Wall clock time and date at job start Tue Mar 31 2020 03:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34944 * 126.03692 * 2 1 4 4 C 1.35311 * 107.74732 * 180.02562 * 3 2 1 5 5 C 1.50706 * 126.04251 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.46886 * 90.00144 * 5 4 3 7 7 H 1.08997 * 110.64689 * 56.69753 * 6 5 4 8 8 C 1.54599 * 110.72239 * 293.54892 * 6 5 4 9 9 C 1.53994 * 105.13893 * 219.68479 * 8 6 5 10 10 N 1.47902 * 107.05674 * 358.77471 * 9 8 6 11 11 C 1.46902 * 111.00031 * 145.84504 * 10 9 8 12 12 C 1.50700 * 109.47029 * 183.36224 * 11 10 9 13 13 O 1.21292 * 120.00395 * 353.85917 * 12 11 10 14 14 N 1.34782 * 119.99753 * 173.86456 * 12 11 10 15 15 C 1.37097 * 119.99850 * 179.97438 * 14 12 11 16 16 H 1.08005 * 120.00184 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99826 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00263 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99831 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47175 * 89.99762 * 19 17 15 21 21 H 1.48502 * 109.47285 * 209.99838 * 19 17 15 22 22 H 1.48493 * 109.47280 * 329.99982 * 19 17 15 23 23 C 1.48534 * 105.82270 * 25.33166 * 10 9 8 24 24 C 1.39868 * 107.92145 * 0.26293 * 4 3 2 25 25 N 1.30837 * 108.20042 * 359.55775 * 24 4 3 26 26 H 1.08994 * 109.47583 * 89.99213 * 1 2 3 27 27 H 1.09006 * 109.46730 * 209.99537 * 1 2 3 28 28 H 1.09000 * 109.47155 * 329.99325 * 1 2 3 29 29 H 1.08005 * 126.12781 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.47106 * 330.00214 * 5 4 3 31 31 H 1.08995 * 109.47613 * 209.99906 * 5 4 3 32 32 H 1.08996 * 110.30817 * 338.60076 * 8 6 5 33 33 H 1.09000 * 110.31208 * 100.76732 * 8 6 5 34 34 H 1.08997 * 109.91813 * 118.12849 * 9 8 6 35 35 H 1.09004 * 109.91860 * 239.22581 * 9 8 6 36 36 H 1.09001 * 109.47291 * 303.36015 * 11 10 9 37 37 H 1.08997 * 109.47248 * 63.36394 * 11 10 9 38 38 H 0.96998 * 120.00359 * 359.97438 * 14 12 11 39 39 H 0.96998 * 119.99593 * 179.97438 * 18 17 15 40 40 H 1.09004 * 110.66802 * 202.35864 * 23 10 9 41 41 H 1.08998 * 110.66686 * 79.22706 * 23 10 9 42 42 H 1.08006 * 125.90140 * 179.73567 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6666 -0.0006 5 6 4.7680 1.5453 -0.0013 6 6 5.1830 1.8429 1.4410 7 1 5.3555 0.9172 1.9900 8 6 4.1161 2.7086 2.1497 9 6 4.9142 3.7157 2.9983 10 7 6.3477 3.4102 2.8000 11 6 7.1568 4.6359 2.8334 12 6 8.5965 4.2954 2.5464 13 8 8.9369 3.1356 2.4451 14 7 9.5059 5.2797 2.4023 15 6 10.8157 4.9700 2.1417 16 1 11.1190 3.9372 2.0523 17 6 11.7534 5.9847 1.9937 18 7 11.3845 7.2412 2.1030 19 14 13.5383 5.5626 1.6393 20 1 13.7484 5.4931 0.1709 21 1 14.4186 6.6102 2.2163 22 1 13.8668 4.2491 2.2490 23 6 6.4408 2.7470 1.4741 24 6 3.5347 -0.7321 -0.0070 25 7 2.2892 -1.1328 -0.0006 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.9281 2.1194 0.0004 30 1 4.5440 2.4801 -0.5152 31 1 5.5819 1.0342 -0.5154 32 1 3.5055 3.2332 1.4149 33 1 3.4892 2.0877 2.7897 34 1 4.7017 4.7318 2.6660 35 1 4.6503 3.6064 4.0502 36 1 6.7912 5.3333 2.0797 37 1 7.0815 5.0941 3.8195 38 1 9.2337 6.2072 2.4830 39 1 12.0392 7.9495 2.0000 40 1 7.3481 2.1466 1.4071 41 1 6.4059 3.4842 0.6720 42 1 4.4054 -1.3710 -0.0131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530627194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:40 Heat of formation + Delta-G solvation = 46.348038 kcal Electronic energy + Delta-G solvation = -22810.221825 eV Core-core repulsion = 19405.942506 eV Total energy + Delta-G solvation = -3404.279319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35082 -39.14801 -37.53385 -34.39148 -33.81294 -32.82686 -31.22231 -30.46214 -29.19083 -27.53524 -26.50880 -24.83670 -23.87577 -21.33029 -20.84652 -20.62461 -19.67055 -19.10343 -17.81327 -16.84862 -16.23834 -15.68692 -15.29544 -15.07554 -14.67768 -14.56619 -14.38445 -13.74621 -13.69689 -13.41905 -13.26602 -13.03826 -12.82065 -12.48272 -12.42696 -12.02073 -11.90141 -11.62671 -11.45434 -11.14223 -10.99542 -10.84084 -10.58104 -10.44407 -10.34443 -10.28662 -10.18779 -9.56401 -9.44747 -8.44137 -8.34760 -7.95805 -7.84465 -6.38756 -3.79263 1.73770 2.35467 2.69542 3.19908 3.28379 3.34619 3.95030 4.13096 4.29443 4.36110 4.64919 4.79491 4.81081 4.86093 4.94079 5.03382 5.06791 5.24872 5.29598 5.32833 5.41885 5.51944 5.64550 5.71249 5.82503 5.90124 5.91436 5.93671 6.03284 6.06364 6.20022 6.23319 6.33788 6.50675 6.57451 6.70016 6.84731 7.32670 7.38329 7.55336 7.58181 8.09889 8.65568 9.21493 9.58139 10.10271 10.79158 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034696 B = 0.002679 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.811064 B =10449.328220 C =10903.427838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.052 3.948 4 C -0.223 4.223 5 C -0.033 4.033 6 C -0.085 4.085 7 H 0.082 0.918 8 C -0.118 4.118 9 C 0.033 3.967 10 N -0.495 5.495 11 C 0.037 3.963 12 C 0.444 3.556 13 O -0.577 6.577 14 N -0.565 5.565 15 C -0.297 4.297 16 H 0.103 0.897 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C 0.044 3.956 24 C 0.053 3.947 25 N -0.302 5.302 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.170 0.830 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.105 0.895 41 H 0.036 0.964 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.232 -7.132 -3.938 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.164 5.164 3 C -0.093 4.093 4 C -0.234 4.234 5 C -0.072 4.072 6 C -0.105 4.105 7 H 0.100 0.900 8 C -0.156 4.156 9 C -0.096 4.096 10 N -0.219 5.219 11 C -0.095 4.095 12 C 0.229 3.771 13 O -0.461 6.461 14 N -0.202 5.202 15 C -0.427 4.427 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.757 3.243 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.083 4.083 24 C -0.133 4.133 25 N -0.123 5.123 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.187 0.813 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.054 0.946 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -21.642 -9.067 -3.586 23.737 hybrid contribution 0.871 1.951 -0.664 2.238 sum -20.771 -7.115 -4.251 22.363 Atomic orbital electron populations 1.21806 0.74541 1.04342 1.03144 1.48419 1.06454 1.03954 1.57585 1.22297 0.90942 0.93117 1.02940 1.20122 0.94529 0.93964 1.14784 1.19912 0.93512 0.97643 0.96143 1.22112 0.94396 0.98907 0.95048 0.90004 1.22396 0.97629 0.97218 0.98401 1.22909 0.88944 0.97328 1.00394 1.64505 1.04959 1.21879 1.30523 1.22074 0.93989 0.91637 1.01754 1.19738 0.86539 0.86393 0.84391 1.90487 1.80571 1.19344 1.55728 1.41874 1.07985 1.07911 1.62465 1.19697 0.83109 0.94901 1.44948 0.87915 1.25257 1.00481 0.94725 0.97568 1.69615 1.35668 0.98884 1.50295 0.85865 0.81698 0.78242 0.78530 1.20450 1.20970 1.19403 1.23383 0.99122 0.96802 0.89009 1.23853 0.95088 0.94792 0.99550 1.77333 1.01832 1.08302 1.24877 0.90976 0.89457 0.89623 0.81327 0.91573 0.90714 0.92047 0.91757 0.94259 0.90847 0.93602 0.89357 0.77525 0.91932 0.87668 0.94556 0.80038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 11.47 59.85 0.69 1.25 16 2 N -0.38 -3.76 4.01 -68.16 -0.27 -4.03 16 3 C 0.05 0.49 10.87 -17.23 -0.19 0.30 16 4 C -0.22 -2.38 5.01 -105.05 -0.53 -2.91 16 5 C -0.03 -0.36 5.10 -27.88 -0.14 -0.50 16 6 C -0.09 -1.09 3.08 -88.75 -0.27 -1.37 16 7 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 8 C -0.12 -1.35 5.77 -25.37 -0.15 -1.49 16 9 C 0.03 0.43 6.70 -2.75 -0.02 0.41 16 10 N -0.49 -8.57 5.11 -231.89 -1.18 -9.76 16 11 C 0.04 0.69 5.31 -4.97 -0.03 0.66 16 12 C 0.44 10.61 7.41 -10.98 -0.08 10.53 16 13 O -0.58 -15.61 13.87 5.55 0.08 -15.53 16 14 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16 15 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 16 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 19 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 C 0.04 0.73 5.03 -1.90 -0.01 0.72 16 24 C 0.05 0.60 11.96 -17.37 -0.21 0.40 16 25 N -0.30 -3.71 12.58 30.63 0.39 -3.33 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.17 1.11 8.03 -52.48 -0.42 0.69 16 30 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.60 7.61 -51.93 -0.40 0.20 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.49 7.68 -51.93 -0.40 0.09 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.78 7.98 -51.93 -0.41 0.36 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.11 2.09 6.43 -51.93 -0.33 1.76 16 41 H 0.04 0.59 7.92 -51.93 -0.41 0.18 16 42 H 0.18 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -33.43 347.96 -7.72 -41.15 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.43 Total: 8.62 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.17 Total: 0.02 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.41 Total: -55.65 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.08 Total: -15.53 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.43 -7.72 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530627194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.494 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds