Wall clock time and date at job start Tue Mar 31 2020 03:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46929 * 2 1 4 4 C 1.50697 * 109.47559 * 239.99212 * 2 1 3 5 5 O 1.21277 * 120.00420 * 268.53569 * 4 2 1 6 6 N 1.34780 * 119.99415 * 88.53000 * 4 2 1 7 7 C 1.46492 * 120.00400 * 354.79305 * 6 4 2 8 8 C 1.46502 * 119.99585 * 174.78558 * 6 4 2 9 9 C 1.50705 * 109.46920 * 90.00423 * 8 6 4 10 10 H 1.07997 * 119.99677 * 359.97438 * 9 8 6 11 11 C 1.37881 * 119.99915 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99796 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99769 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47156 * 59.99979 * 13 11 9 15 15 H 1.48502 * 109.47108 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47684 * 299.99584 * 13 11 9 17 17 N 1.46902 * 109.47118 * 119.99147 * 2 1 3 18 18 C 1.46971 * 111.00179 * 177.00847 * 17 2 1 19 19 C 1.53411 * 109.65768 * 53.28900 * 18 17 2 20 20 N 1.46528 * 108.23443 * 49.66094 * 19 18 17 21 21 C 1.36041 * 128.67241 * 163.62836 * 20 19 18 22 22 C 1.34937 * 106.64438 * 180.15332 * 21 20 19 23 23 N 1.34365 * 108.09307 * 359.97167 * 22 21 20 24 24 C 1.29890 * 109.19637 * 359.94818 * 23 22 21 25 25 C 1.47326 * 111.00236 * 301.20233 * 17 2 1 26 26 H 1.08994 * 109.47422 * 307.27445 * 1 2 3 27 27 H 1.09002 * 109.46670 * 67.28149 * 1 2 3 28 28 H 1.09005 * 109.46581 * 187.27742 * 1 2 3 29 29 H 1.08994 * 109.47847 * 90.00943 * 7 6 4 30 30 H 1.08999 * 109.47134 * 210.00771 * 7 6 4 31 31 H 1.09003 * 109.47118 * 329.99983 * 7 6 4 32 32 H 1.08999 * 109.47272 * 210.00268 * 8 6 4 33 33 H 1.08998 * 109.47450 * 330.00587 * 8 6 4 34 34 H 0.96999 * 119.99522 * 180.02562 * 12 11 9 35 35 H 1.09004 * 109.44185 * 173.34531 * 18 17 2 36 36 H 1.09004 * 109.44073 * 293.27483 * 18 17 2 37 37 H 1.09003 * 109.71163 * 169.34486 * 19 18 17 38 38 H 1.08995 * 109.71069 * 289.93348 * 19 18 17 39 39 H 1.08004 * 126.67368 * 0.12911 * 21 20 19 40 40 H 1.07995 * 125.94936 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.73810 * 45.75187 * 25 17 2 42 42 H 1.08994 * 109.74140 * 166.46606 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 8 2.2600 -1.9012 -1.1926 6 7 2.2289 -0.0227 -2.3726 7 6 1.8470 1.3893 -2.4524 8 6 2.8244 -0.6873 -3.5345 9 6 1.7339 -1.2907 -4.3817 10 1 0.7006 -1.1896 -4.0842 11 6 2.0553 -1.9726 -5.5362 12 7 3.3136 -2.0961 -5.8982 13 14 0.7036 -2.7211 -6.5859 14 1 -0.2161 -1.6499 -7.0463 15 1 1.3072 -3.3946 -7.7637 16 1 -0.0549 -3.7134 -5.7826 17 7 2.0197 -0.6923 1.1996 18 6 3.4871 -0.7743 1.1983 19 6 4.0821 0.6262 1.0029 20 7 3.4384 1.5348 1.9554 21 6 3.8405 2.7714 2.3553 22 6 2.9233 3.2075 3.2438 23 7 1.9858 2.2543 3.3776 24 6 2.2848 1.2504 2.6096 25 6 1.5239 -0.0410 2.4245 26 1 -0.3634 0.6223 0.8177 27 1 -0.3633 0.3969 -0.9480 28 1 -0.3633 -1.0195 0.1302 29 1 2.6888 2.0112 -2.1478 30 1 1.5677 1.6328 -3.4774 31 1 1.0004 1.5746 -1.7914 32 1 3.3813 0.0412 -4.1239 33 1 3.4994 -1.4738 -3.1969 34 1 3.5397 -2.5755 -6.7105 35 1 3.8284 -1.1840 2.1490 36 1 3.8136 -1.4231 0.3855 37 1 5.1557 0.5988 1.1890 38 1 3.8941 0.9667 -0.0153 39 1 4.7224 3.3007 2.0260 40 1 2.9400 4.1572 3.7576 41 1 0.4593 0.1701 2.3241 42 1 1.6914 -0.6930 3.2817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330777828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:44 Heat of formation + Delta-G solvation = 55.232786 kcal Electronic energy + Delta-G solvation = -24657.122471 eV Core-core repulsion = 21253.228424 eV Total energy + Delta-G solvation = -3403.894047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.56718 -39.79458 -37.46417 -34.88669 -34.16154 -32.74391 -31.52961 -30.14935 -28.84595 -27.76609 -26.14921 -25.49109 -23.89946 -23.28678 -21.78250 -21.42476 -19.35749 -18.02275 -17.32168 -16.85596 -16.62946 -16.22856 -15.89866 -15.12004 -14.94315 -14.49405 -14.27999 -14.03427 -13.94870 -13.72734 -13.33652 -13.00796 -12.73110 -12.49613 -12.31947 -12.25152 -12.11015 -11.86570 -11.54117 -11.36626 -11.29775 -11.18046 -10.92373 -10.61953 -10.19720 -10.11716 -9.72762 -9.69691 -9.00731 -8.54816 -8.47638 -8.46602 -7.74427 -6.08962 -4.13587 1.92220 2.56475 3.02565 3.20535 3.29843 3.34264 3.37037 3.48802 3.98793 4.15909 4.38208 4.42466 4.62283 4.67782 4.85926 4.91308 5.12190 5.15467 5.20864 5.26228 5.29512 5.41280 5.46302 5.51598 5.62438 5.69541 5.76340 5.78288 5.85387 6.08325 6.16303 6.26653 6.58653 6.66821 6.75312 6.98516 7.00776 7.32261 7.44905 7.87013 7.98988 8.17278 8.29800 8.84056 9.00086 9.51777 10.99173 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029677 B = 0.004115 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.280744 B = 6803.196854 C = 6953.789941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 H 0.058 0.942 4 C 0.508 3.492 5 O -0.517 6.517 6 N -0.603 5.603 7 C 0.081 3.919 8 C 0.248 3.752 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.275 1.275 17 N -0.503 5.503 18 C 0.037 3.963 19 C 0.062 3.938 20 N -0.454 5.454 21 C -0.050 4.050 22 C -0.037 4.037 23 N -0.484 5.484 24 C 0.171 3.829 25 C 0.135 3.865 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.173 0.827 40 H 0.169 0.831 41 H 0.112 0.888 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 9.595 14.980 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.054 4.054 3 H 0.076 0.924 4 C 0.293 3.707 5 O -0.392 6.392 6 N -0.336 5.336 7 C -0.064 4.064 8 C 0.129 3.871 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.140 4.140 12 N -0.535 5.535 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.225 5.225 18 C -0.091 4.091 19 C -0.062 4.062 20 N -0.137 5.137 21 C -0.184 4.184 22 C -0.185 4.185 23 N -0.203 5.203 24 C -0.093 4.093 25 C 0.006 3.994 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.190 0.810 40 H 0.186 0.814 41 H 0.129 0.871 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.040 8.329 15.190 17.324 hybrid contribution 0.556 0.760 -1.279 1.588 sum 0.596 9.089 13.911 16.628 Atomic orbital electron populations 1.21830 0.91857 1.03889 1.02489 1.21827 0.97847 0.95920 0.89834 0.92418 1.19991 0.79265 0.87604 0.83845 1.90685 1.50245 1.14170 1.84132 1.48207 1.61258 1.10445 1.13684 1.21684 0.98666 0.82716 1.03291 1.19284 0.93876 0.92895 0.81029 1.21373 0.93396 1.34869 1.06861 0.92477 1.24925 0.95641 0.95895 0.97555 1.69914 1.16604 1.42253 1.24721 0.86556 0.81825 0.79499 0.79549 1.20258 1.21168 1.20088 1.62182 1.09000 1.50618 1.00682 1.22739 0.87052 0.93686 1.05666 1.22808 0.99190 0.91388 0.92812 1.45433 1.20304 1.14489 1.33481 1.22571 1.03897 0.87889 1.04022 1.22388 0.93542 1.00232 1.02342 1.69979 1.27416 1.00908 1.21948 1.24381 0.89107 0.99698 0.96112 1.21130 0.99105 0.85958 0.93239 0.91681 0.91156 0.90380 0.94219 0.90386 0.92438 0.95034 0.94001 0.92639 0.89231 0.86376 0.88442 0.89300 0.80967 0.81389 0.87055 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.45 37.16 0.31 -1.60 16 2 C 0.06 0.85 0.94 -68.86 -0.06 0.78 16 3 H 0.06 0.82 4.79 -51.93 -0.25 0.57 16 4 C 0.51 9.91 5.58 -10.99 -0.06 9.85 16 5 O -0.52 -12.27 14.97 5.56 0.08 -12.19 16 6 N -0.60 -12.13 2.86 -182.96 -0.52 -12.65 16 7 C 0.08 1.25 9.76 59.84 0.58 1.84 16 8 C 0.25 6.23 5.12 -5.19 -0.03 6.20 16 9 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 13 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 17 N -0.50 -6.87 4.57 -228.58 -1.05 -7.92 16 18 C 0.04 0.47 5.43 -3.57 -0.02 0.45 16 19 C 0.06 0.70 6.27 -3.81 -0.02 0.67 16 20 N -0.45 -5.46 2.87 -113.69 -0.33 -5.78 16 21 C -0.05 -0.55 11.68 -16.86 -0.20 -0.74 16 22 C -0.04 -0.44 11.88 -17.62 -0.21 -0.65 16 23 N -0.48 -6.82 11.24 -10.58 -0.12 -6.94 16 24 C 0.17 2.24 7.09 -155.22 -1.10 1.14 16 25 C 0.14 1.59 6.03 -4.59 -0.03 1.56 16 26 H 0.06 0.72 6.50 -51.93 -0.34 0.39 16 27 H 0.07 0.95 6.95 -51.93 -0.36 0.59 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 31 H 0.06 0.77 5.41 -51.93 -0.28 0.49 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 36 H 0.12 1.78 6.39 -51.93 -0.33 1.45 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.10 6.81 -51.93 -0.35 0.75 16 39 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.11 1.22 5.81 -51.93 -0.30 0.92 16 42 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 332.92 15.07 5.02 5.02 Total: -1.00 -33.50 332.92 -8.40 -41.90 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.94 Total: 1.12 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.25 Total: 6.22 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -1.28 Total: -58.65 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.50 -8.40 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330777828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.130 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds