Wall clock time and date at job start Tue Mar 31 2020 03:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34944 * 126.03692 * 2 1 4 4 C 1.35311 * 107.74732 * 180.02562 * 3 2 1 5 5 C 1.50706 * 126.04251 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.46886 * 90.00144 * 5 4 3 7 7 H 1.08997 * 110.64689 * 56.69753 * 6 5 4 8 8 C 1.54599 * 110.72239 * 293.54892 * 6 5 4 9 9 C 1.53994 * 105.13893 * 219.68479 * 8 6 5 10 10 N 1.47902 * 107.05674 * 358.77471 * 9 8 6 11 11 C 1.46902 * 111.00031 * 145.84504 * 10 9 8 12 12 C 1.50700 * 109.47029 * 183.36224 * 11 10 9 13 13 O 1.21292 * 120.00395 * 353.85917 * 12 11 10 14 14 N 1.34782 * 119.99753 * 173.86456 * 12 11 10 15 15 C 1.37097 * 119.99850 * 179.97438 * 14 12 11 16 16 H 1.08005 * 120.00184 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99826 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00263 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99831 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47175 * 89.99762 * 19 17 15 21 21 H 1.48502 * 109.47285 * 209.99838 * 19 17 15 22 22 H 1.48493 * 109.47280 * 329.99982 * 19 17 15 23 23 C 1.48534 * 105.82270 * 25.33166 * 10 9 8 24 24 C 1.39868 * 107.92145 * 0.26293 * 4 3 2 25 25 N 1.30837 * 108.20042 * 359.55775 * 24 4 3 26 26 H 1.08994 * 109.47583 * 89.99213 * 1 2 3 27 27 H 1.09006 * 109.46730 * 209.99537 * 1 2 3 28 28 H 1.09000 * 109.47155 * 329.99325 * 1 2 3 29 29 H 1.08005 * 126.12781 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.47106 * 330.00214 * 5 4 3 31 31 H 1.08995 * 109.47613 * 209.99906 * 5 4 3 32 32 H 1.08996 * 110.30817 * 338.60076 * 8 6 5 33 33 H 1.09000 * 110.31208 * 100.76732 * 8 6 5 34 34 H 1.08997 * 109.91813 * 118.12849 * 9 8 6 35 35 H 1.09004 * 109.91860 * 239.22581 * 9 8 6 36 36 H 1.09001 * 109.47291 * 303.36015 * 11 10 9 37 37 H 1.08997 * 109.47248 * 63.36394 * 11 10 9 38 38 H 0.96998 * 120.00359 * 359.97438 * 14 12 11 39 39 H 0.96998 * 119.99593 * 179.97438 * 18 17 15 40 40 H 1.09004 * 110.66802 * 202.35864 * 23 10 9 41 41 H 1.08998 * 110.66686 * 79.22706 * 23 10 9 42 42 H 1.08006 * 125.90140 * 179.73567 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6666 -0.0006 5 6 4.7680 1.5453 -0.0013 6 6 5.1830 1.8429 1.4410 7 1 5.3555 0.9172 1.9900 8 6 4.1161 2.7086 2.1497 9 6 4.9142 3.7157 2.9983 10 7 6.3477 3.4102 2.8000 11 6 7.1568 4.6359 2.8334 12 6 8.5965 4.2954 2.5464 13 8 8.9369 3.1356 2.4451 14 7 9.5059 5.2797 2.4023 15 6 10.8157 4.9700 2.1417 16 1 11.1190 3.9372 2.0523 17 6 11.7534 5.9847 1.9937 18 7 11.3845 7.2412 2.1030 19 14 13.5383 5.5626 1.6393 20 1 13.7484 5.4931 0.1709 21 1 14.4186 6.6102 2.2163 22 1 13.8668 4.2491 2.2490 23 6 6.4408 2.7470 1.4741 24 6 3.5347 -0.7321 -0.0070 25 7 2.2892 -1.1328 -0.0006 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.9281 2.1194 0.0004 30 1 4.5440 2.4801 -0.5152 31 1 5.5819 1.0342 -0.5154 32 1 3.5055 3.2332 1.4149 33 1 3.4892 2.0877 2.7897 34 1 4.7017 4.7318 2.6660 35 1 4.6503 3.6064 4.0502 36 1 6.7912 5.3333 2.0797 37 1 7.0815 5.0941 3.8195 38 1 9.2337 6.2072 2.4830 39 1 12.0392 7.9495 2.0000 40 1 7.3481 2.1466 1.4071 41 1 6.4059 3.4842 0.6720 42 1 4.4054 -1.3710 -0.0131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530627194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:40 Heat of formation + Delta-G solvation = 22.418415 kcal Electronic energy + Delta-G solvation = -22811.259491 eV Core-core repulsion = 19405.942506 eV Total energy + Delta-G solvation = -3405.316985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.10193 -40.62896 -39.14373 -35.98989 -35.18520 -33.69926 -33.22974 -31.53465 -30.13915 -28.58575 -27.77839 -26.22370 -25.20973 -22.21356 -21.98626 -21.47192 -20.94969 -20.57536 -19.83974 -17.82458 -17.53588 -16.82021 -16.62820 -16.31608 -16.09168 -16.05388 -15.47001 -15.31338 -14.89945 -14.50500 -14.24542 -13.97400 -13.87779 -13.60701 -13.51395 -13.22351 -13.08692 -13.05074 -12.86973 -12.69392 -12.40334 -12.23921 -12.10810 -11.94224 -11.56700 -11.46438 -11.37794 -11.25773 -10.30582 -10.22863 -9.99094 -9.25982 -9.17161 -8.45439 -5.93792 1.01556 1.38498 1.42102 1.55012 1.76646 1.88479 2.06612 2.29943 2.92456 3.21515 3.40986 3.67877 3.81178 3.90304 4.07093 4.16543 4.33992 4.36332 4.41065 4.43519 4.47290 4.53749 4.57927 4.62236 4.70504 4.72545 4.84199 4.93456 4.98318 5.03948 5.14722 5.21198 5.24788 5.41780 5.47175 5.53801 5.75425 5.92640 6.06580 6.19194 6.22737 6.62552 6.79033 7.14536 7.57781 8.14034 8.72165 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034696 B = 0.002679 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.811064 B =10449.328220 C =10903.427838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.064 3.936 4 C -0.241 4.241 5 C -0.023 4.023 6 C -0.074 4.074 7 H 0.064 0.936 8 C -0.107 4.107 9 C 0.031 3.969 10 N -0.520 5.520 11 C 0.049 3.951 12 C 0.440 3.560 13 O -0.614 6.614 14 N -0.575 5.575 15 C -0.331 4.331 16 H 0.078 0.922 17 C -0.014 4.014 18 N -0.921 5.921 19 Si 0.992 3.008 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.274 1.274 23 C 0.046 3.954 24 C 0.038 3.962 25 N -0.339 5.339 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.204 0.796 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.060 0.940 41 H 0.037 0.963 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.275 -5.826 -4.175 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.165 5.165 3 C -0.082 4.082 4 C -0.252 4.252 5 C -0.062 4.062 6 C -0.094 4.094 7 H 0.082 0.918 8 C -0.145 4.145 9 C -0.096 4.096 10 N -0.245 5.245 11 C -0.082 4.082 12 C 0.228 3.772 13 O -0.500 6.500 14 N -0.212 5.212 15 C -0.460 4.460 16 H 0.096 0.904 17 C -0.213 4.213 18 N -0.562 5.562 19 Si 0.816 3.184 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.199 1.199 23 C -0.082 4.082 24 C -0.147 4.147 25 N -0.161 5.161 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.133 0.867 29 H 0.220 0.780 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -23.723 -7.754 -3.819 25.249 hybrid contribution 1.431 1.519 -0.575 2.165 sum -22.292 -6.235 -4.393 23.561 Atomic orbital electron populations 1.22164 0.72232 1.05821 1.04457 1.48790 1.07836 1.03449 1.56431 1.22784 0.90305 0.94333 1.00809 1.20111 0.95072 0.93518 1.16537 1.19768 0.93540 0.98213 0.94630 1.21975 0.93249 0.97617 0.96528 0.91775 1.22364 0.96975 0.96585 0.98595 1.23014 0.86324 0.98854 1.01402 1.64451 1.07488 1.21593 1.30956 1.21953 0.90227 0.92735 1.03284 1.20763 0.88558 0.85498 0.82420 1.90472 1.81818 1.20946 1.56790 1.41940 1.07710 1.08432 1.63162 1.19644 0.84866 0.94231 1.47285 0.90393 1.26032 1.04142 0.94476 0.96699 1.69673 1.37079 0.99436 1.50044 0.84938 0.76840 0.77969 0.78654 1.19565 1.19527 1.19875 1.23223 0.99093 0.96919 0.88951 1.24085 0.95294 0.95644 0.99691 1.77273 1.02431 1.10057 1.26342 0.89725 0.89507 0.86690 0.77970 0.90293 0.91679 0.89349 0.90941 0.92502 0.90120 0.91413 0.87532 0.77054 0.91328 0.92158 0.94506 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.47 127.77 1.47 2.23 16 2 N -0.38 -6.68 4.01 -369.57 -1.48 -8.16 16 3 C 0.06 1.01 10.87 83.54 0.91 1.91 16 4 C -0.24 -4.80 5.01 -20.14 -0.10 -4.90 16 5 C -0.02 -0.46 5.10 29.85 0.15 -0.31 16 6 C -0.07 -1.84 3.08 -9.59 -0.03 -1.87 16 7 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 8 C -0.11 -2.11 5.77 31.47 0.18 -1.93 16 9 C 0.03 0.74 6.70 86.45 0.58 1.32 16 10 N -0.52 -17.60 5.11 -887.56 -4.54 -22.14 16 11 C 0.05 1.78 5.31 85.56 0.45 2.24 16 12 C 0.44 21.50 7.41 87.66 0.65 22.15 16 13 O -0.61 -34.67 13.87 -3.07 -0.04 -34.71 16 14 N -0.57 -30.05 5.29 -306.97 -1.62 -31.67 16 15 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 16 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 17 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 18 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 19 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.05 1.53 5.03 86.65 0.44 1.97 16 24 C 0.04 0.85 11.96 85.24 1.02 1.87 16 25 N -0.34 -8.11 12.58 -57.02 -0.72 -8.83 16 26 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.20 1.65 8.03 -2.91 -0.02 1.63 16 30 H 0.08 1.43 8.07 -2.39 -0.02 1.41 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.29 7.61 -2.39 -0.02 1.27 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.18 7.68 -2.39 -0.02 1.16 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.15 7.98 -2.39 -0.02 2.13 16 37 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 38 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 39 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 40 H 0.06 2.55 6.43 -2.38 -0.02 2.53 16 41 H 0.04 1.20 7.92 -2.39 -0.02 1.18 16 42 H 0.19 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -74.40 347.96 1.19 -73.21 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.29 Total: 30.54 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 7.00 Total: 6.18 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -8.08 Total: -120.66 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.04 Total: -34.71 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -74.40 1.19 -73.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530627194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.631 kcal (2) G-P(sol) polarization free energy of solvation -74.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds