Wall clock time and date at job start Tue Mar 31 2020 03:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39989 * 126.03904 * 2 1 4 4 C 1.31087 * 108.42227 * 180.27013 * 3 2 1 5 5 C 1.39730 * 108.22210 * 359.76854 * 4 3 2 6 6 C 1.35194 * 126.03995 * 179.86281 * 2 1 3 7 7 N 1.39478 * 126.20763 * 0.02562 * 6 2 1 8 8 C 1.34776 * 120.00080 * 153.38157 * 7 6 2 9 9 O 1.21286 * 120.00195 * 354.64781 * 8 7 6 10 10 C 1.50701 * 120.00024 * 174.65254 * 8 7 6 11 11 H 1.09002 * 109.47120 * 319.99823 * 10 8 7 12 12 N 1.46902 * 109.47227 * 199.99417 * 10 8 7 13 13 C 1.53006 * 109.47228 * 79.99609 * 10 8 7 14 14 C 1.52998 * 109.47173 * 184.99775 * 13 10 8 15 15 C 1.50701 * 109.46741 * 180.02562 * 14 13 10 16 16 H 1.07996 * 120.00185 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99531 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00527 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00066 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46619 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47167 * 119.99662 * 19 17 15 22 22 H 1.48500 * 109.47081 * 240.00086 * 19 17 15 23 23 C 1.51271 * 109.59716 * 180.02562 * 5 4 3 24 24 C 1.54344 * 105.19980 * 17.21193 * 23 5 4 25 25 C 1.51343 * 142.27041 * 179.78049 * 4 3 2 26 26 H 1.09002 * 109.46510 * 264.98664 * 1 2 3 27 27 H 1.08995 * 109.47275 * 24.98956 * 1 2 3 28 28 H 1.09000 * 109.47166 * 144.99331 * 1 2 3 29 29 H 0.97006 * 119.99876 * 333.37533 * 7 6 2 30 30 H 1.00903 * 110.99894 * 176.04302 * 12 10 8 31 31 H 1.00899 * 111.00192 * 300.00345 * 12 10 8 32 32 H 1.09001 * 109.47106 * 305.00527 * 13 10 8 33 33 H 1.09002 * 109.46597 * 64.99834 * 13 10 8 34 34 H 1.08995 * 109.47275 * 299.99840 * 14 13 10 35 35 H 1.09004 * 109.46870 * 60.00225 * 14 13 10 36 36 H 0.97001 * 120.00406 * 179.97438 * 18 17 15 37 37 H 1.09002 * 110.29701 * 136.14653 * 23 5 4 38 38 H 1.08998 * 110.30015 * 258.28155 * 23 5 4 39 39 H 1.09007 * 110.76958 * 91.77992 * 24 23 5 40 40 H 1.08998 * 110.77592 * 215.00014 * 24 23 5 41 41 H 1.08997 * 110.29135 * 43.82678 * 25 4 3 42 42 H 1.08997 * 110.29536 * 281.69427 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2887 1.1320 0.0000 4 6 3.5380 0.7353 -0.0059 5 6 3.5528 -0.6620 -0.0044 6 6 2.2605 -1.0932 0.0026 7 7 1.8352 -2.4215 0.0053 8 6 2.6237 -3.3826 -0.5153 9 8 3.6582 -3.0824 -1.0728 10 6 2.2200 -4.8303 -0.4049 11 1 1.7920 -5.0140 0.5806 12 7 3.4008 -5.6837 -0.5928 13 6 1.1808 -5.1535 -1.4805 14 6 0.6791 -6.5864 -1.2908 15 6 -0.3438 -6.9048 -2.3506 16 1 -0.6099 -6.1596 -3.0856 17 6 -0.9409 -8.1472 -2.3811 18 7 -0.6174 -9.0546 -1.4857 19 14 -2.2085 -8.5423 -3.6951 20 1 -2.3931 -7.3610 -4.5757 21 1 -1.7393 -9.6953 -4.5048 22 1 -3.5011 -8.8844 -3.0491 23 6 4.9832 -1.1542 -0.0105 24 6 5.8308 0.0598 0.4251 25 6 4.9592 1.2557 -0.0134 26 1 -0.3632 -0.0898 1.0238 27 1 -0.3633 0.9314 -0.4341 28 1 -0.3633 -0.8417 -0.5895 29 1 0.9719 -2.6537 0.3820 30 1 3.1688 -6.6566 -0.4596 31 1 3.8161 -5.5319 -1.4998 32 1 0.3433 -4.4610 -1.3963 33 1 1.6357 -5.0553 -2.4662 34 1 1.5167 -7.2788 -1.3751 35 1 0.2243 -6.6846 -0.3050 36 1 -1.0377 -9.9285 -1.5070 37 1 5.1041 -1.9736 0.6982 38 1 5.2686 -1.4747 -1.0124 39 1 5.9758 0.0625 1.5055 40 1 6.7903 0.0670 -0.0921 41 1 5.0640 2.0788 0.6933 42 1 5.2379 1.5794 -1.0162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424140763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:07 Heat of formation + Delta-G solvation = 17.865960 kcal Electronic energy + Delta-G solvation = -23411.063123 eV Core-core repulsion = 20005.548729 eV Total energy + Delta-G solvation = -3405.514394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.81170 -40.85810 -37.60822 -37.18939 -35.78600 -34.85766 -32.93911 -31.70644 -30.72620 -28.43661 -27.56824 -27.12830 -25.82111 -23.04663 -22.51682 -21.76344 -20.97697 -20.27499 -18.87792 -18.37555 -18.11459 -17.17064 -16.62608 -16.34783 -15.99843 -15.91013 -15.72111 -15.61138 -14.87132 -14.77206 -14.65860 -14.06297 -13.76272 -13.64782 -13.57314 -13.48226 -13.32462 -12.98150 -12.75216 -12.63756 -12.51862 -12.05866 -11.97371 -11.82715 -11.66914 -11.60881 -11.29785 -11.28204 -10.85471 -10.57064 -9.78082 -9.68455 -8.99774 -8.22455 -6.32309 0.58171 1.06728 1.37780 1.40249 1.46502 1.51165 1.85498 2.03840 2.39043 3.00035 3.11789 3.51570 3.70162 3.95417 4.02065 4.07600 4.17648 4.25477 4.33291 4.38224 4.39679 4.58036 4.60489 4.62639 4.78905 4.84959 4.92536 5.04118 5.06337 5.11369 5.21546 5.28876 5.46430 5.46837 5.64775 5.66495 5.80165 5.97269 6.01155 6.19883 6.21748 6.46444 6.72054 6.83613 7.00210 7.37056 8.88293 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.003368 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.049721 B = 8310.540651 C = 9114.806780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.386 5.386 3 N -0.300 5.300 4 C 0.051 3.949 5 C -0.280 4.280 6 C 0.309 3.691 7 N -0.643 5.643 8 C 0.532 3.468 9 O -0.519 6.519 10 C 0.092 3.908 11 H 0.116 0.884 12 N -0.827 5.827 13 C -0.123 4.123 14 C 0.030 3.970 15 C -0.544 4.544 16 H 0.054 0.946 17 C 0.007 3.993 18 N -0.925 5.925 19 Si 0.956 3.044 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.278 1.278 23 C -0.017 4.017 24 C -0.110 4.110 25 C -0.027 4.027 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.425 0.575 30 H 0.356 0.644 31 H 0.346 0.654 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.005 0.995 35 H 0.005 0.995 36 H 0.264 0.736 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.472 18.104 5.568 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.174 5.174 3 N -0.124 5.124 4 C -0.116 4.116 5 C -0.294 4.294 6 C 0.089 3.911 7 N -0.294 5.294 8 C 0.319 3.681 9 O -0.391 6.391 10 C -0.023 4.023 11 H 0.134 0.866 12 N -0.360 5.360 13 C -0.162 4.162 14 C -0.008 4.008 15 C -0.582 4.582 16 H 0.072 0.928 17 C -0.192 4.192 18 N -0.565 5.565 19 Si 0.782 3.218 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.203 1.203 23 C -0.056 4.056 24 C -0.148 4.148 25 C -0.066 4.066 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.263 0.737 30 H 0.172 0.828 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.537 19.454 5.846 21.340 hybrid contribution -1.674 -1.991 -1.298 2.907 sum 4.863 17.463 4.548 18.689 Atomic orbital electron populations 1.22210 0.71805 1.06046 1.04966 1.48808 1.07455 1.01028 1.60080 1.77049 1.01032 1.05682 1.28598 1.23712 0.94986 0.94850 0.98025 1.20621 0.94368 0.95452 1.18982 1.17207 0.90242 0.81103 1.02531 1.42835 1.23402 1.02321 1.60889 1.21025 0.82949 0.87544 0.76591 1.90690 1.24558 1.83004 1.40853 1.21323 0.91461 0.87846 1.01691 0.86610 1.58731 1.27617 1.10931 1.38690 1.22176 0.97594 0.99344 0.97126 1.18975 0.94940 0.91014 0.95829 1.21639 1.23467 0.98668 1.14382 0.92754 1.25823 0.98982 0.96394 0.97996 1.70053 1.44268 1.05723 1.36479 0.85531 0.78898 0.78221 0.79196 1.19061 1.20692 1.20333 1.20200 0.87589 0.97201 1.00587 1.22417 0.98298 0.91884 1.02164 1.20670 0.83095 0.98939 1.03852 0.88628 0.87730 0.88589 0.73687 0.82780 0.84084 0.91407 0.93519 0.97704 0.97638 0.92740 0.93629 0.92101 0.90172 0.88003 0.88347 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 11.29 127.77 1.44 2.87 16 2 N -0.39 -9.99 4.02 -366.38 -1.47 -11.47 16 3 N -0.30 -8.71 12.57 -46.84 -0.59 -9.30 16 4 C 0.05 1.39 8.09 43.23 0.35 1.74 16 5 C -0.28 -8.41 5.84 -19.79 -0.12 -8.52 16 6 C 0.31 8.87 7.45 131.37 0.98 9.85 16 7 N -0.64 -16.56 5.34 -308.51 -1.65 -18.21 16 8 C 0.53 16.30 6.98 87.66 0.61 16.91 16 9 O -0.52 -18.59 12.47 -3.05 -0.04 -18.63 16 10 C 0.09 2.81 3.21 44.17 0.14 2.95 16 11 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 12 N -0.83 -26.03 8.94 -171.79 -1.54 -27.56 16 13 C -0.12 -4.40 4.78 30.60 0.15 -4.25 16 14 C 0.03 1.37 4.74 29.85 0.14 1.51 16 15 C -0.54 -28.73 9.11 25.60 0.23 -28.49 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 17 C 0.01 0.36 5.46 84.65 0.46 0.82 16 18 N -0.93 -52.79 13.29 21.45 0.28 -52.51 16 19 Si 0.96 42.33 29.54 68.60 2.03 44.35 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 C -0.02 -0.47 4.93 30.49 0.15 -0.32 16 24 C -0.11 -1.97 7.06 31.51 0.22 -1.75 16 25 C -0.03 -0.49 6.77 30.51 0.21 -0.29 16 26 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.42 8.24 8.71 -92.70 -0.81 7.43 16 30 H 0.36 11.40 7.55 -89.69 -0.68 10.73 16 31 H 0.35 11.11 8.58 -89.69 -0.77 10.34 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.00 0.23 6.87 -2.39 -0.02 0.21 16 35 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.04 1.33 8.07 -2.39 -0.02 1.31 16 38 H 0.06 1.85 7.30 -2.39 -0.02 1.83 16 39 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -69.66 345.86 0.81 -68.85 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -1.19 Total: 31.42 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 4.97 Total: -6.95 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -4.96 Total: -119.04 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.04 Total: -18.63 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -69.66 0.81 -68.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424140763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.718 kcal (2) G-P(sol) polarization free energy of solvation -69.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds