Wall clock time and date at job start Tue Mar 31 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47193 * 2 1 4 4 N 1.46498 * 109.47099 * 120.00415 * 2 1 3 5 5 C 1.46496 * 119.99606 * 305.15282 * 4 2 1 6 6 C 1.50698 * 109.47118 * 269.99647 * 5 4 2 7 7 H 1.08001 * 120.00121 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00098 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00232 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99911 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47405 * 89.99840 * 10 8 6 12 12 H 1.48503 * 109.47128 * 209.99662 * 10 8 6 13 13 H 1.48498 * 109.47092 * 329.99916 * 10 8 6 14 14 C 1.34775 * 119.99735 * 125.15497 * 4 2 1 15 15 O 1.21286 * 119.99649 * 185.52055 * 14 4 2 16 16 C 1.50699 * 120.00471 * 5.51670 * 14 4 2 17 17 H 1.09000 * 109.44960 * 25.35910 * 16 14 4 18 18 C 1.53137 * 109.45234 * 145.29779 * 16 14 4 19 19 C 1.53359 * 109.40013 * 189.36518 * 18 16 14 20 20 C 1.50803 * 108.18894 * 311.53094 * 19 18 16 21 21 N 1.29841 * 128.52672 * 195.83724 * 20 19 18 22 22 N 1.28910 * 109.47961 * 179.64289 * 21 20 19 23 23 C 1.30842 * 109.73856 * 0.02562 * 22 21 20 24 24 N 1.34689 * 107.06998 * 0.04554 * 23 22 21 25 25 C 1.46259 * 128.84043 * 179.83263 * 24 23 22 26 26 H 1.08997 * 109.46993 * 300.00095 * 1 2 3 27 27 H 1.09004 * 109.47071 * 59.99845 * 1 2 3 28 28 H 1.08996 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47031 * 240.00526 * 2 1 3 30 30 H 1.09001 * 109.46990 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46824 * 300.00102 * 3 2 1 32 32 H 1.08996 * 109.46719 * 60.00175 * 3 2 1 33 33 H 1.08996 * 109.47545 * 30.00446 * 5 4 2 34 34 H 1.09004 * 109.47092 * 150.00328 * 5 4 2 35 35 H 0.97001 * 120.00409 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.50199 * 309.42289 * 18 16 14 37 37 H 1.08998 * 109.50662 * 69.49353 * 18 16 14 38 38 H 1.09002 * 109.77187 * 191.82141 * 19 18 16 39 39 H 1.08995 * 109.64207 * 71.17044 * 19 18 16 40 40 H 1.07999 * 126.45847 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.60221 * 316.86193 * 25 24 23 42 42 H 1.09004 * 109.59406 * 77.17015 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5738 -0.2594 2.5237 6 6 2.5166 0.7904 3.0527 7 1 3.3622 1.1053 2.4591 8 6 2.2998 1.3491 4.2944 9 7 3.1223 2.2657 4.7559 10 14 0.8377 0.8041 5.3213 11 1 1.2351 -0.3402 6.1804 12 1 0.3855 1.9311 6.1762 13 1 -0.2699 0.3881 4.4240 14 6 2.8766 -1.7228 1.0750 15 8 3.2029 -2.3582 2.0552 16 6 3.4308 -2.0873 -0.2781 17 1 3.4170 -1.2097 -0.9244 18 6 4.8713 -2.5832 -0.1226 19 6 5.5116 -2.7309 -1.5082 20 6 4.5567 -3.4970 -2.3888 21 7 4.7949 -4.0819 -3.5233 22 7 3.7144 -4.6352 -3.9569 23 6 2.7391 -4.4229 -3.1109 24 7 3.2463 -3.6958 -2.0970 25 6 2.5709 -3.1934 -0.9010 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 0.5690 0.1570 2.4529 34 1 1.5659 -1.1144 3.1998 35 1 2.9695 2.6590 5.6293 36 1 5.4413 -1.8658 0.4679 37 1 4.8710 -3.5500 0.3808 38 1 6.4519 -3.2758 -1.4237 39 1 5.6943 -1.7445 -1.9344 40 1 1.7195 -4.7658 -3.2078 41 1 1.5964 -2.7888 -1.1741 42 1 2.4421 -4.0056 -0.1855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519550378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:22 Heat of formation + Delta-G solvation = 23.011040 kcal Electronic energy + Delta-G solvation = -24422.863218 eV Core-core repulsion = 21017.571931 eV Total energy + Delta-G solvation = -3405.291287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.30651 -41.30509 -38.13336 -37.48594 -34.86534 -34.65649 -32.61694 -32.36140 -30.43915 -29.62185 -28.04875 -26.15618 -24.94421 -23.75860 -23.27595 -22.74044 -20.90028 -19.43374 -19.03835 -18.63009 -18.10426 -17.30751 -16.94492 -16.45817 -16.14675 -15.56865 -15.39450 -15.28982 -14.98916 -14.95869 -14.66147 -14.51486 -13.89526 -13.63243 -13.40171 -13.31732 -13.19545 -12.86290 -12.64448 -12.59441 -12.42674 -12.31702 -12.23506 -12.10415 -11.90625 -11.70811 -11.50592 -11.37796 -11.12853 -10.78469 -10.68730 -10.19915 -9.45297 -8.29582 -6.32115 0.87029 1.33065 1.36299 1.37072 1.43844 1.68106 1.85136 2.19417 2.32547 3.04825 3.13740 3.27765 3.35986 3.48111 3.81353 3.83323 3.97046 4.06868 4.14273 4.23506 4.25614 4.33142 4.48497 4.54344 4.74125 4.74713 4.86881 4.90610 4.91775 4.92973 4.98147 5.03475 5.04890 5.08122 5.20127 5.40044 5.49136 5.58248 5.65232 5.89795 6.27446 6.65563 6.70564 7.22623 7.36306 7.70326 8.86674 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.004346 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.855967 B = 6440.493031 C = 6716.826594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 C -0.157 4.157 4 N -0.587 5.587 5 C 0.223 3.777 6 C -0.520 4.520 7 H 0.038 0.962 8 C 0.012 3.988 9 N -0.946 5.946 10 Si 0.936 3.064 11 H -0.279 1.279 12 H -0.281 1.281 13 H -0.237 1.237 14 C 0.515 3.485 15 O -0.582 6.582 16 C -0.114 4.114 17 H 0.121 0.879 18 C -0.104 4.104 19 C -0.026 4.026 20 C 0.178 3.822 21 N -0.334 5.334 22 N -0.349 5.349 23 C 0.172 3.828 24 N -0.468 5.468 25 C 0.124 3.876 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.037 0.963 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.018 0.982 35 H 0.265 0.735 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.263 0.737 41 H 0.135 0.865 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.619 -8.074 -14.527 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.022 3.978 3 C -0.215 4.215 4 N -0.317 5.317 5 C 0.100 3.900 6 C -0.559 4.559 7 H 0.056 0.944 8 C -0.185 4.185 9 N -0.586 5.586 10 Si 0.760 3.240 11 H -0.205 1.205 12 H -0.207 1.207 13 H -0.160 1.160 14 C 0.302 3.698 15 O -0.462 6.462 16 C -0.136 4.136 17 H 0.139 0.861 18 C -0.143 4.143 19 C -0.065 4.065 20 C -0.091 4.091 21 N -0.173 5.173 22 N -0.187 5.187 23 C -0.116 4.116 24 N -0.159 5.159 25 C 0.001 3.999 26 H 0.065 0.935 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.278 0.722 41 H 0.153 0.847 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.743 -8.777 -15.109 18.393 hybrid contribution -0.770 0.713 2.325 2.551 sum -6.513 -8.064 -12.784 16.458 Atomic orbital electron populations 1.22162 0.93189 1.03124 1.03272 1.21486 0.95938 0.93450 0.86893 1.22129 1.00409 0.96470 1.02507 1.48139 1.44327 1.31130 1.08113 1.19317 0.95429 0.93919 0.81296 1.21530 1.11299 1.20782 1.02278 0.94412 1.25734 0.99285 0.94782 0.98736 1.70037 1.39504 1.29356 1.19736 0.85890 0.80651 0.77967 0.79530 1.20482 1.20691 1.16009 1.20552 0.78567 0.80121 0.90553 1.90680 1.60146 1.53741 1.41604 1.21645 0.97018 1.00580 0.94347 0.86098 1.21476 0.93076 1.02981 0.96770 1.20290 0.95660 1.00329 0.90215 1.25160 0.85673 1.02251 0.96057 1.73987 1.20369 1.13247 1.09668 1.74392 0.96617 1.21598 1.26089 1.27072 1.03193 0.96358 0.85022 1.46235 1.09691 1.40479 1.19479 1.21966 0.96592 0.97212 0.84132 0.93526 0.88691 0.91151 0.86839 0.94404 0.89432 0.93666 0.93121 0.96346 0.92563 0.90094 0.91045 0.86772 0.86904 0.72153 0.84677 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.07 71.98 0.65 -2.47 16 2 C 0.12 2.98 2.98 44.99 0.13 3.12 16 3 C -0.16 -4.41 8.61 71.98 0.62 -3.79 16 4 N -0.59 -19.90 2.39 -802.14 -1.91 -21.82 16 5 C 0.22 9.69 3.84 85.63 0.33 10.02 16 6 C -0.52 -28.03 8.41 25.60 0.22 -27.81 16 7 H 0.04 2.27 7.83 -2.91 -0.02 2.25 16 8 C 0.01 0.69 5.47 84.66 0.46 1.16 16 9 N -0.95 -57.47 13.96 21.45 0.30 -57.17 16 10 Si 0.94 42.29 27.47 68.60 1.88 44.17 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 13 H -0.24 -9.47 6.54 99.48 0.65 -8.82 16 14 C 0.51 17.08 6.63 87.66 0.58 17.66 16 15 O -0.58 -25.09 15.99 -3.05 -0.05 -25.14 16 16 C -0.11 -2.49 1.72 -11.39 -0.02 -2.51 16 17 H 0.12 2.23 6.11 -2.39 -0.01 2.22 16 18 C -0.10 -2.34 4.77 30.76 0.15 -2.19 16 19 C -0.03 -0.48 6.33 30.00 0.19 -0.29 16 20 C 0.18 4.09 7.75 138.14 1.07 5.16 16 21 N -0.33 -9.63 12.21 -50.27 -0.61 -10.24 16 22 N -0.35 -9.40 12.23 -60.31 -0.74 -10.14 16 23 C 0.17 3.07 12.83 180.28 2.31 5.38 16 24 N -0.47 -8.69 3.11 -519.39 -1.62 -10.31 16 25 C 0.12 1.97 6.24 86.53 0.54 2.51 16 26 H 0.05 1.15 6.52 -2.39 -0.02 1.13 16 27 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.11 1.88 5.17 -2.38 -0.01 1.87 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 32 H 0.04 1.63 6.93 -2.39 -0.02 1.61 16 33 H 0.05 2.05 5.23 -2.39 -0.01 2.04 16 34 H 0.02 0.88 6.78 -2.39 -0.02 0.86 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 37 H 0.07 1.76 8.11 -2.39 -0.02 1.74 16 38 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.26 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.14 1.29 7.89 -2.39 -0.02 1.27 16 42 H 0.10 1.69 8.12 -2.39 -0.02 1.67 16 Total: -1.00 -78.91 334.76 5.45 -73.45 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.97 Total: 11.25 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 7.23 Total: 5.94 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -4.58 Total: -109.68 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.88 Total: 44.17 kcal Total: -78.91 5.45 -73.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519550378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.465 kcal (2) G-P(sol) polarization free energy of solvation -78.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds