Wall clock time and date at job start Tue Mar 31 2020 03:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46929 * 2 1 4 4 C 1.50697 * 109.47559 * 239.99212 * 2 1 3 5 5 O 1.21277 * 120.00420 * 268.53569 * 4 2 1 6 6 N 1.34780 * 119.99415 * 88.53000 * 4 2 1 7 7 C 1.46492 * 120.00400 * 354.79305 * 6 4 2 8 8 C 1.46502 * 119.99585 * 174.78558 * 6 4 2 9 9 C 1.50705 * 109.46920 * 90.00423 * 8 6 4 10 10 H 1.07997 * 119.99677 * 359.97438 * 9 8 6 11 11 C 1.37881 * 119.99915 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99796 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99769 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47156 * 59.99979 * 13 11 9 15 15 H 1.48502 * 109.47108 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47684 * 299.99584 * 13 11 9 17 17 N 1.46902 * 109.47118 * 119.99147 * 2 1 3 18 18 C 1.46971 * 111.00179 * 177.00847 * 17 2 1 19 19 C 1.53411 * 109.65768 * 53.28900 * 18 17 2 20 20 N 1.46528 * 108.23443 * 49.66094 * 19 18 17 21 21 C 1.36041 * 128.67241 * 163.62836 * 20 19 18 22 22 C 1.34937 * 106.64438 * 180.15332 * 21 20 19 23 23 N 1.34365 * 108.09307 * 359.97167 * 22 21 20 24 24 C 1.29890 * 109.19637 * 359.94818 * 23 22 21 25 25 C 1.47326 * 111.00236 * 301.20233 * 17 2 1 26 26 H 1.08994 * 109.47422 * 307.27445 * 1 2 3 27 27 H 1.09002 * 109.46670 * 67.28149 * 1 2 3 28 28 H 1.09005 * 109.46581 * 187.27742 * 1 2 3 29 29 H 1.08994 * 109.47847 * 90.00943 * 7 6 4 30 30 H 1.08999 * 109.47134 * 210.00771 * 7 6 4 31 31 H 1.09003 * 109.47118 * 329.99983 * 7 6 4 32 32 H 1.08999 * 109.47272 * 210.00268 * 8 6 4 33 33 H 1.08998 * 109.47450 * 330.00587 * 8 6 4 34 34 H 0.96999 * 119.99522 * 180.02562 * 12 11 9 35 35 H 1.09004 * 109.44185 * 173.34531 * 18 17 2 36 36 H 1.09004 * 109.44073 * 293.27483 * 18 17 2 37 37 H 1.09003 * 109.71163 * 169.34486 * 19 18 17 38 38 H 1.08995 * 109.71069 * 289.93348 * 19 18 17 39 39 H 1.08004 * 126.67368 * 0.12911 * 21 20 19 40 40 H 1.07995 * 125.94936 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.73810 * 45.75187 * 25 17 2 42 42 H 1.08994 * 109.74140 * 166.46606 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 8 2.2600 -1.9012 -1.1926 6 7 2.2289 -0.0227 -2.3726 7 6 1.8470 1.3893 -2.4524 8 6 2.8244 -0.6873 -3.5345 9 6 1.7339 -1.2907 -4.3817 10 1 0.7006 -1.1896 -4.0842 11 6 2.0553 -1.9726 -5.5362 12 7 3.3136 -2.0961 -5.8982 13 14 0.7036 -2.7211 -6.5859 14 1 -0.2161 -1.6499 -7.0463 15 1 1.3072 -3.3946 -7.7637 16 1 -0.0549 -3.7134 -5.7826 17 7 2.0197 -0.6923 1.1996 18 6 3.4871 -0.7743 1.1983 19 6 4.0821 0.6262 1.0029 20 7 3.4384 1.5348 1.9554 21 6 3.8405 2.7714 2.3553 22 6 2.9233 3.2075 3.2438 23 7 1.9858 2.2543 3.3776 24 6 2.2848 1.2504 2.6096 25 6 1.5239 -0.0410 2.4245 26 1 -0.3634 0.6223 0.8177 27 1 -0.3633 0.3969 -0.9480 28 1 -0.3633 -1.0195 0.1302 29 1 2.6888 2.0112 -2.1478 30 1 1.5677 1.6328 -3.4774 31 1 1.0004 1.5746 -1.7914 32 1 3.3813 0.0412 -4.1239 33 1 3.4994 -1.4738 -3.1969 34 1 3.5397 -2.5755 -6.7105 35 1 3.8284 -1.1840 2.1490 36 1 3.8136 -1.4231 0.3855 37 1 5.1557 0.5988 1.1890 38 1 3.8941 0.9667 -0.0153 39 1 4.7224 3.3007 2.0260 40 1 2.9400 4.1572 3.7576 41 1 0.4593 0.1701 2.3241 42 1 1.6914 -0.6930 3.2817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330777828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:43 Heat of formation + Delta-G solvation = 32.020180 kcal Electronic energy + Delta-G solvation = -24658.129045 eV Core-core repulsion = 21253.228424 eV Total energy + Delta-G solvation = -3404.900621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.48435 -41.17414 -38.71521 -36.59076 -35.17178 -34.72356 -32.72848 -31.08249 -30.05537 -29.37734 -27.53843 -26.64550 -25.38879 -24.55150 -23.08505 -22.32975 -20.59737 -19.27850 -18.68343 -18.29863 -18.17764 -17.35912 -17.16047 -16.63371 -16.31317 -15.80936 -15.69247 -15.19269 -14.94497 -14.81777 -14.49052 -14.18715 -14.13768 -13.81367 -13.60264 -13.55792 -13.34883 -13.25380 -13.12342 -12.78944 -12.69393 -12.52117 -12.44440 -12.28402 -12.19183 -11.72931 -11.05028 -10.65685 -10.64065 -10.52945 -9.66208 -9.46025 -9.32922 -8.22776 -6.36651 1.05085 1.37055 1.40839 1.47845 1.66577 1.72382 2.11276 2.13996 2.39972 2.76724 3.07402 3.24187 3.41177 3.56923 3.70709 3.82770 3.91451 4.03636 4.14309 4.23346 4.27960 4.48901 4.52052 4.56878 4.57986 4.62297 4.70771 4.74423 4.83447 4.86940 4.98931 5.17324 5.19858 5.29609 5.53114 5.62679 5.68655 5.81771 5.86828 6.05718 6.11023 6.67835 6.74338 7.09549 7.27901 7.44815 8.83950 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029677 B = 0.004115 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.280744 B = 6803.196854 C = 6953.789941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 H 0.070 0.930 4 C 0.506 3.494 5 O -0.568 6.568 6 N -0.609 5.609 7 C 0.078 3.922 8 C 0.264 3.736 9 C -0.542 4.542 10 H 0.051 0.949 11 C 0.011 3.989 12 N -0.927 5.927 13 Si 0.963 3.037 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.278 1.278 17 N -0.516 5.516 18 C 0.038 3.962 19 C 0.070 3.930 20 N -0.457 5.457 21 C -0.044 4.044 22 C -0.054 4.054 23 N -0.509 5.509 24 C 0.157 3.843 25 C 0.141 3.859 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.024 0.976 33 H 0.001 0.999 34 H 0.267 0.733 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.203 0.797 40 H 0.189 0.811 41 H 0.120 0.880 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 11.186 15.864 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 H 0.087 0.913 4 C 0.293 3.707 5 O -0.447 6.447 6 N -0.341 5.341 7 C -0.065 4.065 8 C 0.143 3.857 9 C -0.581 4.581 10 H 0.069 0.931 11 C -0.188 4.188 12 N -0.567 5.567 13 Si 0.788 3.212 14 H -0.186 1.186 15 H -0.204 1.204 16 H -0.204 1.204 17 N -0.239 5.239 18 C -0.090 4.090 19 C -0.054 4.054 20 N -0.140 5.140 21 C -0.178 4.178 22 C -0.201 4.201 23 N -0.229 5.229 24 C -0.107 4.107 25 C 0.011 3.989 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.042 0.958 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.220 0.780 40 H 0.206 0.794 41 H 0.138 0.862 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.750 9.973 16.093 18.947 hybrid contribution 0.854 0.291 -1.496 1.747 sum 0.103 10.264 14.597 17.845 Atomic orbital electron populations 1.21856 0.90532 1.03852 1.03630 1.21631 0.98589 0.95499 0.87910 0.91265 1.20817 0.77899 0.87155 0.84784 1.90654 1.52293 1.16658 1.85058 1.48174 1.61043 1.12245 1.12628 1.21910 1.00659 0.80128 1.03795 1.18740 0.92862 0.91836 0.82273 1.21662 0.93606 1.35316 1.07507 0.93054 1.25788 0.97937 0.96233 0.98876 1.70025 1.18463 1.42923 1.25279 0.85537 0.79072 0.78822 0.77820 1.18615 1.20358 1.20390 1.62146 1.09697 1.51108 1.00919 1.22640 0.86753 0.94301 1.05329 1.22710 1.00384 0.90230 0.92092 1.45509 1.20156 1.14942 1.33395 1.23096 1.04374 0.87246 1.03047 1.22848 0.93465 1.00828 1.02995 1.69955 1.28550 1.01715 1.22678 1.24498 0.89672 0.99928 0.96589 1.21186 0.99336 0.85835 0.92494 0.88806 0.91225 0.91539 0.91658 0.90959 0.89902 0.95767 0.98064 0.92411 0.87540 0.89418 0.86079 0.90498 0.78010 0.79379 0.86207 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.45 71.98 0.61 -2.92 16 2 C 0.08 2.14 0.94 44.17 0.04 2.18 16 3 H 0.07 1.83 4.79 -2.39 -0.01 1.81 16 4 C 0.51 20.01 5.58 87.66 0.49 20.50 16 5 O -0.57 -28.09 14.97 -3.02 -0.05 -28.14 16 6 N -0.61 -24.73 2.86 -851.15 -2.43 -27.17 16 7 C 0.08 2.30 9.76 127.77 1.25 3.55 16 8 C 0.26 13.74 5.12 85.63 0.44 14.18 16 9 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 10 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 11 C 0.01 0.61 5.46 84.66 0.46 1.08 16 12 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 13 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 14 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 17 N -0.52 -13.60 4.57 -877.11 -4.01 -17.62 16 18 C 0.04 0.94 5.43 86.43 0.47 1.41 16 19 C 0.07 1.45 6.27 86.51 0.54 1.99 16 20 N -0.46 -9.83 2.87 -513.59 -1.48 -11.30 16 21 C -0.04 -0.83 11.68 83.28 0.97 0.14 16 22 C -0.05 -1.15 11.88 83.55 0.99 -0.15 16 23 N -0.51 -13.22 11.24 -187.39 -2.11 -15.32 16 24 C 0.16 3.75 7.09 138.22 0.98 4.73 16 25 C 0.14 3.02 6.03 85.58 0.52 3.53 16 26 H 0.09 1.82 6.50 -2.39 -0.02 1.80 16 27 H 0.07 1.74 6.95 -2.39 -0.02 1.73 16 28 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.08 2.03 5.41 -2.39 -0.01 2.02 16 32 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 33 H 0.00 0.08 7.50 -2.39 -0.02 0.06 16 34 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.11 2.21 8.07 -2.39 -0.02 2.20 16 36 H 0.09 2.75 6.39 -2.38 -0.02 2.73 16 37 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.08 1.80 6.81 -2.39 -0.02 1.79 16 39 H 0.20 2.38 8.06 -2.91 -0.02 2.35 16 40 H 0.19 2.95 8.06 -2.91 -0.02 2.92 16 41 H 0.12 2.33 5.81 -2.39 -0.01 2.32 16 42 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -74.17 332.92 1.27 -72.90 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 1.03 Total: 15.21 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 8.00 Total: 19.75 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -9.74 Total: -126.20 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.05 Total: -28.14 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -74.17 1.27 -72.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330777828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.920 kcal (2) G-P(sol) polarization free energy of solvation -74.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds