Wall clock time and date at job start Tue Mar 31 2020 03:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46858 * 2 1 4 4 N 1.46503 * 109.46919 * 119.99818 * 2 1 3 5 5 C 1.35846 * 126.13515 * 299.99675 * 4 2 1 6 6 N 1.30171 * 109.00072 * 179.72151 * 5 4 2 7 7 C 1.35765 * 108.86641 * 0.45261 * 6 5 4 8 8 C 1.47325 * 126.23505 * 179.81963 * 7 6 5 9 9 O 1.21620 * 119.99669 * 186.55267 * 8 7 6 10 10 N 1.34780 * 119.99725 * 6.54826 * 8 7 6 11 11 C 1.46957 * 120.59754 * 6.83029 * 10 8 7 12 12 C 1.53822 * 108.39710 * 124.75746 * 11 10 8 13 13 N 1.46961 * 108.57288 * 49.64000 * 12 11 10 14 14 C 1.36943 * 120.58895 * 124.67189 * 13 12 11 15 15 H 1.08006 * 119.99575 * 223.27419 * 14 13 12 16 16 C 1.38804 * 120.00180 * 43.27951 * 14 13 12 17 17 N 1.31618 * 120.00411 * 9.44012 * 16 14 13 18 18 Si 1.86802 * 119.99970 * 189.43870 * 16 14 13 19 19 H 1.48504 * 109.47083 * 89.99974 * 18 16 14 20 20 H 1.48500 * 109.47238 * 209.99668 * 18 16 14 21 21 H 1.48499 * 109.47055 * 329.99988 * 18 16 14 22 22 C 1.46961 * 118.81749 * 304.64378 * 13 12 11 23 23 C 1.46963 * 120.58787 * 187.11316 * 10 8 7 24 24 C 1.35376 * 126.12982 * 120.00125 * 4 2 1 25 25 H 1.08997 * 109.47420 * 300.00146 * 1 2 3 26 26 H 1.09005 * 109.46922 * 60.00058 * 1 2 3 27 27 H 1.08998 * 109.47144 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47028 * 240.00225 * 2 1 3 29 29 H 1.09000 * 109.47610 * 60.00394 * 3 2 1 30 30 H 1.09012 * 109.46944 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47357 * 299.99448 * 3 2 1 32 32 H 1.07995 * 125.50066 * 0.02562 * 5 4 2 33 33 H 1.08996 * 109.61630 * 244.54410 * 11 10 8 34 34 H 1.09003 * 109.60878 * 5.05612 * 11 10 8 35 35 H 1.09000 * 109.74064 * 289.84986 * 12 11 10 36 36 H 1.09003 * 109.53054 * 169.30748 * 12 11 10 37 37 H 0.97002 * 120.00393 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.61071 * 295.49075 * 22 13 12 39 39 H 1.08994 * 109.75669 * 175.05617 * 22 13 12 40 40 H 1.09001 * 109.61519 * 354.95143 * 23 10 8 41 41 H 1.09007 * 109.60831 * 115.45905 * 23 10 8 42 42 H 1.07999 * 126.57031 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7681 -0.3367 2.4837 6 7 2.3586 -1.1822 3.2780 7 6 3.0169 -2.1028 2.5281 8 6 3.8150 -3.2315 3.0377 9 8 4.4560 -3.9199 2.2668 10 7 3.8347 -3.5009 4.3582 11 6 2.9523 -2.7757 5.2828 12 6 2.1215 -3.8047 6.0686 13 7 3.0304 -4.8246 6.6102 14 6 3.0505 -5.0984 7.9518 15 1 3.9933 -5.2277 8.4625 16 6 1.8591 -5.2099 8.6553 17 7 0.7131 -5.2385 8.0086 18 14 1.8822 -5.3195 10.5200 19 1 1.8067 -3.9533 11.0971 20 1 0.7187 -6.1175 10.9834 21 1 3.1394 -5.9748 10.9617 22 6 3.9170 -5.5459 5.6863 23 6 4.7435 -4.5210 4.8998 24 6 2.7998 -1.7958 1.2167 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.1713 0.5068 2.7976 33 1 3.5529 -2.1830 5.9727 34 1 2.2880 -2.1220 4.7176 35 1 1.3962 -4.2760 5.4053 36 1 1.6024 -3.3055 6.8868 37 1 -0.1195 -5.3161 8.5002 38 1 3.3195 -6.1412 4.9958 39 1 4.5837 -6.1987 6.2496 40 1 5.2627 -5.0201 4.0815 41 1 5.4689 -4.0496 5.5630 42 1 3.1785 -2.3321 0.3592 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281188310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:32 Heat of formation + Delta-G solvation = 62.833007 kcal Electronic energy + Delta-G solvation = -23781.125333 eV Core-core repulsion = 20377.560856 eV Total energy + Delta-G solvation = -3403.564477 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.27862 -39.06763 -36.51096 -36.24513 -33.61841 -31.60182 -30.92153 -30.07427 -29.35272 -27.82556 -26.73278 -24.04307 -23.48622 -22.65378 -22.10211 -20.55329 -20.03201 -18.54029 -17.36331 -16.62562 -15.68194 -15.65985 -15.57904 -14.75139 -14.63559 -14.43009 -14.18555 -13.94967 -13.51008 -13.39488 -13.18000 -13.12777 -12.95520 -12.77756 -12.60951 -12.14749 -11.88466 -11.76871 -11.39669 -11.27656 -10.79041 -10.59181 -10.36498 -10.26686 -10.07955 -9.85622 -9.69472 -9.66788 -8.94195 -8.59542 -8.41878 -7.94625 -6.33926 -5.72372 -3.35248 1.73332 2.47280 2.53766 3.39839 3.46207 3.48132 3.70756 3.93230 4.07776 4.38738 4.46716 4.50407 4.55350 4.64196 4.99119 5.10493 5.18284 5.21044 5.27499 5.44296 5.48046 5.54074 5.61979 5.62712 6.04725 6.08079 6.12336 6.29855 6.33683 6.41717 6.58466 6.70980 6.82223 6.96691 7.04009 7.31969 7.49365 7.58026 7.85644 7.87562 8.20877 8.60711 8.78975 9.28280 9.84819 10.53607 11.32120 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.003781 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.216600 B = 7404.535625 C = 8175.643728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 C -0.164 4.164 4 N -0.454 5.454 5 C 0.182 3.818 6 N -0.451 5.451 7 C -0.046 4.046 8 C 0.592 3.408 9 O -0.568 6.568 10 N -0.579 5.579 11 C 0.054 3.946 12 C 0.166 3.834 13 N -0.590 5.590 14 C -0.264 4.264 15 H 0.059 0.941 16 C 0.017 3.983 17 N -0.895 5.895 18 Si 0.902 3.098 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.277 1.277 22 C 0.134 3.866 23 C 0.094 3.906 24 C 0.026 3.974 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.206 0.794 33 H 0.052 0.948 34 H 0.132 0.868 35 H 0.021 0.979 36 H 0.077 0.923 37 H 0.254 0.746 38 H 0.021 0.979 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 14.225 -17.208 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.221 4.221 4 N -0.137 5.137 5 C -0.100 4.100 6 N -0.170 5.170 7 C -0.175 4.175 8 C 0.380 3.620 9 O -0.449 6.449 10 N -0.308 5.308 11 C -0.069 4.069 12 C 0.040 3.960 13 N -0.313 5.313 14 C -0.394 4.394 15 H 0.076 0.924 16 C -0.183 4.183 17 N -0.537 5.537 18 Si 0.731 3.269 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.202 1.202 22 C 0.007 3.993 23 C -0.030 4.030 24 C -0.112 4.112 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.223 0.777 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.266 13.901 -16.743 21.763 hybrid contribution -0.226 -0.030 0.269 0.353 sum -0.492 13.871 -16.474 21.541 Atomic orbital electron populations 1.22193 0.92883 1.03613 1.03540 1.21538 0.95736 0.94105 0.86323 1.22188 1.02332 0.94077 1.03537 1.45612 1.37967 1.22047 1.08071 1.25205 1.04111 1.01948 0.78769 1.70512 1.11173 1.04175 1.31173 1.20669 1.06568 0.99952 0.90286 1.17000 0.80452 0.82247 0.82302 1.90712 1.46577 1.51044 1.56553 1.47835 1.39104 1.37871 1.05993 1.23591 0.94153 0.96240 0.92954 1.21125 0.90656 0.88490 0.95722 1.43852 1.44232 1.40073 1.03166 1.19052 0.91479 1.45216 0.83680 0.92389 1.25485 0.96116 0.98442 0.98289 1.69996 0.97001 1.52326 1.34362 0.86322 0.77202 0.77696 0.85647 1.21230 1.21676 1.20239 1.21296 0.93144 0.92424 0.92446 1.22244 0.92386 0.90675 0.97700 1.22512 0.98155 0.90915 0.99617 0.91343 0.90362 0.91438 0.88003 0.91384 0.91579 0.90358 0.77747 0.92912 0.85163 0.96104 0.90485 0.93577 0.96069 0.91709 0.90204 0.92108 0.79850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 9.24 37.16 0.34 -0.46 16 2 C 0.13 0.73 3.57 -67.93 -0.24 0.49 16 3 C -0.16 -0.73 9.24 37.16 0.34 -0.39 16 4 N -0.45 -4.50 2.59 -111.25 -0.29 -4.79 16 5 C 0.18 2.06 11.53 -89.91 -1.04 1.03 16 6 N -0.45 -7.14 7.74 -11.03 -0.09 -7.23 16 7 C -0.05 -0.78 6.67 -83.08 -0.55 -1.34 16 8 C 0.59 12.07 7.67 -12.56 -0.10 11.97 16 9 O -0.57 -12.44 16.31 5.26 0.09 -12.36 16 10 N -0.58 -12.25 2.94 -173.51 -0.51 -12.76 16 11 C 0.05 1.16 6.33 -3.37 -0.02 1.14 16 12 C 0.17 4.19 5.46 -3.36 -0.02 4.17 16 13 N -0.59 -15.66 2.87 -171.76 -0.49 -16.15 16 14 C -0.26 -7.47 9.42 -15.06 -0.14 -7.61 16 15 H 0.06 1.62 7.85 -52.48 -0.41 1.21 16 16 C 0.02 0.49 5.03 -17.43 -0.09 0.41 16 17 N -0.90 -26.60 11.90 55.49 0.66 -25.94 16 18 Si 0.90 21.90 29.56 -169.99 -5.03 16.88 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.13 3.11 6.67 -3.60 -0.02 3.09 16 23 C 0.09 1.95 6.60 -3.60 -0.02 1.93 16 24 C 0.03 0.34 11.22 -16.64 -0.19 0.15 16 25 H 0.07 0.33 7.94 -51.93 -0.41 -0.08 16 26 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.10 0.48 8.07 -51.93 -0.42 0.07 16 29 H 0.07 0.30 7.94 -51.93 -0.41 -0.11 16 30 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.21 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.13 2.62 4.00 -65.40 -0.26 2.36 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 2.08 6.93 -51.93 -0.36 1.72 16 37 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.43 7.94 -51.93 -0.41 1.01 16 40 H 0.08 1.59 6.99 -51.93 -0.36 1.23 16 41 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 42 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -34.95 341.11 -8.68 -43.62 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.41 Total: -0.99 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: -1.75 Total: 14.57 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -0.72 Total: -66.86 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.95 -8.68 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281188310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.455 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds