Wall clock time and date at job start Tue Mar 31 2020 03:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47126 * 2 1 4 4 C 1.35035 * 124.88652 * 124.98068 * 3 2 1 5 5 C 1.35371 * 107.22677 * 179.72348 * 4 3 2 6 6 C 1.41498 * 105.50340 * 0.41041 * 5 4 3 7 7 C 1.47716 * 126.51609 * 179.84930 * 6 5 4 8 8 O 1.21567 * 120.00158 * 359.70961 * 7 6 5 9 9 N 1.34778 * 119.99597 * 179.71319 * 7 6 5 10 10 C 1.46505 * 119.99485 * 179.97438 * 9 7 6 11 11 C 1.53076 * 109.45150 * 84.78885 * 10 9 7 12 12 C 1.53183 * 109.29478 * 181.24130 * 11 10 9 13 13 N 1.46930 * 108.89468 * 305.57480 * 12 11 10 14 14 C 1.36937 * 120.63259 * 233.51494 * 13 12 11 15 15 H 1.08000 * 119.99761 * 151.83401 * 14 13 12 16 16 C 1.38806 * 120.00219 * 331.83653 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.07619 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07294 * 16 14 13 19 19 H 1.48506 * 109.46812 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47258 * 119.99807 * 18 16 14 21 21 H 1.48499 * 109.47344 * 240.00342 * 18 16 14 22 22 C 1.46925 * 118.73328 * 53.53726 * 13 12 11 23 23 C 1.53033 * 109.45770 * 204.99541 * 10 9 7 24 24 N 1.28470 * 124.88504 * 304.97053 * 3 2 1 25 25 H 1.09006 * 109.47432 * 300.00420 * 1 2 3 26 26 H 1.08996 * 109.47221 * 60.00277 * 1 2 3 27 27 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47120 * 239.99475 * 2 1 3 29 29 H 1.08997 * 109.46738 * 119.99515 * 2 1 3 30 30 H 1.07996 * 126.38471 * 359.97438 * 4 3 2 31 31 H 1.07999 * 127.24338 * 180.25505 * 5 4 3 32 32 H 0.96997 * 120.00409 * 359.97438 * 9 7 6 33 33 H 1.08990 * 109.46254 * 324.97445 * 10 9 7 34 34 H 1.09005 * 109.39190 * 61.36037 * 11 10 9 35 35 H 1.09004 * 109.62337 * 301.25830 * 11 10 9 36 36 H 1.09005 * 109.58619 * 185.72200 * 12 11 10 37 37 H 1.08998 * 109.58733 * 65.43770 * 12 11 10 38 38 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.58688 * 66.18006 * 22 13 12 40 40 H 1.08996 * 109.58570 * 186.45714 * 22 13 12 41 41 H 1.09003 * 109.49897 * 58.66679 * 23 10 9 42 42 H 1.09004 * 109.50093 * 298.57148 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8745 1.8976 0.9076 5 6 3.0873 3.1905 0.5675 6 6 2.3006 3.4123 -0.5875 7 6 2.1863 4.6759 -1.3439 8 8 2.8031 5.6590 -0.9819 9 7 1.3980 4.7390 -2.4353 10 6 1.2842 5.9925 -3.1851 11 6 2.4375 6.0939 -4.1867 12 6 2.3326 7.4196 -4.9468 13 7 0.9962 7.5182 -5.5494 14 6 0.8510 7.7660 -6.8883 15 1 -0.0217 7.4056 -7.4126 16 6 1.8255 8.4802 -7.5716 17 7 2.7044 9.1981 -6.9048 18 14 1.8896 8.4227 -9.4376 19 1 0.7990 7.5510 -9.9437 20 1 1.7193 9.7940 -9.9813 21 1 3.2011 7.8776 -9.8713 22 6 -0.1815 7.3463 -4.6878 23 6 -0.0507 6.0198 -3.9328 24 7 1.6938 2.2752 -0.8636 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.3114 1.3754 1.7458 31 1 3.7218 3.9034 1.0731 32 1 0.9061 3.9546 -2.7244 33 1 1.3310 6.8343 -2.4945 34 1 2.3786 5.2645 -4.8916 35 1 3.3884 6.0534 -3.6553 36 1 3.0899 7.4526 -5.7302 37 1 2.4844 8.2495 -4.2567 38 1 3.3851 9.6975 -7.3823 39 1 -0.2357 8.1689 -3.9746 40 1 -1.0833 7.3335 -5.2999 41 1 -0.8694 5.9251 -3.2193 42 1 -0.0879 5.1926 -4.6416 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592590807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:13 Heat of formation + Delta-G solvation = 36.970745 kcal Electronic energy + Delta-G solvation = -23234.022129 eV Core-core repulsion = 19829.336180 eV Total energy + Delta-G solvation = -3404.685949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.59774 -40.79148 -38.90401 -36.03629 -35.45353 -33.94162 -32.03850 -31.64714 -31.30728 -30.58096 -27.19268 -25.69643 -23.95972 -23.84915 -22.78757 -22.28453 -21.23184 -20.64126 -19.03770 -18.54916 -17.58333 -17.19847 -17.00675 -16.64239 -15.90300 -15.58213 -15.36779 -15.31090 -15.09340 -14.77537 -14.54414 -14.25830 -14.19261 -13.95229 -13.27762 -13.20422 -13.04013 -12.95057 -12.68079 -12.59200 -12.29576 -12.14699 -12.02931 -11.88333 -11.81189 -11.56264 -11.47318 -11.11634 -10.59424 -10.28819 -10.09201 -9.91059 -8.71815 -7.87272 -5.33995 0.54544 1.22648 1.47251 1.48716 1.57510 1.59874 2.19000 2.38686 2.51769 3.28367 3.34376 3.65182 3.81921 3.95288 3.99266 4.05304 4.08097 4.29288 4.31059 4.39480 4.45317 4.65022 4.74465 4.76271 4.79014 4.82729 4.87055 4.90850 5.02252 5.05336 5.11359 5.25587 5.29773 5.37019 5.44911 5.50828 5.64039 5.68841 5.93769 6.38674 6.48039 6.93938 7.13073 7.19777 7.83639 8.37089 9.20146 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028157 B = 0.003103 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.174383 B = 9021.139543 C = 9337.563958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.276 5.276 4 C 0.003 3.997 5 C -0.208 4.208 6 C -0.047 4.047 7 C 0.596 3.404 8 O -0.577 6.577 9 N -0.700 5.700 10 C 0.161 3.839 11 C -0.131 4.131 12 C 0.184 3.816 13 N -0.610 5.610 14 C -0.261 4.261 15 H 0.074 0.926 16 C -0.055 4.055 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.262 1.262 20 H -0.293 1.293 21 H -0.292 1.292 22 C 0.143 3.857 23 C -0.121 4.121 24 N -0.271 5.271 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.144 0.856 30 H 0.230 0.770 31 H 0.159 0.841 32 H 0.413 0.587 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.056 0.944 37 H -0.008 1.008 38 H 0.249 0.751 39 H 0.014 0.986 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.039 -23.651 17.084 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.066 5.066 4 C -0.140 4.140 5 C -0.237 4.237 6 C -0.205 4.205 7 C 0.382 3.618 8 O -0.455 6.455 9 N -0.350 5.350 10 C 0.056 3.944 11 C -0.171 4.171 12 C 0.058 3.942 13 N -0.333 5.333 14 C -0.391 4.391 15 H 0.092 0.908 16 C -0.250 4.250 17 N -0.584 5.584 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.220 1.220 21 H -0.219 1.219 22 C 0.017 3.983 23 C -0.161 4.161 24 N -0.109 5.109 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.161 0.839 30 H 0.246 0.754 31 H 0.177 0.823 32 H 0.249 0.751 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.010 0.990 38 H 0.059 0.941 39 H 0.032 0.968 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.313 -23.486 16.497 29.023 hybrid contribution 0.857 0.823 -0.594 1.328 sum -3.456 -22.663 15.904 27.901 Atomic orbital electron populations 1.22066 0.93177 1.04564 1.02518 1.22493 0.96702 0.74667 1.07242 1.46152 1.31564 1.11171 1.17682 1.23485 0.97525 0.94264 0.98690 1.22013 1.05174 0.98017 0.98451 1.21786 1.04914 0.92878 1.00914 1.17360 0.78593 0.85979 0.79845 1.90766 1.47408 1.37465 1.69831 1.45929 1.47056 1.14723 1.27254 1.20761 0.96010 0.85695 0.91903 1.22323 0.97556 0.99627 0.97574 1.20448 0.88061 0.91391 0.94329 1.44358 1.00875 1.82985 1.05120 1.19604 1.07184 1.27404 0.84947 0.90844 1.25898 0.99881 0.96688 1.02547 1.70216 1.20532 1.31894 1.35801 0.85161 0.77548 0.77123 0.80329 1.18616 1.21960 1.21892 1.21029 0.90409 0.94079 0.92774 1.22136 0.95171 0.99666 0.99097 1.73385 1.22519 0.98087 1.16873 0.92538 0.92974 0.87719 0.87926 0.83854 0.75368 0.82336 0.75065 0.92027 0.92249 0.93585 0.92555 0.99018 0.94146 0.96801 0.91197 0.89190 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.02 71.98 0.72 -0.45 16 2 C 0.11 0.64 7.12 86.38 0.61 1.25 16 3 N -0.28 -4.35 3.41 -347.97 -1.19 -5.53 16 4 C 0.00 0.05 11.40 83.54 0.95 1.00 16 5 C -0.21 -4.86 10.81 22.41 0.24 -4.61 16 6 C -0.05 -1.35 7.13 42.46 0.30 -1.04 16 7 C 0.60 21.18 7.79 86.75 0.68 21.86 16 8 O -0.58 -24.92 16.59 -3.93 -0.07 -24.98 16 9 N -0.70 -22.74 5.08 -445.35 -2.26 -25.00 16 10 C 0.16 6.05 2.41 45.03 0.11 6.16 16 11 C -0.13 -5.67 5.66 30.68 0.17 -5.50 16 12 C 0.18 9.70 5.30 86.36 0.46 10.16 16 13 N -0.61 -31.80 3.00 -699.11 -2.09 -33.89 16 14 C -0.26 -14.64 9.58 84.03 0.81 -13.83 16 15 H 0.07 3.93 7.89 -2.91 -0.02 3.91 16 16 C -0.06 -3.16 4.92 84.86 0.42 -2.74 16 17 N -0.94 -57.79 11.20 21.65 0.24 -57.55 16 18 Si 0.97 45.79 29.59 68.60 2.03 47.82 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 C 0.14 6.01 6.52 86.36 0.56 6.57 16 23 C -0.12 -4.09 5.55 30.67 0.17 -3.92 16 24 N -0.27 -6.46 11.36 -48.17 -0.55 -7.01 16 25 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.05 0.63 8.08 -2.39 -0.02 0.61 16 27 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.14 -0.26 8.04 -2.39 -0.02 -0.28 16 30 H 0.23 0.79 8.06 -2.91 -0.02 0.77 16 31 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 32 H 0.41 11.38 8.33 -92.71 -0.77 10.61 16 33 H 0.06 2.62 7.58 -2.39 -0.02 2.60 16 34 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 35 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.06 3.31 6.06 -2.38 -0.01 3.30 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 2.76 7.93 -2.39 -0.02 2.74 16 41 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 42 H 0.07 2.38 8.14 -2.38 -0.02 2.37 16 Total: -1.00 -78.38 347.34 2.57 -75.81 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.24 Total: 15.44 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 6.20 Total: 14.90 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -5.84 Total: -128.98 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.07 Total: -24.98 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -78.38 2.57 -75.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592590807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.784 kcal (2) G-P(sol) polarization free energy of solvation -78.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds