Wall clock time and date at job start Tue Mar 31 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40091 * 126.03566 * 2 1 4 4 C 1.30837 * 108.20385 * 180.23329 * 3 2 1 5 5 C 1.39874 * 108.20226 * 359.78007 * 4 3 2 6 6 C 1.34946 * 126.03802 * 179.84629 * 2 1 3 7 7 C 1.50694 * 126.12892 * 0.03686 * 6 2 1 8 8 H 1.09003 * 110.21698 * 179.90240 * 7 6 2 9 9 C 1.54481 * 110.24438 * 301.83034 * 7 6 2 10 10 H 1.09000 * 110.97289 * 26.38369 * 9 7 6 11 11 N 1.46902 * 110.97016 * 262.65920 * 9 7 6 12 12 C 1.46903 * 110.99837 * 158.09221 * 11 9 7 13 13 C 1.52998 * 109.46949 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47334 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99520 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00467 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99651 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00239 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47520 * 89.99925 * 18 16 14 20 20 H 1.48506 * 109.47120 * 209.99824 * 18 16 14 21 21 H 1.48503 * 109.47032 * 329.99736 * 18 16 14 22 22 C 1.54634 * 101.76436 * 144.50543 * 9 7 6 23 23 C 1.51281 * 104.19318 * 335.20130 * 22 9 7 24 24 O 1.21284 * 124.94215 * 196.22066 * 23 22 9 25 25 N 1.34422 * 110.11745 * 16.25483 * 23 22 9 26 26 C 1.46499 * 124.34820 * 180.38377 * 25 23 22 27 27 H 1.09003 * 109.46696 * 272.50424 * 1 2 3 28 28 H 1.08990 * 109.47178 * 32.51019 * 1 2 3 29 29 H 1.09000 * 109.46491 * 152.51471 * 1 2 3 30 30 H 1.07998 * 125.89701 * 179.81141 * 4 3 2 31 31 H 1.08002 * 126.03590 * 180.02562 * 5 4 3 32 32 H 1.00893 * 111.00153 * 34.13625 * 11 9 7 33 33 H 1.08998 * 109.46570 * 299.99722 * 12 11 9 34 34 H 1.08992 * 109.47222 * 60.00140 * 12 11 9 35 35 H 1.09007 * 109.47065 * 299.99423 * 13 12 11 36 36 H 1.09001 * 109.47692 * 59.99507 * 13 12 11 37 37 H 0.97000 * 119.99618 * 180.02562 * 17 16 14 38 38 H 1.08994 * 110.48394 * 93.88147 * 22 9 7 39 39 H 1.09003 * 110.48191 * 216.52352 * 22 9 7 40 40 H 1.09001 * 109.47364 * 275.37362 * 26 25 23 41 41 H 1.08995 * 109.46946 * 35.37799 * 26 25 23 42 42 H 1.09006 * 109.46736 * 155.37151 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7322 -0.0051 5 6 3.5437 -0.6665 -0.0033 6 6 2.2589 -1.0912 0.0029 7 6 1.7975 -2.5257 0.0060 8 1 2.6558 -3.1976 0.0062 9 6 0.9054 -2.7977 1.2376 10 1 0.4179 -1.8833 1.5757 11 7 1.6819 -3.4090 2.3245 12 6 1.0260 -3.1999 3.6222 13 6 1.8626 -3.8486 4.7268 14 6 1.1901 -3.6336 6.0582 15 1 0.2593 -3.0884 6.1111 16 6 1.7635 -4.1319 7.2087 17 7 2.8973 -4.7954 7.1442 18 14 0.9303 -3.8648 8.8590 19 1 0.0002 -4.9899 9.1319 20 1 1.9587 -3.8023 9.9285 21 1 0.1694 -2.5898 8.8288 22 6 -0.1271 -3.7961 0.6647 23 6 -0.1391 -3.5063 -0.8200 24 8 -1.0021 -3.8684 -1.5915 25 7 0.9462 -2.7898 -1.1600 26 6 1.2416 -2.3318 -2.5198 27 1 -0.3633 0.0449 1.0267 28 1 -0.3633 0.8665 -0.5523 29 1 -0.3632 -0.9117 -0.4743 30 1 4.4054 1.3711 -0.0093 31 1 4.4212 -1.2962 -0.0061 32 1 2.6272 -3.0565 2.3361 33 1 0.9357 -2.1310 3.8155 34 1 0.0340 -3.6511 3.6048 35 1 1.9533 -4.9175 4.5336 36 1 2.8545 -3.3970 4.7441 37 1 3.3006 -5.1463 7.9536 38 1 0.1905 -4.8220 0.8507 39 1 -1.1117 -3.6163 1.0965 40 1 1.7492 -3.1253 -3.0683 41 1 0.3114 -2.0768 -3.0274 42 1 1.8841 -1.4523 -2.4754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285344641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:11 Heat of formation + Delta-G solvation = 52.957665 kcal Electronic energy + Delta-G solvation = -23868.450764 eV Core-core repulsion = 20464.458061 eV Total energy + Delta-G solvation = -3403.992704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.86460 -40.27770 -37.24728 -35.48733 -33.38264 -33.21609 -31.65070 -31.16402 -28.87643 -27.20737 -26.78301 -26.07553 -24.04421 -21.70610 -21.16434 -20.81263 -20.51844 -19.38503 -17.28731 -16.90495 -16.43338 -16.16008 -15.84091 -15.34104 -14.88922 -14.56164 -14.40216 -14.15025 -13.97051 -13.66685 -13.56653 -13.34382 -13.01549 -12.93483 -12.69811 -12.57561 -12.42858 -12.13443 -11.77173 -11.32659 -11.14171 -10.95531 -10.85919 -10.61221 -10.17704 -9.98691 -9.56398 -9.46160 -9.22429 -9.08335 -8.74100 -8.41721 -8.15985 -6.05331 -4.08277 1.52355 2.28361 2.39463 2.55362 2.82999 3.29038 3.35607 3.38145 3.98791 4.07904 4.20062 4.35362 4.42270 4.62834 4.79409 4.93391 4.96253 5.01742 5.08755 5.15494 5.21190 5.31175 5.32636 5.44840 5.48274 5.52645 5.64306 5.84284 5.87519 6.14594 6.19875 6.24459 6.45477 6.71378 6.80457 6.83452 7.20692 7.50298 7.55903 7.65380 7.79272 7.94503 7.98231 8.35065 8.98445 9.56099 11.05987 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017046 B = 0.003956 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.172657 B = 7075.884568 C = 7944.269324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.359 5.359 3 N -0.291 5.291 4 C 0.046 3.954 5 C -0.253 4.253 6 C 0.070 3.930 7 C 0.194 3.806 8 H 0.118 0.882 9 C 0.081 3.919 10 H 0.063 0.937 11 N -0.673 5.673 12 C 0.066 3.934 13 C 0.026 3.974 14 C -0.524 4.524 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.148 4.148 23 C 0.521 3.479 24 O -0.529 6.529 25 N -0.618 5.618 26 C 0.096 3.904 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.185 0.815 31 H 0.152 0.848 32 H 0.344 0.656 33 H 0.018 0.982 34 H 0.062 0.938 35 H 0.027 0.973 36 H 0.015 0.985 37 H 0.261 0.739 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.403 7.941 -17.918 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.142 5.142 3 N -0.113 5.113 4 C -0.140 4.140 5 C -0.284 4.284 6 C -0.059 4.059 7 C 0.088 3.912 8 H 0.135 0.865 9 C -0.031 4.031 10 H 0.081 0.919 11 N -0.305 5.305 12 C -0.062 4.062 13 C -0.011 4.011 14 C -0.562 4.562 15 H 0.072 0.928 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.188 4.188 23 C 0.309 3.691 24 O -0.405 6.405 25 N -0.354 5.354 26 C -0.046 4.046 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.202 0.798 31 H 0.170 0.830 32 H 0.163 0.837 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.142 0.858 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.945 8.074 -18.392 20.180 hybrid contribution 0.481 0.455 1.182 1.355 sum -1.464 8.529 -17.209 19.263 Atomic orbital electron populations 1.21985 0.74473 1.04469 1.03716 1.48411 1.06440 1.03142 1.56160 1.77400 1.01936 1.07788 1.24176 1.23851 0.95236 0.94975 0.99890 1.21327 0.96021 0.95255 1.15751 1.21035 0.91585 0.89788 1.03458 1.20510 0.95233 0.89560 0.85881 0.86458 1.22507 0.93830 0.95930 0.90856 0.91894 1.60749 1.05508 1.60362 1.03906 1.22256 0.98968 0.97891 0.87050 1.19063 0.94577 0.96719 0.90774 1.21130 1.07931 1.35407 0.91776 0.92786 1.24982 0.94922 0.95113 0.99185 1.69966 1.17888 1.36689 1.28551 0.86596 0.79200 0.78582 0.83628 1.20578 1.21184 1.19943 1.22559 1.01571 1.03436 0.91270 1.21060 0.80187 0.76661 0.91163 1.90729 1.38860 1.53315 1.57643 1.48301 1.23870 1.54982 1.08213 1.21548 1.01903 0.99815 0.81327 0.90363 0.89240 0.89543 0.79798 0.83031 0.83694 0.96377 0.91926 0.95449 0.96673 0.92921 0.85788 0.87904 0.92116 0.90964 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.91 9.86 59.85 0.59 1.50 16 2 N -0.36 -4.17 4.00 -63.89 -0.26 -4.43 16 3 N -0.29 -3.71 12.58 30.63 0.39 -3.32 16 4 C 0.05 0.49 12.03 -17.36 -0.21 0.28 16 5 C -0.25 -2.63 10.71 -40.01 -0.43 -3.05 16 6 C 0.07 0.77 4.53 -82.27 -0.37 0.39 16 7 C 0.19 2.04 2.94 -68.17 -0.20 1.84 16 8 H 0.12 1.16 8.03 -51.93 -0.42 0.74 16 9 C 0.08 0.98 2.59 -66.08 -0.17 0.81 16 10 H 0.06 0.79 5.80 -51.93 -0.30 0.49 16 11 N -0.67 -10.10 6.31 -105.00 -0.66 -10.76 16 12 C 0.07 1.25 5.50 -3.82 -0.02 1.23 16 13 C 0.03 0.64 5.23 -27.89 -0.15 0.49 16 14 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.15 -1.78 6.59 -26.74 -0.18 -1.95 16 23 C 0.52 6.65 7.23 -10.86 -0.08 6.57 16 24 O -0.53 -8.50 17.67 5.55 0.10 -8.40 16 25 N -0.62 -6.58 2.09 -174.02 -0.36 -6.94 16 26 C 0.10 0.86 10.71 59.85 0.64 1.51 16 27 H 0.08 0.73 7.70 -51.93 -0.40 0.33 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.82 5.76 -51.93 -0.30 0.52 16 30 H 0.19 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.34 5.01 8.46 -39.30 -0.33 4.68 16 33 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.12 1.56 8.08 -51.93 -0.42 1.14 16 39 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 42 H 0.07 0.62 7.08 -51.93 -0.37 0.25 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -32.44 347.35 -7.13 -39.57 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.30 Total: 1.71 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.98 Total: -3.43 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.16 Total: -50.87 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.10 Total: -8.40 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.44 -7.13 -39.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285344641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.528 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds