 3.84 16 4 N -0.32 -9.18 12.50 -46.68 -0.58 -9.77 16 5 N -0.36 -7.90 3.98 -367.79 -1.46 -9.36 16 6 C 0.09 0.94 11.44 127.77 1.46 2.40 16 7 C 0.11 2.63 9.08 84.28 0.77 3.40 16 8 C -0.31 -9.72 5.25 -20.15 -0.11 -9.83 16 9 C 0.59 21.47 7.33 86.66 0.64 22.11 16 10 O -0.58 -23.79 15.50 -4.06 -0.06 -23.86 16 11 N -0.60 -21.49 2.94 -821.01 -2.41 -23.91 16 12 C 0.10 3.29 5.72 86.57 0.50 3.79 16 13 C 0.17 7.78 5.50 86.57 0.48 8.25 16 14 N -0.61 -29.75 2.95 -697.34 -2.06 -31.81 16 15 C -0.27 -14.02 9.55 84.03 0.80 -13.22 16 16 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 17 C -0.04 -2.30 4.91 84.86 0.42 -1.89 16 18 N -0.94 -53.67 11.34 21.65 0.25 -53.43 16 19 Si 0.97 42.88 29.58 68.60 2.03 44.91 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 21 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.30 -13.36 7.11 99.48 0.71 -12.66 16 23 C 0.13 5.57 6.67 86.42 0.58 6.14 16 24 C 0.11 3.93 6.60 86.42 0.57 4.50 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.37 7.71 -2.38 -0.02 1.36 16 28 H 0.07 2.12 7.80 -2.39 -0.02 2.10 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.22 3.48 7.29 -2.91 -0.02 3.46 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.10 2.87 4.64 -2.38 -0.01 2.86 16 36 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H 0.07 3.57 6.19 -2.38 -0.01 3.56 16 38 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 39 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.07 2.97 7.93 -2.39 -0.02 2.95 16 41 H 0.09 3.09 6.99 -2.39 -0.02 3.07 16 42 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -72.10 340.74 3.98 -68.12 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.01 Total: 13.19 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 7.27 Total: 25.90 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -6.27 Total: -128.27 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.06 Total: -23.86 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -72.10 3.98 -68.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220996751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.348 kcal (2) G-P(sol) polarization free energy of solvation -72.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds