Wall clock time and date at job start Tue Mar 31 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.06588 * 2 1 4 4 C 1.53994 * 109.91472 * 238.79688 * 2 1 3 5 5 H 1.09003 * 110.39572 * 120.46759 * 4 2 1 6 6 C 1.50706 * 110.31207 * 358.33637 * 4 2 1 7 7 O 1.21591 * 119.99836 * 276.23747 * 6 4 2 8 8 N 1.32908 * 119.99790 * 96.24038 * 6 4 2 9 9 C 1.33305 * 119.99979 * 180.02562 * 8 6 4 10 10 C 1.40976 * 126.35770 * 359.95246 * 9 8 6 11 11 C 1.35121 * 108.24072 * 180.02562 * 10 9 8 12 12 N 1.36334 * 108.89881 * 359.75055 * 11 10 9 13 13 C 1.46505 * 125.86537 * 180.24642 * 12 11 10 14 14 C 1.50699 * 109.46766 * 275.18163 * 13 12 11 15 15 H 1.07997 * 120.00523 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99755 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99799 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46955 * 90.00344 * 18 16 14 20 20 H 1.48499 * 109.46682 * 210.00064 * 18 16 14 21 21 H 1.48494 * 109.47472 * 329.99839 * 18 16 14 22 22 N 1.37284 * 126.35673 * 179.97438 * 9 8 6 23 23 H 0.96998 * 126.34858 * 359.93453 * 22 9 8 24 24 C 1.54599 * 105.14088 * 239.42085 * 4 2 1 25 25 C 1.54938 * 102.91834 * 338.04707 * 24 4 2 26 26 N 1.47895 * 109.91626 * 121.21027 * 2 1 3 27 27 C 1.46902 * 111.00096 * 265.19267 * 26 2 1 28 28 H 1.08997 * 109.46797 * 184.45284 * 1 2 3 29 29 H 1.08998 * 109.46799 * 304.45220 * 1 2 3 30 30 H 1.08998 * 109.46942 * 64.45820 * 1 2 3 31 31 H 1.08000 * 125.88112 * 0.03813 * 10 9 8 32 32 H 1.08009 * 125.54993 * 180.02562 * 11 10 9 33 33 H 1.09000 * 109.46595 * 35.17954 * 13 12 11 34 34 H 1.08995 * 109.46740 * 155.18260 * 13 12 11 35 35 H 0.97007 * 119.99892 * 180.02562 * 17 16 14 36 36 H 1.09002 * 110.72041 * 96.40314 * 24 4 2 37 37 H 1.08997 * 110.72583 * 219.50591 * 24 4 2 38 38 H 1.09002 * 110.66678 * 155.85205 * 25 24 4 39 39 H 1.09003 * 110.66571 * 278.97193 * 25 24 4 40 40 H 1.09001 * 109.47339 * 302.73807 * 27 26 2 41 41 H 1.09001 * 109.46762 * 62.72720 * 27 26 2 42 42 H 1.08997 * 109.47736 * 182.73170 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7501 -1.2384 5 1 2.6710 -0.0905 -1.8492 6 6 0.9045 -1.2893 -2.0495 7 8 0.3953 -2.3522 -1.7504 8 7 0.4470 -0.6031 -3.0916 9 6 -0.5706 -1.0797 -3.8088 10 6 -1.2571 -2.2903 -3.5836 11 6 -2.2191 -2.4124 -4.5245 12 7 -2.1785 -1.3218 -5.3416 13 6 -3.0618 -1.0713 -6.4833 14 6 -2.5158 -1.7677 -7.7031 15 1 -1.6025 -2.3400 -7.6347 16 6 -3.1829 -1.6751 -8.9062 17 7 -4.2953 -0.9786 -8.9893 18 14 -2.5057 -2.5377 -10.4184 19 1 -3.0657 -3.9108 -10.4973 20 1 -2.8877 -1.7767 -11.6350 21 1 -1.0255 -2.6114 -10.3251 22 7 -1.1444 -0.4831 -4.9040 23 1 -0.8851 0.3640 -5.2990 24 6 2.9059 -1.9117 -0.6763 25 6 3.2681 -1.4186 0.7471 26 7 2.0338 -0.7205 1.1893 27 6 2.3212 0.2121 2.2873 28 1 -0.3633 -1.0246 0.0798 29 1 -0.3633 0.5814 0.8474 30 1 -0.3633 0.4431 -0.9272 31 1 -1.0499 -2.9982 -2.7946 32 1 -2.9108 -3.2373 -4.6121 33 1 -4.0584 -1.4535 -6.2622 34 1 -3.1172 0.0009 -6.6713 35 1 -4.7648 -0.9137 -9.8357 36 1 2.3214 -2.8306 -0.6291 37 1 3.8036 -2.0578 -1.2770 38 1 3.4889 -2.2617 1.4018 39 1 4.1098 -0.7268 0.7120 40 1 3.0411 0.9583 1.9511 41 1 1.4000 0.7080 2.5932 42 1 2.7357 -0.3379 3.1322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592765765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:25 Heat of formation + Delta-G solvation = 72.424834 kcal Electronic energy + Delta-G solvation = -23247.903175 eV Core-core repulsion = 19844.754631 eV Total energy + Delta-G solvation = -3403.148544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90583 -39.77448 -37.57858 -34.27038 -32.95267 -32.18177 -31.28993 -31.07549 -30.55780 -27.12892 -26.19014 -24.80951 -23.50603 -22.30919 -21.34612 -20.88120 -20.42202 -18.29495 -17.12825 -16.81784 -16.25372 -15.50612 -15.37578 -15.02660 -14.85186 -14.56432 -14.23717 -14.16464 -13.92871 -13.12979 -13.02707 -12.81448 -12.61769 -12.40985 -12.04519 -11.92962 -11.90292 -11.54403 -11.35810 -11.19976 -11.09054 -11.05081 -10.65169 -10.56279 -10.51786 -10.35521 -9.59201 -9.23915 -9.03896 -8.94900 -8.43531 -8.28974 -6.98599 -6.52915 -4.69053 1.64236 2.04558 2.98284 3.03892 3.12014 3.16093 3.98731 4.02824 4.21513 4.26215 4.69987 4.78326 4.84336 4.92835 5.22277 5.23717 5.27664 5.31245 5.45968 5.55310 5.70086 5.74927 5.80013 5.83319 5.86947 5.97406 6.00134 6.12297 6.20330 6.38827 6.47038 6.51801 6.54437 6.62391 6.74196 6.94640 7.08229 7.34509 7.44933 7.48592 7.60935 7.94815 8.34279 8.40923 9.01820 9.42055 10.49480 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.040113 B = 0.002899 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.859469 B = 9656.511280 C = 9914.514558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.086 3.914 3 H 0.053 0.947 4 C -0.093 4.093 5 H 0.088 0.912 6 C 0.512 3.488 7 O -0.580 6.580 8 N -0.704 5.704 9 C 0.469 3.531 10 C -0.332 4.332 11 C 0.162 3.838 12 N -0.340 5.340 13 C 0.253 3.747 14 C -0.559 4.559 15 H 0.070 0.930 16 C 0.070 3.930 17 N -0.886 5.886 18 Si 0.910 3.090 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.271 1.271 22 N -0.467 5.467 23 H 0.445 0.555 24 C -0.115 4.115 25 C 0.037 3.963 26 N -0.517 5.517 27 C 0.017 3.983 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.184 0.816 32 H 0.188 0.812 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.272 0.728 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.025 0.975 41 H 0.067 0.933 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.004 1.811 13.127 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 H 0.071 0.929 4 C -0.115 4.115 5 H 0.107 0.893 6 C 0.297 3.703 7 O -0.462 6.462 8 N -0.468 5.468 9 C 0.220 3.780 10 C -0.364 4.364 11 C 0.016 3.984 12 N -0.125 5.125 13 C 0.137 3.863 14 C -0.597 4.597 15 H 0.088 0.912 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.736 3.264 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.195 1.195 22 N -0.189 5.189 23 H 0.292 0.708 24 C -0.153 4.153 25 C -0.090 4.090 26 N -0.241 5.241 27 C -0.131 4.131 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.201 0.799 32 H 0.205 0.795 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.426 1.880 12.896 14.999 hybrid contribution 0.754 0.203 -1.296 1.513 sum 8.180 2.083 11.600 14.346 Atomic orbital electron populations 1.21884 0.93679 1.03314 1.01121 1.22155 0.96789 0.95069 0.88287 0.92931 1.21798 0.96369 0.97781 0.95520 0.89328 1.20231 0.84385 0.83316 0.82368 1.90513 1.59043 1.25313 1.71293 1.68802 1.20570 1.40251 1.17138 1.19262 0.87920 0.87513 0.83353 1.22477 1.03435 1.02878 1.07651 1.22895 0.97799 0.89098 0.88616 1.48061 1.23042 1.13811 1.27579 1.20086 0.87271 0.99578 0.79349 1.21403 1.11162 1.34044 0.93123 0.91202 1.24957 0.94534 0.94790 0.99213 1.69894 1.16034 1.38976 1.27368 0.86281 0.79541 0.79539 0.80994 1.19994 1.20714 1.19533 1.44593 1.26796 1.20029 1.27437 0.70811 1.22515 0.99145 0.99360 0.94285 1.23206 0.91086 0.98161 0.96590 1.64702 1.26397 1.26314 1.06697 1.22497 1.00550 0.95136 0.94953 0.90853 0.93545 0.91642 0.79883 0.79491 0.91313 0.93012 0.91799 0.88925 0.91275 0.90099 0.94048 0.95672 0.91464 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.37 37.16 0.31 -1.86 16 2 C 0.09 1.21 3.09 -66.64 -0.21 1.00 16 3 H 0.05 0.69 7.69 -51.93 -0.40 0.29 16 4 C -0.09 -1.43 3.45 -90.41 -0.31 -1.74 16 5 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 6 C 0.51 9.60 4.61 -11.81 -0.05 9.55 16 7 O -0.58 -12.00 11.82 5.29 0.06 -11.93 16 8 N -0.70 -13.54 10.11 -11.59 -0.12 -13.65 16 9 C 0.47 8.91 8.07 -155.19 -1.25 7.66 16 10 C -0.33 -6.07 9.51 -39.65 -0.38 -6.45 16 11 C 0.16 2.69 11.46 -16.66 -0.19 2.50 16 12 N -0.34 -6.20 3.63 -62.23 -0.23 -6.42 16 13 C 0.25 5.20 6.19 -5.19 -0.03 5.17 16 14 C -0.56 -13.15 9.39 -34.44 -0.32 -13.47 16 15 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 16 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -22.32 13.29 55.43 0.74 -21.58 16 18 Si 0.91 19.11 29.54 -169.99 -5.02 14.09 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 N -0.47 -8.20 7.37 31.32 0.23 -7.97 16 23 H 0.44 6.90 8.96 -182.56 -1.64 5.27 16 24 C -0.11 -1.57 6.56 -24.87 -0.16 -1.73 16 25 C 0.04 0.44 6.56 -1.90 -0.01 0.42 16 26 N -0.52 -6.74 5.18 -230.79 -1.20 -7.94 16 27 C 0.02 0.18 9.41 60.07 0.57 0.74 16 28 H 0.07 1.30 7.01 -51.93 -0.36 0.93 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.08 7.09 -51.93 -0.37 0.71 16 31 H 0.18 3.51 5.77 -52.49 -0.30 3.21 16 32 H 0.19 2.45 8.06 -52.48 -0.42 2.02 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 36 H 0.09 1.47 6.93 -51.93 -0.36 1.11 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.43 8.00 -51.93 -0.42 0.01 16 40 H 0.02 0.23 7.99 -51.93 -0.41 -0.18 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -28.04 343.15 -10.12 -38.15 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -7.61 Total: 8.70 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.14 Total: 3.39 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.57 Total: -57.57 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.06 Total: -11.93 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.04 -10.12 -38.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592765765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.576 kcal (2) G-P(sol) polarization free energy of solvation -28.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds