Wall clock time and date at job start Tue Mar 31 2020 03:04:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53001 * 109.46912 * 2 1
4 4 N 1.46495 * 109.47440 * 239.99664 * 2 1 3
5 5 N 1.28448 * 125.19188 * 55.14695 * 4 2 1
6 6 C 1.30859 * 110.92895 * 179.97438 * 5 4 2
7 7 C 1.39672 * 107.86123 * 0.02562 * 6 5 4
8 8 C 1.36597 * 125.19112 * 234.84640 * 4 2 1
9 9 C 1.47163 * 126.88333 * 0.02562 * 8 4 2
10 10 O 1.21623 * 120.00340 * 20.69144 * 9 8 4
11 11 N 1.34782 * 120.00077 * 200.69144 * 9 8 4
12 12 C 1.46970 * 120.58997 * 6.38943 * 11 9 8
13 13 C 1.53808 * 108.39529 * 124.76194 * 12 11 9
14 14 N 1.46964 * 108.58555 * 49.63523 * 13 12 11
15 15 C 1.36930 * 120.59883 * 124.62490 * 14 13 12
16 16 H 1.08002 * 120.00051 * 211.11301 * 15 14 13
17 17 C 1.38820 * 120.00043 * 31.10569 * 15 14 13
18 18 N 1.31615 * 119.99575 * 10.00074 * 17 15 14
19 19 Si 1.86792 * 120.00067 * 189.99381 * 17 15 14
20 20 H 1.48499 * 109.47515 * 60.00550 * 19 17 15
21 21 H 1.48504 * 109.47148 * 180.02562 * 19 17 15
22 22 H 1.48502 * 109.47196 * 300.00292 * 19 17 15
23 23 C 1.46972 * 118.80990 * 304.65142 * 14 13 12
24 24 C 1.46966 * 120.59573 * 186.67054 * 11 9 8
25 25 H 1.08994 * 109.47764 * 300.00340 * 1 2 3
26 26 H 1.09004 * 109.46864 * 60.00718 * 1 2 3
27 27 H 1.08999 * 109.47316 * 179.97438 * 1 2 3
28 28 H 1.09009 * 109.46593 * 119.99951 * 2 1 3
29 29 H 1.08999 * 109.47106 * 59.99759 * 3 2 1
30 30 H 1.08998 * 109.46619 * 179.97438 * 3 2 1
31 31 H 1.08994 * 109.46967 * 299.99392 * 3 2 1
32 32 H 1.07996 * 126.07022 * 180.02562 * 6 5 4
33 33 H 1.08007 * 127.31659 * 179.97438 * 7 6 5
34 34 H 1.09004 * 109.60842 * 244.54074 * 12 11 9
35 35 H 1.08991 * 109.61267 * 5.05385 * 12 11 9
36 36 H 1.09002 * 109.74306 * 289.84304 * 13 12 11
37 37 H 1.09005 * 109.53321 * 169.30243 * 13 12 11
38 38 H 0.96996 * 120.00114 * 179.97438 * 18 17 15
39 39 H 1.09009 * 109.60431 * 295.47934 * 23 14 13
40 40 H 1.08993 * 109.75282 * 175.05285 * 23 14 13
41 41 H 1.08994 * 109.60567 * 354.94584 * 24 11 9
42 42 H 1.08997 * 109.61023 * 115.45908 * 24 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 2.0184 -0.6906 -1.1961
5 7 1.6996 -0.3937 -2.4044
6 6 2.2966 -1.1896 -3.2544
7 6 3.0767 -2.0889 -2.5240
8 6 2.8868 -1.7450 -1.1968
9 6 3.4955 -2.3888 -0.0218
10 8 2.9828 -2.2638 1.0740
11 7 4.6211 -3.1171 -0.1599
12 6 5.3290 -3.1630 -1.4470
13 6 6.7879 -2.7351 -1.2142
14 7 7.3261 -3.5023 -0.0821
15 6 8.4692 -4.2429 -0.2226
16 1 8.6014 -5.1467 0.3537
17 6 9.4582 -3.8322 -1.1059
18 7 9.3922 -2.6399 -1.6595
19 14 10.8826 -4.9714 -1.5087
20 1 10.3598 -6.2233 -2.1126
21 1 11.7958 -4.3017 -2.4694
22 1 11.6251 -5.2948 -0.2640
23 6 6.6150 -3.4609 1.2035
24 6 5.1593 -3.8844 0.9722
25 1 -0.3634 0.5138 0.8899
26 1 -0.3633 0.5137 -0.8901
27 1 -0.3634 -1.0276 -0.0005
28 1 1.8933 -0.5139 0.8901
29 1 1.6766 1.9563 0.8900
30 1 3.1299 1.4425 0.0005
31 1 1.6767 1.9563 -0.8900
32 1 2.2027 -1.1570 -4.3298
33 1 3.6992 -2.8814 -2.9125
34 1 5.3016 -4.1780 -1.8436
35 1 4.8536 -2.4798 -2.1506
36 1 6.8272 -1.6700 -0.9859
37 1 7.3756 -2.9419 -2.1086
38 1 10.0834 -2.3527 -2.2764
39 1 6.6420 -2.4473 1.6039
40 1 7.0876 -4.1452 1.9080
41 1 4.5716 -3.6775 1.8666
42 1 5.1200 -4.9494 0.7440
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000268886215.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:04:03
Heat of formation + Delta-G solvation = 88.209632 kcal
Electronic energy + Delta-G solvation = -24353.937265 eV
Core-core repulsion = 20951.473201 eV
Total energy + Delta-G solvation = -3402.464064 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-42.51454 -39.38790 -36.90736 -35.73097 -33.96344 -31.95469 -30.66792 -30.33939
-29.72947 -27.45279 -27.09360 -24.30188 -23.28934 -22.87071 -22.32883 -21.00295
-19.81588 -18.74712 -17.40068 -16.46288 -16.02087 -15.83033 -15.40864 -15.04013
-14.78570 -14.49064 -14.27038 -13.78701 -13.54975 -13.37691 -13.15638 -13.06074
-12.91394 -12.47216 -12.37663 -12.27413 -11.67147 -11.51730 -11.29605 -11.23590
-10.88413 -10.76406 -10.59293 -10.50284 -10.24833 -9.98935 -9.90369 -9.61776
-9.09204 -8.80084 -8.60061 -8.32554 -6.70129 -5.87076 -3.37493 1.45659
2.41527 2.73106 3.31235 3.34014 3.38838 3.39244 3.45131 4.40923
4.44102 4.63064 4.77193 4.91156 5.10684 5.23877 5.29851 5.32162
5.37170 5.46223 5.56131 5.60461 5.71348 5.79013 5.80787 5.84150
5.90875 5.98065 6.02576 6.11114 6.14205 6.34043 6.39362 6.59719
6.74250 6.86391 6.86830 7.19734 7.48664 7.67526 7.76951 8.16759
8.35656 8.37331 9.10665 9.71006 10.29126 11.19900
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.026413 B = 0.004165 C = 0.003915
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1059.815723 B = 6721.555975 C = 7150.963248
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.130 3.870
3 C -0.161 4.161
4 N -0.252 5.252
5 N -0.281 5.281
6 C -0.008 4.008
7 C -0.200 4.200
8 C -0.026 4.026
9 C 0.582 3.418
10 O -0.561 6.561
11 N -0.575 5.575
12 C 0.047 3.953
13 C 0.159 3.841
14 N -0.592 5.592
15 C -0.257 4.257
16 H 0.066 0.934
17 C 0.006 3.994
18 N -0.905 5.905
19 Si 0.908 3.092
20 H -0.282 1.282
21 H -0.290 1.290
22 H -0.282 1.282
23 C 0.132 3.868
24 C 0.097 3.903
25 H 0.077 0.923
26 H 0.069 0.931
27 H 0.061 0.939
28 H 0.131 0.869
29 H 0.078 0.922
30 H 0.062 0.938
31 H 0.069 0.931
32 H 0.184 0.816
33 H 0.174 0.826
34 H 0.067 0.933
35 H 0.102 0.898
36 H 0.022 0.978
37 H 0.106 0.894
38 H 0.256 0.744
39 H 0.024 0.976
40 H 0.068 0.932
41 H 0.084 0.916
42 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.470 3.432 -0.406 14.877
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.030 3.970
3 C -0.218 4.218
4 N -0.041 5.041
5 N -0.113 5.113
6 C -0.183 4.183
7 C -0.228 4.228
8 C -0.155 4.155
9 C 0.369 3.631
10 O -0.442 6.442
11 N -0.305 5.305
12 C -0.076 4.076
13 C 0.032 3.968
14 N -0.315 5.315
15 C -0.387 4.387
16 H 0.084 0.916
17 C -0.193 4.193
18 N -0.549 5.549
19 Si 0.737 3.263
20 H -0.209 1.209
21 H -0.215 1.215
22 H -0.208 1.208
23 C 0.005 3.995
24 C -0.027 4.027
25 H 0.095 0.905
26 H 0.088 0.912
27 H 0.080 0.920
28 H 0.149 0.851
29 H 0.097 0.903
30 H 0.081 0.919
31 H 0.088 0.912
32 H 0.201 0.799
33 H 0.191 0.809
34 H 0.085 0.915
35 H 0.119 0.881
36 H 0.040 0.960
37 H 0.124 0.876
38 H 0.067 0.933
39 H 0.042 0.958
40 H 0.086 0.914
41 H 0.102 0.898
42 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -15.348 4.541 0.261 16.008
hybrid contribution 1.460 -1.230 -0.454 1.962
sum -13.888 3.311 -0.192 14.279
Atomic orbital electron populations
1.22057 0.92822 1.03061 1.03308 1.21982 0.96052 0.94219 0.84777
1.22145 1.02172 0.94167 1.03363 1.45914 1.30651 1.22064 1.05477
1.73059 1.23348 1.25051 0.89861 1.23567 0.99316 0.95638 0.99826
1.22659 1.04769 1.04469 0.90895 1.21463 1.01306 0.96592 0.96089
1.16990 0.80724 0.79134 0.86213 1.90675 1.63643 1.63188 1.26706
1.47771 1.22877 1.45915 1.13980 1.23678 0.97320 1.02353 0.84223
1.21324 0.87881 0.93490 0.94069 1.43968 1.26838 1.55860 1.04786
1.19171 0.93590 1.02296 1.23600 0.91595 1.25178 0.97381 0.95755
1.00977 1.69917 1.34896 1.17359 1.32773 0.86295 0.81980 0.80006
0.77990 1.20872 1.21537 1.20826 1.21297 0.89685 0.98652 0.89911
1.22302 0.97132 0.94704 0.88562 0.90461 0.91172 0.92001 0.85122
0.90344 0.91857 0.91245 0.79869 0.80905 0.91492 0.88061 0.95965
0.87642 0.93340 0.95837 0.91367 0.89809 0.91527
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.62 9.31 37.16 0.35 -1.28 16
2 C 0.13 1.68 3.55 -67.93 -0.24 1.44 16
3 C -0.16 -1.79 9.44 37.16 0.35 -1.44 16
4 N -0.25 -3.81 3.09 -50.69 -0.16 -3.97 16
5 N -0.28 -4.10 11.53 30.59 0.35 -3.74 16
6 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16
7 C -0.20 -2.82 8.71 -38.98 -0.34 -3.16 16
8 C -0.03 -0.42 6.61 -82.06 -0.54 -0.97 16
9 C 0.58 10.55 7.59 -12.64 -0.10 10.46 16
10 O -0.56 -10.92 14.08 5.26 0.07 -10.85 16
11 N -0.58 -10.48 2.94 -173.58 -0.51 -10.99 16
12 C 0.05 0.85 5.49 -3.37 -0.02 0.83 16
13 C 0.16 3.59 5.48 -3.37 -0.02 3.57 16
14 N -0.59 -14.25 2.96 -171.76 -0.51 -14.76 16
15 C -0.26 -6.73 9.59 -15.06 -0.14 -6.88 16
16 H 0.07 1.69 7.85 -52.49 -0.41 1.27 16
17 C 0.01 0.16 5.07 -17.43 -0.09 0.07 16
18 N -0.91 -25.13 10.95 55.49 0.61 -24.53 16
19 Si 0.91 20.84 29.56 -169.99 -5.03 15.81 16
20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16
21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
23 C 0.13 2.72 6.67 -3.60 -0.02 2.69 16
24 C 0.10 1.74 6.60 -3.60 -0.02 1.72 16
25 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16
26 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16
27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
28 H 0.13 1.90 5.56 -51.92 -0.29 1.62 16
29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
32 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16
33 H 0.17 2.17 5.79 -52.48 -0.30 1.87 16
34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
35 H 0.10 1.62 3.52 -51.93 -0.18 1.44 16
36 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16
37 H 0.11 2.62 5.96 -51.93 -0.31 2.31 16
38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16
39 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16
40 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16
41 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16
42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
LS Contribution 333.94 15.07 5.03 5.03
Total: -1.00 -30.51 333.94 -7.24 -37.75
By element:
Atomic # 1 Polarization: 9.54 SS G_CDS: -6.05 Total: 3.49 kcal
Atomic # 6 Polarization: 7.80 SS G_CDS: -1.05 Total: 6.75 kcal
Atomic # 7 Polarization: -57.77 SS G_CDS: -0.22 Total: -57.98 kcal
Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.85 kcal
Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -30.51 -7.24 -37.75 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000268886215.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.960 kcal
(2) G-P(sol) polarization free energy of solvation -30.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.450 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.210 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds