Wall clock time and date at job start Tue Mar 31 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47193 * 2 1 4 4 N 1.46498 * 109.47099 * 120.00415 * 2 1 3 5 5 C 1.46496 * 119.99606 * 305.15282 * 4 2 1 6 6 C 1.50698 * 109.47118 * 269.99647 * 5 4 2 7 7 H 1.08001 * 120.00121 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00098 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00232 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99911 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47405 * 89.99840 * 10 8 6 12 12 H 1.48503 * 109.47128 * 209.99662 * 10 8 6 13 13 H 1.48498 * 109.47092 * 329.99916 * 10 8 6 14 14 C 1.34775 * 119.99735 * 125.15497 * 4 2 1 15 15 O 1.21286 * 119.99649 * 185.52055 * 14 4 2 16 16 C 1.50699 * 120.00471 * 5.51670 * 14 4 2 17 17 H 1.09000 * 109.44960 * 25.35910 * 16 14 4 18 18 C 1.53137 * 109.45234 * 145.29779 * 16 14 4 19 19 C 1.53359 * 109.40013 * 189.36518 * 18 16 14 20 20 C 1.50803 * 108.18894 * 311.53094 * 19 18 16 21 21 N 1.29841 * 128.52672 * 195.83724 * 20 19 18 22 22 N 1.28910 * 109.47961 * 179.64289 * 21 20 19 23 23 C 1.30842 * 109.73856 * 0.02562 * 22 21 20 24 24 N 1.34689 * 107.06998 * 0.04554 * 23 22 21 25 25 C 1.46259 * 128.84043 * 179.83263 * 24 23 22 26 26 H 1.08997 * 109.46993 * 300.00095 * 1 2 3 27 27 H 1.09004 * 109.47071 * 59.99845 * 1 2 3 28 28 H 1.08996 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47031 * 240.00526 * 2 1 3 30 30 H 1.09001 * 109.46990 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46824 * 300.00102 * 3 2 1 32 32 H 1.08996 * 109.46719 * 60.00175 * 3 2 1 33 33 H 1.08996 * 109.47545 * 30.00446 * 5 4 2 34 34 H 1.09004 * 109.47092 * 150.00328 * 5 4 2 35 35 H 0.97001 * 120.00409 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.50199 * 309.42289 * 18 16 14 37 37 H 1.08998 * 109.50662 * 69.49353 * 18 16 14 38 38 H 1.09002 * 109.77187 * 191.82141 * 19 18 16 39 39 H 1.08995 * 109.64207 * 71.17044 * 19 18 16 40 40 H 1.07999 * 126.45847 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.60221 * 316.86193 * 25 24 23 42 42 H 1.09004 * 109.59406 * 77.17015 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5738 -0.2594 2.5237 6 6 2.5166 0.7904 3.0527 7 1 3.3622 1.1053 2.4591 8 6 2.2998 1.3491 4.2944 9 7 3.1223 2.2657 4.7559 10 14 0.8377 0.8041 5.3213 11 1 1.2351 -0.3402 6.1804 12 1 0.3855 1.9311 6.1762 13 1 -0.2699 0.3881 4.4240 14 6 2.8766 -1.7228 1.0750 15 8 3.2029 -2.3582 2.0552 16 6 3.4308 -2.0873 -0.2781 17 1 3.4170 -1.2097 -0.9244 18 6 4.8713 -2.5832 -0.1226 19 6 5.5116 -2.7309 -1.5082 20 6 4.5567 -3.4970 -2.3888 21 7 4.7949 -4.0819 -3.5233 22 7 3.7144 -4.6352 -3.9569 23 6 2.7391 -4.4229 -3.1109 24 7 3.2463 -3.6958 -2.0970 25 6 2.5709 -3.1934 -0.9010 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 0.5690 0.1570 2.4529 34 1 1.5659 -1.1144 3.1998 35 1 2.9695 2.6590 5.6293 36 1 5.4413 -1.8658 0.4679 37 1 4.8710 -3.5500 0.3808 38 1 6.4519 -3.2758 -1.4237 39 1 5.6943 -1.7445 -1.9344 40 1 1.7195 -4.7658 -3.2078 41 1 1.5964 -2.7888 -1.1741 42 1 2.4421 -4.0056 -0.1855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519550378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:23 Heat of formation + Delta-G solvation = 43.757785 kcal Electronic energy + Delta-G solvation = -24421.963571 eV Core-core repulsion = 21017.571931 eV Total energy + Delta-G solvation = -3404.391641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.40491 -40.00375 -37.03856 -36.18121 -33.77301 -32.89489 -31.33072 -31.17738 -29.39225 -28.06279 -26.98175 -25.12552 -23.71251 -22.40440 -22.27101 -21.55815 -19.86147 -18.23410 -17.47585 -17.21012 -16.97199 -16.31048 -15.59202 -15.35271 -14.62363 -14.46645 -14.33797 -14.23523 -13.97089 -13.75968 -13.45300 -12.74958 -12.67686 -12.39363 -12.24285 -12.00128 -11.78199 -11.74065 -11.57012 -11.33719 -11.18713 -11.11229 -10.98248 -10.61588 -10.52198 -10.43490 -10.26709 -10.21480 -9.60379 -9.28039 -9.25145 -8.68087 -7.93362 -6.18403 -4.17304 1.71226 2.26550 2.77364 2.95473 3.20102 3.25811 3.28643 3.46677 4.03017 4.27868 4.30005 4.30174 4.35695 4.55277 4.83372 4.86377 4.93746 5.00955 5.12405 5.14955 5.26046 5.31196 5.36666 5.45240 5.55518 5.76682 5.82127 5.85387 5.91763 5.98561 6.05494 6.08160 6.15261 6.33159 6.61078 6.70282 6.80925 6.84316 7.13935 7.49512 8.01456 8.34656 8.61500 8.66994 8.85101 9.41412 10.94449 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.004346 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.855967 B = 6440.493031 C = 6716.826594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 C -0.160 4.160 4 N -0.582 5.582 5 C 0.213 3.787 6 C -0.528 4.528 7 H 0.077 0.923 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.267 1.267 14 C 0.518 3.482 15 O -0.532 6.532 16 C -0.126 4.126 17 H 0.104 0.896 18 C -0.108 4.108 19 C -0.035 4.035 20 C 0.183 3.817 21 N -0.296 5.296 22 N -0.304 5.304 23 C 0.152 3.848 24 N -0.469 5.469 25 C 0.117 3.883 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.265 0.735 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.218 0.782 41 H 0.101 0.899 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.058 -7.114 -12.584 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.025 3.975 3 C -0.218 4.218 4 N -0.313 5.313 5 C 0.093 3.907 6 C -0.566 4.566 7 H 0.095 0.905 8 C -0.129 4.129 9 N -0.533 5.533 10 Si 0.699 3.301 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.303 3.697 15 O -0.408 6.408 16 C -0.148 4.148 17 H 0.122 0.878 18 C -0.146 4.146 19 C -0.074 4.074 20 C -0.085 4.085 21 N -0.136 5.136 22 N -0.144 5.144 23 C -0.136 4.136 24 N -0.160 5.160 25 C -0.006 4.006 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.234 0.766 41 H 0.119 0.881 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.168 -7.816 -13.102 15.582 hybrid contribution -1.640 0.390 1.762 2.439 sum -4.808 -7.426 -11.340 14.383 Atomic orbital electron populations 1.22172 0.95146 1.01873 1.02913 1.21124 0.94365 0.94512 0.87453 1.22181 1.01626 0.95287 1.02752 1.48067 1.44093 1.30748 1.08398 1.19704 0.95748 0.96116 0.79129 1.21298 1.12014 1.20457 1.02822 0.90453 1.24839 0.96199 0.94642 0.97191 1.69880 1.37004 1.27352 1.19062 0.86915 0.83376 0.78715 0.81059 1.19930 1.21061 1.19140 1.19756 0.79708 0.81085 0.89152 1.90704 1.58739 1.52032 1.39338 1.21752 0.96913 0.98901 0.97267 0.87819 1.21550 0.93077 1.04016 0.96002 1.20289 0.95831 0.99532 0.91763 1.24898 0.84722 1.02502 0.96385 1.74065 1.19336 1.11941 1.08260 1.74467 0.95780 1.19870 1.24235 1.26243 1.02265 0.98506 0.86606 1.46184 1.10191 1.40424 1.19229 1.21930 0.96083 0.98018 0.84583 0.91124 0.91801 0.92852 0.90681 0.92515 0.93037 0.89669 0.94833 0.94517 0.92495 0.88687 0.89958 0.87744 0.88458 0.76550 0.88123 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.07 37.16 0.34 -1.59 16 2 C 0.13 1.75 2.98 -67.93 -0.20 1.55 16 3 C -0.16 -2.36 8.61 37.16 0.32 -2.04 16 4 N -0.58 -10.24 2.39 -167.47 -0.40 -10.64 16 5 C 0.21 4.67 3.84 -5.20 -0.02 4.65 16 6 C -0.53 -13.78 8.41 -34.44 -0.29 -14.07 16 7 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 8 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 9 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 10 Si 0.87 20.38 27.47 -169.99 -4.67 15.72 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 14 C 0.52 8.85 6.63 -10.99 -0.07 8.78 16 15 O -0.53 -11.34 15.99 5.55 0.09 -11.25 16 16 C -0.13 -1.53 1.72 -91.54 -0.16 -1.68 16 17 H 0.10 1.14 6.11 -51.93 -0.32 0.83 16 18 C -0.11 -1.26 4.77 -26.47 -0.13 -1.39 16 19 C -0.03 -0.35 6.33 -27.65 -0.18 -0.53 16 20 C 0.18 2.30 7.75 -155.30 -1.20 1.09 16 21 N -0.30 -4.48 12.21 32.76 0.40 -4.08 16 22 N -0.30 -4.41 12.23 29.58 0.36 -4.04 16 23 C 0.15 1.63 12.83 -90.41 -1.16 0.47 16 24 N -0.47 -5.16 3.11 -115.52 -0.36 -5.52 16 25 C 0.12 1.16 6.24 -4.01 -0.02 1.13 16 26 H 0.07 0.97 6.52 -51.93 -0.34 0.64 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.81 5.17 -51.93 -0.27 0.54 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.53 6.93 -51.93 -0.36 1.17 16 33 H 0.03 0.71 5.23 -51.93 -0.27 0.44 16 34 H 0.04 0.88 6.78 -51.93 -0.35 0.53 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.09 1.19 8.12 -51.93 -0.42 0.76 16 37 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.22 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.10 0.78 7.89 -51.93 -0.41 0.37 16 42 H 0.10 1.01 8.12 -51.93 -0.42 0.59 16 LS Contribution 334.76 15.07 5.04 5.04 Total: -1.00 -33.77 334.76 -7.75 -41.52 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.12 Total: 0.36 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.87 Total: -1.70 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.78 Total: -49.69 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.72 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.77 -7.75 -41.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519550378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.278 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds