Wall clock time and date at job start Tue Mar 31 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40091 * 126.03566 * 2 1 4 4 C 1.30837 * 108.20385 * 180.23329 * 3 2 1 5 5 C 1.39874 * 108.20226 * 359.78007 * 4 3 2 6 6 C 1.34946 * 126.03802 * 179.84629 * 2 1 3 7 7 C 1.50694 * 126.12892 * 0.03686 * 6 2 1 8 8 H 1.09003 * 110.21698 * 179.90240 * 7 6 2 9 9 C 1.54481 * 110.24438 * 301.83034 * 7 6 2 10 10 H 1.09000 * 110.97289 * 26.38369 * 9 7 6 11 11 N 1.46902 * 110.97016 * 262.65920 * 9 7 6 12 12 C 1.46903 * 110.99837 * 158.09221 * 11 9 7 13 13 C 1.52998 * 109.46949 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47334 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99520 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00467 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99651 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00239 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47520 * 89.99925 * 18 16 14 20 20 H 1.48506 * 109.47120 * 209.99824 * 18 16 14 21 21 H 1.48503 * 109.47032 * 329.99736 * 18 16 14 22 22 C 1.54634 * 101.76436 * 144.50543 * 9 7 6 23 23 C 1.51281 * 104.19318 * 335.20130 * 22 9 7 24 24 O 1.21284 * 124.94215 * 196.22066 * 23 22 9 25 25 N 1.34422 * 110.11745 * 16.25483 * 23 22 9 26 26 C 1.46499 * 124.34820 * 180.38377 * 25 23 22 27 27 H 1.09003 * 109.46696 * 272.50424 * 1 2 3 28 28 H 1.08990 * 109.47178 * 32.51019 * 1 2 3 29 29 H 1.09000 * 109.46491 * 152.51471 * 1 2 3 30 30 H 1.07998 * 125.89701 * 179.81141 * 4 3 2 31 31 H 1.08002 * 126.03590 * 180.02562 * 5 4 3 32 32 H 1.00893 * 111.00153 * 34.13625 * 11 9 7 33 33 H 1.08998 * 109.46570 * 299.99722 * 12 11 9 34 34 H 1.08992 * 109.47222 * 60.00140 * 12 11 9 35 35 H 1.09007 * 109.47065 * 299.99423 * 13 12 11 36 36 H 1.09001 * 109.47692 * 59.99507 * 13 12 11 37 37 H 0.97000 * 119.99618 * 180.02562 * 17 16 14 38 38 H 1.08994 * 110.48394 * 93.88147 * 22 9 7 39 39 H 1.09003 * 110.48191 * 216.52352 * 22 9 7 40 40 H 1.09001 * 109.47364 * 275.37362 * 26 25 23 41 41 H 1.08995 * 109.46946 * 35.37799 * 26 25 23 42 42 H 1.09006 * 109.46736 * 155.37151 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7322 -0.0051 5 6 3.5437 -0.6665 -0.0033 6 6 2.2589 -1.0912 0.0029 7 6 1.7975 -2.5257 0.0060 8 1 2.6558 -3.1976 0.0062 9 6 0.9054 -2.7977 1.2376 10 1 0.4179 -1.8833 1.5757 11 7 1.6819 -3.4090 2.3245 12 6 1.0260 -3.1999 3.6222 13 6 1.8626 -3.8486 4.7268 14 6 1.1901 -3.6336 6.0582 15 1 0.2593 -3.0884 6.1111 16 6 1.7635 -4.1319 7.2087 17 7 2.8973 -4.7954 7.1442 18 14 0.9303 -3.8648 8.8590 19 1 0.0002 -4.9899 9.1319 20 1 1.9587 -3.8023 9.9285 21 1 0.1694 -2.5898 8.8288 22 6 -0.1271 -3.7961 0.6647 23 6 -0.1391 -3.5063 -0.8200 24 8 -1.0021 -3.8684 -1.5915 25 7 0.9462 -2.7898 -1.1600 26 6 1.2416 -2.3318 -2.5198 27 1 -0.3633 0.0449 1.0267 28 1 -0.3633 0.8665 -0.5523 29 1 -0.3632 -0.9117 -0.4743 30 1 4.4054 1.3711 -0.0093 31 1 4.4212 -1.2962 -0.0061 32 1 2.6272 -3.0565 2.3361 33 1 0.9357 -2.1310 3.8155 34 1 0.0340 -3.6511 3.6048 35 1 1.9533 -4.9175 4.5336 36 1 2.8545 -3.3970 4.7441 37 1 3.3006 -5.1463 7.9536 38 1 0.1905 -4.8220 0.8507 39 1 -1.1117 -3.6163 1.0965 40 1 1.7492 -3.1253 -3.0683 41 1 0.3114 -2.0768 -3.0274 42 1 1.8841 -1.4523 -2.4754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285344641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:11 Heat of formation + Delta-G solvation = 30.872698 kcal Electronic energy + Delta-G solvation = -23869.408440 eV Core-core repulsion = 20464.458061 eV Total energy + Delta-G solvation = -3404.950380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.73628 -41.22892 -38.39523 -36.77998 -35.04274 -34.16803 -33.02357 -32.05508 -30.47500 -28.07352 -27.59947 -27.22662 -25.73347 -22.69709 -22.57651 -21.98558 -21.42764 -20.34759 -18.53232 -18.14001 -17.78699 -17.26819 -16.83777 -16.50439 -16.22006 -16.02970 -15.48328 -15.13834 -14.96246 -14.77998 -14.53161 -14.40178 -14.37632 -13.91746 -13.76584 -13.58310 -13.38929 -13.28329 -13.14760 -12.87464 -12.70713 -12.45120 -12.29080 -11.91110 -11.69324 -11.41542 -11.28025 -11.05226 -10.53412 -10.37996 -9.98906 -9.57095 -9.45634 -8.18152 -6.28360 0.67873 1.37906 1.42662 1.42931 1.49966 1.53518 1.72178 1.96798 2.41877 2.95019 3.12496 3.16342 3.25255 3.59506 3.62901 3.83028 4.06092 4.19184 4.23938 4.27706 4.31167 4.47165 4.49496 4.56105 4.57457 4.65952 4.71224 4.73382 4.77052 4.92339 5.07315 5.09887 5.32859 5.47596 5.69356 5.70096 5.77858 5.83542 5.94809 6.07012 6.23316 6.42763 6.68225 6.89075 6.95544 7.40845 8.93663 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017046 B = 0.003956 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.172657 B = 7075.884568 C = 7944.269324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.367 5.367 3 N -0.323 5.323 4 C 0.043 3.957 5 C -0.255 4.255 6 C 0.062 3.938 7 C 0.204 3.796 8 H 0.130 0.870 9 C 0.086 3.914 10 H 0.064 0.936 11 N -0.671 5.671 12 C 0.087 3.913 13 C 0.032 3.968 14 C -0.543 4.543 15 H 0.059 0.941 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.960 3.040 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.265 1.265 22 C -0.144 4.144 23 C 0.524 3.476 24 O -0.565 6.565 25 N -0.609 5.609 26 C 0.096 3.904 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.212 0.788 31 H 0.172 0.828 32 H 0.348 0.652 33 H 0.017 0.983 34 H 0.065 0.935 35 H 0.000 1.000 36 H -0.006 1.006 37 H 0.263 0.737 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 8.689 -18.178 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.150 5.150 3 N -0.145 5.145 4 C -0.141 4.141 5 C -0.285 4.285 6 C -0.067 4.067 7 C 0.099 3.901 8 H 0.148 0.852 9 C -0.026 4.026 10 H 0.082 0.918 11 N -0.303 5.303 12 C -0.042 4.042 13 C -0.006 4.006 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.785 3.215 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.189 1.189 22 C -0.185 4.185 23 C 0.313 3.687 24 O -0.444 6.444 25 N -0.343 5.343 26 C -0.045 4.045 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.228 0.772 31 H 0.189 0.811 32 H 0.168 0.832 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.019 0.981 36 H 0.012 0.988 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.974 8.843 -18.670 20.752 hybrid contribution 0.554 0.240 1.215 1.357 sum -1.420 9.083 -17.455 19.728 Atomic orbital electron populations 1.22062 0.73870 1.04938 1.03961 1.48567 1.06945 1.03073 1.56377 1.77366 1.02962 1.08728 1.25479 1.24379 0.95448 0.95618 0.98684 1.21656 0.96435 0.95500 1.14907 1.21128 0.91991 0.89630 1.03944 1.20415 0.95029 0.89837 0.84863 0.85223 1.22426 0.93870 0.95747 0.90521 0.91783 1.60583 1.05808 1.61061 1.02878 1.21817 0.98065 0.97044 0.87265 1.18906 0.94309 0.95249 0.92089 1.21602 1.08213 1.35132 0.93206 0.92300 1.25873 0.95518 0.94818 1.03162 1.70090 1.19406 1.37787 1.29640 0.85525 0.78220 0.78904 0.78862 1.19865 1.20891 1.18925 1.22522 1.01866 1.03126 0.90985 1.21053 0.80120 0.76484 0.91043 1.90714 1.40245 1.54979 1.58425 1.48300 1.23093 1.53972 1.08941 1.21651 1.02062 1.00457 0.80334 0.90274 0.88237 0.89573 0.77194 0.81077 0.83219 0.96448 0.91666 0.98140 0.98771 0.92808 0.86128 0.87282 0.90936 0.91174 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.68 9.86 127.77 1.26 2.94 16 2 N -0.37 -7.99 4.00 -356.04 -1.42 -9.42 16 3 N -0.32 -7.77 12.58 -57.02 -0.72 -8.49 16 4 C 0.04 0.84 12.03 85.24 1.03 1.86 16 5 C -0.26 -4.70 10.71 21.99 0.24 -4.46 16 6 C 0.06 1.24 4.53 41.40 0.19 1.42 16 7 C 0.20 3.91 2.94 44.70 0.13 4.04 16 8 H 0.13 2.25 8.03 -2.39 -0.02 2.23 16 9 C 0.09 1.96 2.59 45.97 0.12 2.08 16 10 H 0.06 1.51 5.80 -2.39 -0.01 1.50 16 11 N -0.67 -19.46 6.31 -486.11 -3.07 -22.53 16 12 C 0.09 3.23 5.50 86.30 0.48 3.71 16 13 C 0.03 1.58 5.23 29.85 0.16 1.74 16 14 C -0.54 -29.68 9.11 25.60 0.23 -29.45 16 15 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 16 C 0.00 0.25 5.46 84.65 0.46 0.72 16 17 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 18 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 22 C -0.14 -3.31 6.59 30.59 0.20 -3.10 16 23 C 0.52 12.81 7.23 87.90 0.64 13.45 16 24 O -0.56 -17.80 17.67 -3.04 -0.05 -17.85 16 25 N -0.61 -11.97 2.09 -823.08 -1.72 -13.69 16 26 C 0.10 1.56 10.71 127.77 1.37 2.93 16 27 H 0.08 1.40 7.70 -2.39 -0.02 1.38 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 1.53 5.76 -2.39 -0.01 1.52 16 30 H 0.21 2.62 8.06 -2.91 -0.02 2.59 16 31 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.35 9.75 8.46 -89.70 -0.76 9.00 16 33 H 0.02 0.65 8.09 -2.39 -0.02 0.63 16 34 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 36 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.12 2.91 8.08 -2.39 -0.02 2.89 16 39 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.20 8.05 -2.39 -0.02 1.18 16 42 H 0.08 1.19 7.08 -2.38 -0.02 1.18 16 Total: -1.00 -69.13 347.35 2.09 -67.04 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.27 Total: 16.60 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 6.49 Total: -2.14 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -6.64 Total: -108.88 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.05 Total: -17.85 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -69.13 2.09 -67.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285344641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.916 kcal (2) G-P(sol) polarization free energy of solvation -69.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds