Wall clock time and date at job start Tue Mar 31 2020 03:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.36606 * 2 1 4 4 C 1.54375 * 110.32103 * 237.82056 * 2 1 3 5 5 N 1.48570 * 104.59103 * 264.95221 * 4 2 1 6 6 C 1.46907 * 110.99787 * 200.96133 * 5 4 2 7 7 C 1.48714 * 104.28802 * 320.57384 * 5 4 2 8 8 C 1.54259 * 110.32297 * 122.17964 * 2 1 3 9 9 H 1.08996 * 110.32457 * 359.90001 * 8 2 1 10 10 C 1.50702 * 110.32325 * 237.79062 * 8 2 1 11 11 O 1.21593 * 120.00063 * 1.43099 * 10 8 2 12 12 N 1.32907 * 119.99593 * 181.15579 * 10 8 2 13 13 C 1.33314 * 119.99567 * 180.27676 * 12 10 8 14 14 C 1.40982 * 126.35610 * 359.69072 * 13 12 10 15 15 C 1.35124 * 108.23810 * 179.82608 * 14 13 12 16 16 N 1.36342 * 108.89872 * 0.43399 * 15 14 13 17 17 C 1.46492 * 125.86450 * 179.72368 * 16 15 14 18 18 C 1.50707 * 109.47295 * 275.00255 * 17 16 15 19 19 H 1.07996 * 119.99763 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99743 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00803 * 359.97438 * 20 18 17 22 22 Si 1.86811 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47232 * 89.99520 * 22 20 18 24 24 H 1.48502 * 109.46859 * 209.99930 * 22 20 18 25 25 H 1.48496 * 109.46581 * 329.99719 * 22 20 18 26 26 N 1.37277 * 126.35564 * 179.97438 * 13 12 10 27 27 H 0.97005 * 126.34945 * 0.02562 * 26 13 12 28 28 H 1.08998 * 109.46883 * 297.81958 * 1 2 3 29 29 H 1.08995 * 109.47231 * 57.82292 * 1 2 3 30 30 H 1.09002 * 109.47221 * 177.82107 * 1 2 3 31 31 H 1.08993 * 110.41810 * 23.73445 * 4 2 1 32 32 H 1.09003 * 110.41133 * 146.17747 * 4 2 1 33 33 H 1.08996 * 109.46725 * 60.00143 * 6 5 4 34 34 H 1.08997 * 109.46691 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.46878 * 300.00389 * 6 5 4 36 36 H 1.09001 * 110.39317 * 280.63814 * 7 5 4 37 37 H 1.09007 * 110.50694 * 158.14779 * 7 5 4 38 38 H 1.08001 * 125.88134 * 359.97438 * 14 13 12 39 39 H 1.07995 * 125.55255 * 180.16349 * 15 14 13 40 40 H 1.09003 * 109.47548 * 35.00366 * 17 16 15 41 41 H 1.08995 * 109.47128 * 155.00363 * 17 16 15 42 42 H 0.96998 * 120.00532 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0661 -0.7710 -1.2253 5 7 2.3148 -2.1467 -0.7224 6 6 3.2650 -2.8595 -1.5868 7 6 2.8801 -1.9436 0.6380 8 6 2.0658 -0.7704 1.2243 9 1 1.2388 -1.1470 1.8262 10 6 2.9539 0.1196 2.0552 11 8 3.1313 1.2772 1.7283 12 7 3.5390 -0.3595 3.1482 13 6 4.3203 0.4293 3.8862 14 6 4.6219 1.7825 3.6302 15 6 5.4410 2.2257 4.6092 16 7 5.6836 1.2037 5.4784 17 6 6.5292 1.2750 6.6725 18 6 7.9651 1.0290 6.2866 19 1 8.2220 0.8381 5.2552 20 6 8.9506 1.0465 7.2507 21 7 8.6379 1.2784 8.5068 22 14 10.7306 0.7422 6.7723 23 1 11.3812 2.0345 6.4376 24 1 11.4466 0.1069 7.9077 25 1 10.7789 -0.1568 5.5914 26 7 4.9847 0.0732 5.0334 27 1 4.9731 -0.7992 5.4573 28 1 -0.3633 0.4796 0.9089 29 1 -0.3633 0.5472 -0.8698 30 1 -0.3634 -1.0269 -0.0391 31 1 1.3213 -0.7859 -2.0209 32 1 2.9940 -0.3226 -1.5804 33 1 4.2114 -2.3192 -1.6093 34 1 3.4286 -3.8638 -1.1962 35 1 2.8595 -2.9243 -2.5965 36 1 3.9358 -1.6797 0.5750 37 1 2.7469 -2.8395 1.2446 38 1 4.2587 2.3653 2.7966 39 1 5.8421 3.2253 4.6877 40 1 6.4385 2.2632 7.1236 41 1 6.2107 0.5180 7.3890 42 1 9.3313 1.2911 9.1850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342642329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:14 Heat of formation + Delta-G solvation = 66.714628 kcal Electronic energy + Delta-G solvation = -23036.576747 eV Core-core repulsion = 19633.180590 eV Total energy + Delta-G solvation = -3403.396157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93577 -39.64981 -37.64036 -34.33453 -33.23221 -32.87170 -31.14980 -30.96509 -29.71939 -26.99695 -26.69892 -25.03759 -23.36405 -22.10905 -21.38373 -21.16403 -19.98066 -18.70375 -17.17752 -16.84338 -16.05164 -15.75342 -15.31035 -15.06096 -14.91516 -14.42410 -14.23350 -14.09393 -13.58146 -13.33516 -13.10349 -12.90109 -12.75572 -12.60034 -12.48079 -12.14576 -11.97327 -11.43441 -11.40813 -11.21563 -11.10140 -10.73166 -10.59344 -10.57209 -10.46961 -10.41960 -9.63663 -9.32275 -9.09678 -8.96898 -8.54323 -8.31542 -7.04119 -6.55395 -4.71329 1.58821 2.00151 2.92835 3.02318 3.10562 3.14468 3.98480 4.03845 4.23623 4.27744 4.71407 4.75705 4.79649 4.92041 5.17990 5.21975 5.30967 5.41582 5.52361 5.55829 5.66540 5.76055 5.78371 5.78857 5.90590 5.94256 5.99385 6.11046 6.20863 6.28118 6.43598 6.44572 6.48796 6.52663 6.69346 6.87865 7.00687 7.31852 7.40741 7.45682 7.55884 7.90311 8.27840 8.37919 8.99735 9.33865 10.47501 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025711 B = 0.003056 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.761450 B = 9161.188264 C = 9775.072894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 H 0.099 0.901 4 C 0.037 3.963 5 N -0.518 5.518 6 C 0.014 3.986 7 C 0.057 3.943 8 C -0.080 4.080 9 H 0.097 0.903 10 C 0.499 3.501 11 O -0.586 6.586 12 N -0.699 5.699 13 C 0.468 3.532 14 C -0.333 4.333 15 C 0.163 3.837 16 N -0.339 5.339 17 C 0.253 3.747 18 C -0.560 4.560 19 H 0.070 0.930 20 C 0.071 3.929 21 N -0.886 5.886 22 Si 0.910 3.090 23 H -0.274 1.274 24 H -0.281 1.281 25 H -0.271 1.271 26 N -0.465 5.465 27 H 0.446 0.554 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.184 0.816 39 H 0.189 0.811 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 -2.612 -10.856 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.117 0.883 4 C -0.091 4.091 5 N -0.242 5.242 6 C -0.135 4.135 7 C -0.071 4.071 8 C -0.102 4.102 9 H 0.115 0.885 10 C 0.284 3.716 11 O -0.468 6.468 12 N -0.463 5.463 13 C 0.219 3.781 14 C -0.365 4.365 15 C 0.016 3.984 16 N -0.123 5.123 17 C 0.137 3.863 18 C -0.598 4.598 19 H 0.088 0.912 20 C -0.135 4.135 21 N -0.522 5.522 22 Si 0.736 3.264 23 H -0.200 1.200 24 H -0.207 1.207 25 H -0.195 1.195 26 N -0.187 5.187 27 H 0.293 0.707 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.201 0.799 39 H 0.206 0.794 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.520 -3.253 -10.316 14.409 hybrid contribution 2.012 0.395 -0.033 2.050 sum -7.508 -2.858 -10.350 13.102 Atomic orbital electron populations 1.21767 0.94523 1.01732 1.01236 1.21945 0.96044 1.00819 0.92573 0.88298 1.23198 0.99800 0.88500 0.97633 1.65432 1.40682 1.15502 1.02601 1.22488 0.94176 0.99191 0.97678 1.22925 0.96617 0.98030 0.89569 1.21631 0.97973 0.94926 0.95699 0.88487 1.20600 0.81077 0.86310 0.83578 1.90495 1.62802 1.20319 1.73194 1.68774 1.26221 1.36702 1.14648 1.19278 0.85771 0.89974 0.83085 1.22473 1.11303 0.96561 1.06184 1.22903 0.93830 0.93277 0.88342 1.48084 1.39281 1.00249 1.24728 1.20104 0.87860 1.00665 0.77695 1.21394 0.90333 1.52457 0.95610 0.91205 1.24954 1.00138 0.93857 0.94506 1.69892 1.34778 1.46884 1.00695 0.86282 0.82710 0.78907 0.78457 1.19984 1.20680 1.19533 1.44603 1.42415 1.07685 1.23970 0.70717 0.92839 0.92992 0.92289 0.90277 0.94003 0.95445 0.91327 0.91546 0.93702 0.89526 0.79945 0.79425 0.91269 0.92961 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.90 37.16 0.33 -1.22 16 2 C -0.09 -1.30 3.24 -89.24 -0.29 -1.59 16 3 H 0.10 1.56 6.46 -51.93 -0.34 1.23 16 4 C 0.04 0.46 6.04 -2.18 -0.01 0.44 16 5 N -0.52 -6.65 5.66 -238.08 -1.35 -8.00 16 6 C 0.01 0.15 9.53 60.07 0.57 0.72 16 7 C 0.06 0.81 6.01 -2.09 -0.01 0.80 16 8 C -0.08 -1.24 3.17 -90.39 -0.29 -1.52 16 9 H 0.10 1.44 7.71 -51.93 -0.40 1.04 16 10 C 0.50 9.44 6.90 -11.81 -0.08 9.36 16 11 O -0.59 -12.12 12.16 5.28 0.06 -12.05 16 12 N -0.70 -13.51 10.46 -11.59 -0.12 -13.63 16 13 C 0.47 8.91 8.07 -155.18 -1.25 7.66 16 14 C -0.33 -6.07 9.51 -39.65 -0.38 -6.45 16 15 C 0.16 2.68 11.46 -16.65 -0.19 2.49 16 16 N -0.34 -6.14 3.63 -62.23 -0.23 -6.36 16 17 C 0.25 5.16 6.19 -5.19 -0.03 5.13 16 18 C -0.56 -13.11 9.39 -34.44 -0.32 -13.43 16 19 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -22.23 13.29 55.43 0.74 -21.49 16 22 Si 0.91 19.04 29.54 -169.99 -5.02 14.01 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 N -0.46 -8.14 7.37 31.32 0.23 -7.91 16 27 H 0.45 6.87 8.96 -182.55 -1.64 5.24 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 32 H 0.04 0.54 7.97 -51.93 -0.41 0.13 16 33 H 0.03 0.30 7.98 -51.93 -0.41 -0.11 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.71 7.62 -51.93 -0.40 0.32 16 37 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 38 H 0.18 3.48 5.77 -52.49 -0.30 3.18 16 39 H 0.19 2.42 8.06 -52.49 -0.42 1.99 16 40 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -27.78 346.93 -10.16 -37.94 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.66 Total: 8.28 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -2.05 Total: 3.98 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.73 Total: -57.40 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.06 Total: -12.05 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.78 -10.16 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342642329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.659 kcal (2) G-P(sol) polarization free energy of solvation -27.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds