Wall clock time and date at job start Tue Mar 31 2020 03:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46969 * 2 1 4 4 C 1.36943 * 119.99805 * 275.50389 * 3 2 1 5 5 H 1.07997 * 119.99802 * 327.67768 * 4 3 2 6 6 C 1.38810 * 119.99899 * 147.68155 * 4 3 2 7 7 N 1.31615 * 120.00001 * 339.21036 * 6 4 3 8 8 Si 1.86803 * 119.99619 * 159.21271 * 6 4 3 9 9 H 1.48497 * 109.46828 * 90.00404 * 8 6 4 10 10 H 1.48504 * 109.46600 * 209.99684 * 8 6 4 11 11 H 1.48494 * 109.47347 * 329.99696 * 8 6 4 12 12 C 1.46498 * 120.00081 * 95.50291 * 3 2 1 13 13 H 1.09008 * 109.39793 * 235.38667 * 12 3 2 14 14 C 1.53064 * 109.40112 * 115.55705 * 12 3 2 15 15 C 1.53342 * 108.42632 * 288.76665 * 14 12 3 16 16 C 1.52925 * 108.67737 * 292.47371 * 15 14 12 17 17 N 1.45752 * 110.48628 * 50.74956 * 16 15 14 18 18 C 1.40152 * 117.94548 * 160.93128 * 17 16 15 19 19 C 1.40403 * 125.97483 * 4.71108 * 18 17 16 20 20 C 1.35245 * 107.86809 * 179.83297 * 19 18 17 21 21 N 1.34965 * 107.86059 * 0.42936 * 20 19 18 22 22 C 1.46504 * 125.97465 * 179.69665 * 21 20 19 23 23 N 1.31230 * 125.97403 * 185.02648 * 18 17 16 24 24 C 1.33353 * 124.10665 * 340.92485 * 17 16 15 25 25 O 1.21300 * 118.24784 * 182.20342 * 24 17 16 26 26 H 1.08999 * 109.47448 * 299.99739 * 1 2 3 27 27 H 1.09000 * 109.47256 * 60.00476 * 1 2 3 28 28 H 1.09007 * 109.46989 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47265 * 239.99866 * 2 1 3 30 30 H 1.09000 * 109.47256 * 119.99524 * 2 1 3 31 31 H 0.97004 * 120.00107 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.67329 * 169.03563 * 14 12 3 33 33 H 1.08997 * 109.70689 * 48.52385 * 14 12 3 34 34 H 1.08997 * 109.61016 * 172.71418 * 15 14 12 35 35 H 1.09004 * 109.60106 * 52.22489 * 15 14 12 36 36 H 1.08991 * 109.29967 * 171.06017 * 16 15 14 37 37 H 1.08993 * 109.29558 * 290.43927 * 16 15 14 38 38 H 1.08006 * 126.06761 * 359.97438 * 19 18 17 39 39 H 1.08005 * 126.06867 * 180.16358 * 20 19 18 40 40 H 1.09005 * 109.46500 * 270.01247 * 22 21 20 41 41 H 1.08992 * 109.47200 * 30.01492 * 22 21 20 42 42 H 1.08997 * 109.46790 * 150.01702 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1392 2.0647 -1.1805 5 1 2.3924 1.5355 -2.0873 6 6 1.9366 3.4376 -1.2116 7 7 1.2489 4.0231 -0.2542 8 14 2.6398 4.4540 -2.6123 9 1 1.6469 4.5327 -3.7137 10 1 2.9478 5.8225 -2.1246 11 1 3.8837 3.8149 -3.1117 12 6 2.3771 2.0313 1.2629 13 1 1.8139 2.9590 1.3654 14 6 3.8756 2.3433 1.2663 15 6 4.6451 1.0239 1.4015 16 6 4.3840 0.4450 2.7926 17 7 2.9530 0.3997 3.0659 18 6 2.5056 -0.4518 4.0852 19 6 3.3187 -1.2090 4.9436 20 6 2.5103 -1.8924 5.7853 21 7 1.2334 -1.5904 5.4693 22 6 0.0359 -2.1175 6.1284 23 7 1.2533 -0.6853 4.4004 24 6 2.0428 1.1177 2.4069 25 8 0.8827 1.0278 2.7496 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.1076 4.9826 -0.2757 32 1 4.1130 2.9944 2.1076 33 1 4.1509 2.8347 0.3331 34 1 5.7121 1.2082 1.2765 35 1 4.3017 0.3209 0.6425 36 1 4.7929 -0.5639 2.8455 37 1 4.8739 1.0688 3.5401 38 1 4.3984 -1.2385 4.9350 39 1 2.8297 -2.5643 6.5683 40 1 -0.2817 -3.0320 5.6273 41 1 0.2617 -2.3348 7.1723 42 1 -0.7631 -1.3780 6.0757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298094726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:32 Heat of formation + Delta-G solvation = 92.844955 kcal Electronic energy + Delta-G solvation = -25048.508983 eV Core-core repulsion = 21646.245922 eV Total energy + Delta-G solvation = -3402.263061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20731 -39.66777 -36.01516 -35.74985 -33.26490 -31.76016 -31.41774 -29.93316 -29.11850 -27.49712 -26.25752 -24.61878 -23.32080 -22.50223 -20.92213 -20.31654 -19.98888 -17.95685 -17.24672 -16.49549 -15.83748 -15.64138 -15.50421 -14.92624 -14.45811 -13.98660 -13.86468 -13.72690 -13.35053 -13.05378 -12.87730 -12.60735 -12.44639 -12.35572 -12.14987 -11.94962 -11.53733 -11.14028 -10.93695 -10.64040 -10.60011 -10.49134 -10.29736 -10.24044 -10.12897 -9.92527 -9.70343 -9.55066 -8.71227 -8.57940 -8.55016 -7.77015 -6.63825 -5.69586 -3.31521 2.10027 2.52030 2.83901 3.37105 3.44962 3.46874 3.48876 3.70892 4.50448 4.66250 4.83260 5.15121 5.17625 5.28346 5.32466 5.38137 5.42058 5.58122 5.61211 5.64106 5.79571 5.82684 5.95399 6.14940 6.23640 6.26973 6.37475 6.49106 6.61081 6.73792 6.77606 6.91360 7.02881 7.16050 7.18105 7.27553 7.43261 7.56378 7.72222 7.85044 8.28116 8.46501 8.92170 9.15652 9.80110 10.35030 11.25504 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.005146 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.578912 B = 5440.275661 C = 5942.719475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.144 3.856 3 N -0.570 5.570 4 C -0.250 4.250 5 H 0.069 0.931 6 C 0.008 3.992 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.168 3.832 13 H 0.131 0.869 14 C -0.132 4.132 15 C -0.128 4.128 16 C 0.120 3.880 17 N -0.525 5.525 18 C 0.293 3.707 19 C -0.292 4.292 20 C 0.061 3.939 21 N -0.385 5.385 22 C 0.108 3.892 23 N -0.265 5.265 24 C 0.508 3.492 25 O -0.496 6.496 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.024 0.976 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.256 0.744 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.147 0.853 39 H 0.171 0.829 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 -10.930 11.794 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.018 3.982 3 N -0.295 5.295 4 C -0.380 4.380 5 H 0.086 0.914 6 C -0.192 4.192 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.215 1.215 11 H -0.204 1.204 12 C 0.060 3.940 13 H 0.147 0.853 14 C -0.172 4.172 15 C -0.166 4.166 16 C -0.002 4.002 17 N -0.257 5.257 18 C 0.038 3.962 19 C -0.324 4.324 20 C -0.086 4.086 21 N -0.168 5.168 22 C -0.034 4.034 23 N -0.094 5.094 24 C 0.297 3.703 25 O -0.365 6.365 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.164 0.836 39 H 0.188 0.812 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.524 -10.521 11.723 16.389 hybrid contribution 1.254 0.328 -0.390 1.353 sum 5.778 -10.193 11.334 16.301 Atomic orbital electron populations 1.22285 0.98992 0.98320 1.02751 1.20886 0.92859 0.86775 0.97631 1.43685 1.74270 1.09740 1.01771 1.18980 1.41576 0.90118 0.87315 0.91354 1.25103 0.98295 0.98152 0.97676 1.69834 1.38880 1.10029 1.34254 0.86392 0.79227 0.79668 0.82105 1.21374 1.21529 1.20353 1.20820 0.94649 0.96452 0.82096 0.85251 1.22075 0.97308 0.95515 1.02282 1.21816 1.00516 0.99457 0.94801 1.21506 0.78699 1.01460 0.98548 1.45146 1.08598 1.39822 1.32145 1.19639 0.91311 0.93648 0.91649 1.21082 1.00208 1.08252 1.02817 1.22334 0.84557 1.01010 1.00703 1.48566 1.05336 1.35704 1.27222 1.21740 0.85792 0.99711 0.96126 1.78306 1.16817 1.10406 1.03904 1.21450 0.84973 0.79812 0.84050 1.90723 1.18705 1.62994 1.64047 0.91878 0.92993 0.95710 0.94381 0.94994 0.93396 0.93208 0.89663 0.90806 0.90298 0.90962 0.91816 0.83568 0.81182 0.91132 0.89926 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 10.11 37.16 0.38 -3.49 16 2 C 0.14 3.35 5.60 -4.04 -0.02 3.32 16 3 N -0.57 -14.19 2.16 -167.23 -0.36 -14.55 16 4 C -0.25 -6.63 8.73 -15.06 -0.13 -6.76 16 5 H 0.07 1.79 7.91 -52.49 -0.42 1.38 16 6 C 0.01 0.21 4.70 -17.43 -0.08 0.13 16 7 N -0.89 -25.28 11.07 55.49 0.61 -24.66 16 8 Si 0.90 21.01 29.60 -169.99 -5.03 15.97 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.17 4.02 2.52 -69.30 -0.17 3.84 16 13 H 0.13 3.64 5.59 -51.92 -0.29 3.35 16 14 C -0.13 -2.62 5.50 -26.52 -0.15 -2.77 16 15 C -0.13 -2.05 6.00 -26.59 -0.16 -2.21 16 16 C 0.12 1.78 5.80 -4.48 -0.03 1.75 16 17 N -0.53 -10.06 2.98 -116.21 -0.35 -10.40 16 18 C 0.29 5.47 7.38 -154.39 -1.14 4.33 16 19 C -0.29 -4.09 9.82 -39.83 -0.39 -4.48 16 20 C 0.06 0.73 11.48 -17.24 -0.20 0.53 16 21 N -0.38 -5.61 4.01 -68.17 -0.27 -5.88 16 22 C 0.11 1.04 11.47 59.85 0.69 1.73 16 23 N -0.27 -5.32 10.46 31.44 0.33 -4.99 16 24 C 0.51 11.70 4.51 -11.87 -0.05 11.65 16 25 O -0.50 -13.07 13.34 5.54 0.07 -13.00 16 26 H 0.06 1.66 6.42 -51.93 -0.33 1.33 16 27 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.03 0.73 6.29 -51.93 -0.33 0.41 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 33 H 0.08 1.84 7.13 -51.93 -0.37 1.47 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.40 7.57 -51.93 -0.39 1.01 16 36 H 0.07 0.90 7.39 -51.93 -0.38 0.51 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.15 1.62 7.56 -52.48 -0.40 1.23 16 39 H 0.17 1.21 8.06 -52.48 -0.42 0.78 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 334.00 15.07 5.03 5.03 Total: -1.00 -34.34 334.00 -7.69 -42.03 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.27 Total: 2.88 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -1.46 Total: 7.56 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.04 Total: -60.49 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.07 Total: -13.00 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.34 -7.69 -42.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298094726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.880 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds