Wall clock time and date at job start Tue Mar 31 2020 03:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.36606 * 2 1 4 4 C 1.54375 * 110.32103 * 237.82056 * 2 1 3 5 5 N 1.48570 * 104.59103 * 264.95221 * 4 2 1 6 6 C 1.46907 * 110.99787 * 200.96133 * 5 4 2 7 7 C 1.48714 * 104.28802 * 320.57384 * 5 4 2 8 8 C 1.54259 * 110.32297 * 122.17964 * 2 1 3 9 9 H 1.08996 * 110.32457 * 359.90001 * 8 2 1 10 10 C 1.50702 * 110.32325 * 237.79062 * 8 2 1 11 11 O 1.21593 * 120.00063 * 1.43099 * 10 8 2 12 12 N 1.32907 * 119.99593 * 181.15579 * 10 8 2 13 13 C 1.33314 * 119.99567 * 180.27676 * 12 10 8 14 14 C 1.40982 * 126.35610 * 359.69072 * 13 12 10 15 15 C 1.35124 * 108.23810 * 179.82608 * 14 13 12 16 16 N 1.36342 * 108.89872 * 0.43399 * 15 14 13 17 17 C 1.46492 * 125.86450 * 179.72368 * 16 15 14 18 18 C 1.50707 * 109.47295 * 275.00255 * 17 16 15 19 19 H 1.07996 * 119.99763 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99743 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00803 * 359.97438 * 20 18 17 22 22 Si 1.86811 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47232 * 89.99520 * 22 20 18 24 24 H 1.48502 * 109.46859 * 209.99930 * 22 20 18 25 25 H 1.48496 * 109.46581 * 329.99719 * 22 20 18 26 26 N 1.37277 * 126.35564 * 179.97438 * 13 12 10 27 27 H 0.97005 * 126.34945 * 0.02562 * 26 13 12 28 28 H 1.08998 * 109.46883 * 297.81958 * 1 2 3 29 29 H 1.08995 * 109.47231 * 57.82292 * 1 2 3 30 30 H 1.09002 * 109.47221 * 177.82107 * 1 2 3 31 31 H 1.08993 * 110.41810 * 23.73445 * 4 2 1 32 32 H 1.09003 * 110.41133 * 146.17747 * 4 2 1 33 33 H 1.08996 * 109.46725 * 60.00143 * 6 5 4 34 34 H 1.08997 * 109.46691 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.46878 * 300.00389 * 6 5 4 36 36 H 1.09001 * 110.39317 * 280.63814 * 7 5 4 37 37 H 1.09007 * 110.50694 * 158.14779 * 7 5 4 38 38 H 1.08001 * 125.88134 * 359.97438 * 14 13 12 39 39 H 1.07995 * 125.55255 * 180.16349 * 15 14 13 40 40 H 1.09003 * 109.47548 * 35.00366 * 17 16 15 41 41 H 1.08995 * 109.47128 * 155.00363 * 17 16 15 42 42 H 0.96998 * 120.00532 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0661 -0.7710 -1.2253 5 7 2.3148 -2.1467 -0.7224 6 6 3.2650 -2.8595 -1.5868 7 6 2.8801 -1.9436 0.6380 8 6 2.0658 -0.7704 1.2243 9 1 1.2388 -1.1470 1.8262 10 6 2.9539 0.1196 2.0552 11 8 3.1313 1.2772 1.7283 12 7 3.5390 -0.3595 3.1482 13 6 4.3203 0.4293 3.8862 14 6 4.6219 1.7825 3.6302 15 6 5.4410 2.2257 4.6092 16 7 5.6836 1.2037 5.4784 17 6 6.5292 1.2750 6.6725 18 6 7.9651 1.0290 6.2866 19 1 8.2220 0.8381 5.2552 20 6 8.9506 1.0465 7.2507 21 7 8.6379 1.2784 8.5068 22 14 10.7306 0.7422 6.7723 23 1 11.3812 2.0345 6.4376 24 1 11.4466 0.1069 7.9077 25 1 10.7789 -0.1568 5.5914 26 7 4.9847 0.0732 5.0334 27 1 4.9731 -0.7992 5.4573 28 1 -0.3633 0.4796 0.9089 29 1 -0.3633 0.5472 -0.8698 30 1 -0.3634 -1.0269 -0.0391 31 1 1.3213 -0.7859 -2.0209 32 1 2.9940 -0.3226 -1.5804 33 1 4.2114 -2.3192 -1.6093 34 1 3.4286 -3.8638 -1.1962 35 1 2.8595 -2.9243 -2.5965 36 1 3.9358 -1.6797 0.5750 37 1 2.7469 -2.8395 1.2446 38 1 4.2587 2.3653 2.7966 39 1 5.8421 3.2253 4.6877 40 1 6.4385 2.2632 7.1236 41 1 6.2107 0.5180 7.3890 42 1 9.3313 1.2911 9.1850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342642329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:14 Heat of formation + Delta-G solvation = 48.502360 kcal Electronic energy + Delta-G solvation = -23037.366490 eV Core-core repulsion = 19633.180590 eV Total energy + Delta-G solvation = -3404.185900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.38542 -40.89505 -38.94137 -35.97277 -34.69442 -34.09638 -32.58456 -32.49037 -30.95245 -28.48022 -27.78610 -26.18891 -24.94570 -23.48793 -22.77639 -22.32326 -21.20053 -20.02149 -18.91433 -18.39393 -17.36354 -17.02468 -16.65307 -16.62088 -16.31073 -15.76338 -15.63201 -15.23296 -14.85285 -14.53303 -14.42568 -14.27726 -14.15433 -13.76185 -13.72663 -13.58024 -13.16991 -13.03392 -12.74997 -12.36803 -12.34963 -12.29700 -12.07876 -11.78426 -11.62864 -11.56452 -11.24371 -10.81571 -10.74105 -10.54653 -9.90457 -9.50595 -8.63501 -8.30253 -6.58665 0.14356 0.55010 1.37093 1.41147 1.48325 1.51255 2.28790 2.69700 2.82464 2.92770 3.06871 3.54355 3.66700 3.77700 3.87169 4.15940 4.26125 4.32539 4.44797 4.47622 4.51136 4.54098 4.67416 4.74703 4.82512 4.86289 4.90181 4.94918 4.96187 5.00891 5.11000 5.22082 5.23211 5.29501 5.46389 5.48870 5.67477 5.81317 5.95001 6.01850 6.08300 6.39797 6.59819 6.83175 7.15416 7.85842 8.64106 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025711 B = 0.003056 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.761450 B = 9161.188264 C = 9775.072894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 H 0.075 0.925 4 C 0.040 3.960 5 N -0.518 5.518 6 C 0.012 3.988 7 C 0.063 3.937 8 C -0.079 4.079 9 H 0.103 0.897 10 C 0.487 3.513 11 O -0.610 6.610 12 N -0.709 5.709 13 C 0.452 3.548 14 C -0.345 4.345 15 C 0.179 3.821 16 N -0.343 5.343 17 C 0.266 3.734 18 C -0.567 4.567 19 H 0.059 0.941 20 C 0.031 3.969 21 N -0.912 5.912 22 Si 0.963 3.037 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.275 1.275 26 N -0.461 5.461 27 H 0.453 0.547 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.033 0.967 33 H 0.020 0.980 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.023 0.977 37 H 0.092 0.908 38 H 0.175 0.825 39 H 0.226 0.774 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.431 -2.922 -11.765 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.088 4.088 5 N -0.241 5.241 6 C -0.137 4.137 7 C -0.065 4.065 8 C -0.101 4.101 9 H 0.121 0.879 10 C 0.274 3.726 11 O -0.494 6.494 12 N -0.473 5.473 13 C 0.203 3.797 14 C -0.377 4.377 15 C 0.033 3.967 16 N -0.128 5.128 17 C 0.149 3.851 18 C -0.605 4.605 19 H 0.077 0.923 20 C -0.171 4.171 21 N -0.550 5.550 22 Si 0.788 3.212 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.200 1.200 26 N -0.183 5.183 27 H 0.301 0.699 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.051 0.949 33 H 0.038 0.962 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.110 0.890 38 H 0.192 0.808 39 H 0.242 0.758 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.730 -3.577 -11.231 15.284 hybrid contribution 2.065 0.497 0.236 2.137 sum -7.665 -3.080 -10.995 13.752 Atomic orbital electron populations 1.21711 0.92563 1.02409 1.01836 1.21924 0.97636 0.99364 0.92409 0.90694 1.23215 0.99965 0.88065 0.97522 1.65468 1.40993 1.15613 1.02069 1.22576 0.93544 0.99183 0.98354 1.22823 0.95211 0.97679 0.90815 1.21673 0.97537 0.94941 0.95964 0.87924 1.21245 0.81195 0.86535 0.83644 1.90476 1.63776 1.21414 1.73743 1.68849 1.26525 1.36998 1.14966 1.19518 0.86100 0.90612 0.83480 1.22403 1.12239 0.96404 1.06671 1.23450 0.92344 0.94144 0.86737 1.47954 1.39312 1.00824 1.24673 1.19796 0.86758 1.00496 0.78054 1.21591 0.91918 1.51967 0.95056 0.92251 1.25585 1.03224 0.93803 0.94511 1.69953 1.35738 1.47942 1.01366 0.85458 0.79139 0.78729 0.77829 1.19426 1.20512 1.20004 1.44589 1.42114 1.07956 1.23659 0.69851 0.93389 0.91209 0.91569 0.88001 0.94900 0.96164 0.90434 0.89573 0.95827 0.88981 0.80809 0.75775 0.90845 0.93702 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.90 71.98 0.64 -2.09 16 2 C -0.09 -2.53 3.24 -9.90 -0.03 -2.56 16 3 H 0.07 2.40 6.46 -2.39 -0.02 2.39 16 4 C 0.04 0.95 6.04 86.45 0.52 1.47 16 5 N -0.52 -12.49 5.66 -907.15 -5.13 -17.62 16 6 C 0.01 0.24 9.53 127.69 1.22 1.45 16 7 C 0.06 1.78 6.01 86.42 0.52 2.30 16 8 C -0.08 -2.43 3.17 -10.64 -0.03 -2.47 16 9 H 0.10 3.00 7.71 -2.39 -0.02 2.98 16 10 C 0.49 18.75 6.90 87.95 0.61 19.36 16 11 O -0.61 -25.85 12.16 -4.01 -0.05 -25.90 16 12 N -0.71 -27.72 10.46 -309.87 -3.24 -30.96 16 13 C 0.45 17.26 8.07 133.82 1.08 18.34 16 14 C -0.35 -12.53 9.51 22.22 0.21 -12.32 16 15 C 0.18 5.66 11.46 83.27 0.95 6.61 16 16 N -0.34 -12.11 3.63 -350.81 -1.27 -13.39 16 17 C 0.27 10.62 6.19 85.64 0.53 11.15 16 18 C -0.57 -26.07 9.39 25.60 0.24 -25.83 16 19 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16 20 C 0.03 1.48 5.46 84.65 0.46 1.94 16 21 N -0.91 -45.16 13.29 21.45 0.28 -44.87 16 22 Si 0.96 38.34 29.54 68.60 2.03 40.36 16 23 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 24 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 26 N -0.46 -16.00 7.37 -54.81 -0.40 -16.40 16 27 H 0.45 13.91 8.96 -213.28 -1.91 11.99 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.95 7.86 -2.39 -0.02 1.93 16 32 H 0.03 0.83 7.97 -2.39 -0.02 0.81 16 33 H 0.02 0.43 7.98 -2.39 -0.02 0.41 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.02 0.76 7.62 -2.39 -0.02 0.74 16 37 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.17 6.72 5.77 -2.91 -0.02 6.70 16 39 H 0.23 5.21 8.06 -2.91 -0.02 5.18 16 40 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 Total: -1.00 -58.42 346.93 -1.76 -60.18 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -0.89 Total: 31.26 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 6.92 Total: 17.35 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -9.77 Total: -123.24 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.90 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.36 kcal Total: -58.42 -1.76 -60.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342642329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.682 kcal (2) G-P(sol) polarization free energy of solvation -58.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds