Wall clock time and date at job start Tue Mar 31 2020 03:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46858 * 2 1 4 4 N 1.46503 * 109.46919 * 119.99818 * 2 1 3 5 5 C 1.35846 * 126.13515 * 299.99675 * 4 2 1 6 6 N 1.30171 * 109.00072 * 179.72151 * 5 4 2 7 7 C 1.35765 * 108.86641 * 0.45261 * 6 5 4 8 8 C 1.47325 * 126.23505 * 179.81963 * 7 6 5 9 9 O 1.21620 * 119.99669 * 186.55267 * 8 7 6 10 10 N 1.34780 * 119.99725 * 6.54826 * 8 7 6 11 11 C 1.46957 * 120.59754 * 6.83029 * 10 8 7 12 12 C 1.53822 * 108.39710 * 124.75746 * 11 10 8 13 13 N 1.46961 * 108.57288 * 49.64000 * 12 11 10 14 14 C 1.36943 * 120.58895 * 124.67189 * 13 12 11 15 15 H 1.08006 * 119.99575 * 223.27419 * 14 13 12 16 16 C 1.38804 * 120.00180 * 43.27951 * 14 13 12 17 17 N 1.31618 * 120.00411 * 9.44012 * 16 14 13 18 18 Si 1.86802 * 119.99970 * 189.43870 * 16 14 13 19 19 H 1.48504 * 109.47083 * 89.99974 * 18 16 14 20 20 H 1.48500 * 109.47238 * 209.99668 * 18 16 14 21 21 H 1.48499 * 109.47055 * 329.99988 * 18 16 14 22 22 C 1.46961 * 118.81749 * 304.64378 * 13 12 11 23 23 C 1.46963 * 120.58787 * 187.11316 * 10 8 7 24 24 C 1.35376 * 126.12982 * 120.00125 * 4 2 1 25 25 H 1.08997 * 109.47420 * 300.00146 * 1 2 3 26 26 H 1.09005 * 109.46922 * 60.00058 * 1 2 3 27 27 H 1.08998 * 109.47144 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47028 * 240.00225 * 2 1 3 29 29 H 1.09000 * 109.47610 * 60.00394 * 3 2 1 30 30 H 1.09012 * 109.46944 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47357 * 299.99448 * 3 2 1 32 32 H 1.07995 * 125.50066 * 0.02562 * 5 4 2 33 33 H 1.08996 * 109.61630 * 244.54410 * 11 10 8 34 34 H 1.09003 * 109.60878 * 5.05612 * 11 10 8 35 35 H 1.09000 * 109.74064 * 289.84986 * 12 11 10 36 36 H 1.09003 * 109.53054 * 169.30748 * 12 11 10 37 37 H 0.97002 * 120.00393 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.61071 * 295.49075 * 22 13 12 39 39 H 1.08994 * 109.75669 * 175.05617 * 22 13 12 40 40 H 1.09001 * 109.61519 * 354.95143 * 23 10 8 41 41 H 1.09007 * 109.60831 * 115.45905 * 23 10 8 42 42 H 1.07999 * 126.57031 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7681 -0.3367 2.4837 6 7 2.3586 -1.1822 3.2780 7 6 3.0169 -2.1028 2.5281 8 6 3.8150 -3.2315 3.0377 9 8 4.4560 -3.9199 2.2668 10 7 3.8347 -3.5009 4.3582 11 6 2.9523 -2.7757 5.2828 12 6 2.1215 -3.8047 6.0686 13 7 3.0304 -4.8246 6.6102 14 6 3.0505 -5.0984 7.9518 15 1 3.9933 -5.2277 8.4625 16 6 1.8591 -5.2099 8.6553 17 7 0.7131 -5.2385 8.0086 18 14 1.8822 -5.3195 10.5200 19 1 1.8067 -3.9533 11.0971 20 1 0.7187 -6.1175 10.9834 21 1 3.1394 -5.9748 10.9617 22 6 3.9170 -5.5459 5.6863 23 6 4.7435 -4.5210 4.8998 24 6 2.7998 -1.7958 1.2167 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.1713 0.5068 2.7976 33 1 3.5529 -2.1830 5.9727 34 1 2.2880 -2.1220 4.7176 35 1 1.3962 -4.2760 5.4053 36 1 1.6024 -3.3055 6.8868 37 1 -0.1195 -5.3161 8.5002 38 1 3.3195 -6.1412 4.9958 39 1 4.5837 -6.1987 6.2496 40 1 5.2627 -5.0201 4.0815 41 1 5.4689 -4.0496 5.5630 42 1 3.1785 -2.3321 0.3592 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281188310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:32 Heat of formation + Delta-G solvation = 41.801588 kcal Electronic energy + Delta-G solvation = -23782.037323 eV Core-core repulsion = 20377.560856 eV Total energy + Delta-G solvation = -3404.476468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.26711 -40.66348 -38.31202 -36.95270 -35.51227 -33.27715 -32.22512 -31.75108 -30.56247 -28.61466 -28.16478 -25.80140 -24.75948 -23.91022 -23.71978 -21.77600 -21.35849 -20.09039 -18.66333 -17.98170 -17.41917 -16.93518 -16.73563 -16.60546 -15.82558 -15.54552 -15.47766 -15.24634 -15.12993 -14.82245 -14.77143 -14.55357 -14.08868 -13.76418 -13.30896 -13.18987 -13.14026 -13.06897 -12.70559 -12.50583 -12.36878 -12.28513 -12.19803 -12.02299 -11.98341 -11.64922 -11.24299 -10.77079 -10.64187 -10.31279 -9.85810 -9.51378 -8.46738 -7.86440 -5.56442 0.59483 1.45093 1.47534 1.48558 1.58416 1.67556 2.18242 2.48728 2.55338 3.25495 3.38857 3.60281 3.69180 3.84037 3.97562 4.02129 4.15344 4.28524 4.32515 4.44843 4.50759 4.63993 4.68960 4.71324 4.74776 4.85695 4.86101 4.88180 4.97424 5.04768 5.08663 5.17784 5.28593 5.31140 5.48555 5.57068 5.64595 5.76400 6.21436 6.44320 6.53509 6.85313 7.13714 7.24585 7.74055 8.39707 9.15186 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.003781 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.216600 B = 7404.535625 C = 8175.643728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 C -0.160 4.160 4 N -0.442 5.442 5 C 0.199 3.801 6 N -0.494 5.494 7 C -0.095 4.095 8 C 0.589 3.411 9 O -0.591 6.591 10 N -0.591 5.591 11 C 0.075 3.925 12 C 0.178 3.822 13 N -0.608 5.608 14 C -0.280 4.280 15 H 0.061 0.939 16 C -0.034 4.034 17 N -0.930 5.930 18 Si 0.974 3.026 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.267 1.267 22 C 0.135 3.865 23 C 0.104 3.896 24 C 0.048 3.952 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.050 0.950 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.245 0.755 33 H 0.050 0.950 34 H 0.150 0.850 35 H -0.010 1.010 36 H 0.052 0.948 37 H 0.253 0.747 38 H 0.003 0.997 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 16.336 -18.366 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 C -0.217 4.217 4 N -0.123 5.123 5 C -0.084 4.084 6 N -0.213 5.213 7 C -0.222 4.222 8 C 0.379 3.621 9 O -0.473 6.473 10 N -0.321 5.321 11 C -0.049 4.049 12 C 0.052 3.948 13 N -0.331 5.331 14 C -0.410 4.410 15 H 0.079 0.921 16 C -0.231 4.231 17 N -0.572 5.572 18 Si 0.800 3.200 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.191 1.191 22 C 0.009 3.991 23 C -0.021 4.021 24 C -0.093 4.093 25 H 0.089 0.911 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.134 0.866 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.260 0.740 33 H 0.068 0.932 34 H 0.166 0.834 35 H 0.008 0.992 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.021 0.979 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.409 16.037 -17.937 24.064 hybrid contribution -0.225 -0.625 0.469 0.813 sum -0.634 15.411 -17.468 23.303 Atomic orbital electron populations 1.22200 0.91843 1.02961 1.04933 1.21946 0.96450 0.94745 0.84908 1.22185 1.01577 0.93020 1.04923 1.45905 1.36407 1.20870 1.09122 1.25826 1.02346 1.01422 0.78821 1.70190 1.12830 1.05386 1.32924 1.20358 1.09210 1.00615 0.92010 1.17498 0.80212 0.82794 0.81561 1.90673 1.47683 1.52226 1.56761 1.47901 1.39377 1.38178 1.06599 1.23356 0.93932 0.94894 0.92715 1.20899 0.90544 0.88805 0.94539 1.44116 1.44711 1.40959 1.03363 1.19379 0.91816 1.45117 0.84711 0.92135 1.26291 0.95589 0.98160 1.03086 1.70157 0.97530 1.53403 1.36159 0.85204 0.77300 0.77761 0.79699 1.20554 1.21833 1.19115 1.21346 0.92811 0.93026 0.91960 1.22077 0.92033 0.90224 0.97719 1.22711 0.96910 0.91061 0.98599 0.91060 0.87940 0.93071 0.86561 0.91025 0.92718 0.88017 0.73957 0.93168 0.83410 0.99185 0.92947 0.93794 0.97914 0.90772 0.89337 0.91226 0.78189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.24 71.98 0.67 -0.37 16 2 C 0.12 0.98 3.57 44.99 0.16 1.14 16 3 C -0.16 -0.83 9.24 71.98 0.67 -0.17 16 4 N -0.44 -7.61 2.59 -505.88 -1.31 -8.92 16 5 C 0.20 4.04 11.53 180.10 2.08 6.11 16 6 N -0.49 -15.22 7.74 -188.81 -1.46 -16.68 16 7 C -0.09 -3.19 6.67 40.50 0.27 -2.92 16 8 C 0.59 24.29 7.67 86.63 0.66 24.96 16 9 O -0.59 -26.11 16.31 -4.10 -0.07 -26.17 16 10 N -0.59 -25.49 2.94 -821.12 -2.41 -27.91 16 11 C 0.07 3.28 6.33 86.57 0.55 3.82 16 12 C 0.18 9.38 5.46 86.57 0.47 9.85 16 13 N -0.61 -33.21 2.87 -697.34 -2.00 -35.21 16 14 C -0.28 -16.10 9.42 84.03 0.79 -15.31 16 15 H 0.06 3.39 7.85 -2.91 -0.02 3.37 16 16 C -0.03 -1.94 5.03 84.86 0.43 -1.51 16 17 N -0.93 -56.72 11.90 21.65 0.26 -56.46 16 18 Si 0.97 45.43 29.56 68.60 2.03 47.45 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 C 0.13 6.44 6.67 86.42 0.58 7.02 16 23 C 0.10 4.35 6.60 86.42 0.57 4.92 16 24 C 0.05 1.18 11.22 83.72 0.94 2.12 16 25 H 0.07 0.44 7.94 -2.39 -0.02 0.42 16 26 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.12 0.67 8.07 -2.39 -0.02 0.66 16 29 H 0.07 0.35 7.94 -2.39 -0.02 0.33 16 30 H 0.05 0.44 8.14 -2.38 -0.02 0.43 16 31 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.24 2.74 8.06 -2.91 -0.02 2.71 16 33 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.15 6.06 4.00 -28.99 -0.12 5.94 16 35 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H 0.05 2.96 6.93 -2.39 -0.02 2.95 16 37 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.00 0.14 8.14 -2.39 -0.02 0.13 16 39 H 0.07 3.32 7.94 -2.39 -0.02 3.31 16 40 H 0.09 3.55 6.99 -2.39 -0.02 3.54 16 41 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 42 H 0.20 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -78.04 341.11 4.76 -73.28 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.90 Total: 10.94 kcal Atomic # 6 Polarization: 30.84 SS G_CDS: 8.83 Total: 39.67 kcal Atomic # 7 Polarization: -138.24 SS G_CDS: -6.93 Total: -145.17 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.07 Total: -26.17 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -78.04 4.76 -73.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281188310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.080 kcal (2) G-P(sol) polarization free energy of solvation -78.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds