Wall clock time and date at job start Tue Mar 31 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.06588 * 2 1 4 4 C 1.53994 * 109.91472 * 238.79688 * 2 1 3 5 5 H 1.09003 * 110.39572 * 120.46759 * 4 2 1 6 6 C 1.50706 * 110.31207 * 358.33637 * 4 2 1 7 7 O 1.21591 * 119.99836 * 276.23747 * 6 4 2 8 8 N 1.32908 * 119.99790 * 96.24038 * 6 4 2 9 9 C 1.33305 * 119.99979 * 180.02562 * 8 6 4 10 10 C 1.40976 * 126.35770 * 359.95246 * 9 8 6 11 11 C 1.35121 * 108.24072 * 180.02562 * 10 9 8 12 12 N 1.36334 * 108.89881 * 359.75055 * 11 10 9 13 13 C 1.46505 * 125.86537 * 180.24642 * 12 11 10 14 14 C 1.50699 * 109.46766 * 275.18163 * 13 12 11 15 15 H 1.07997 * 120.00523 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99755 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99799 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46955 * 90.00344 * 18 16 14 20 20 H 1.48499 * 109.46682 * 210.00064 * 18 16 14 21 21 H 1.48494 * 109.47472 * 329.99839 * 18 16 14 22 22 N 1.37284 * 126.35673 * 179.97438 * 9 8 6 23 23 H 0.96998 * 126.34858 * 359.93453 * 22 9 8 24 24 C 1.54599 * 105.14088 * 239.42085 * 4 2 1 25 25 C 1.54938 * 102.91834 * 338.04707 * 24 4 2 26 26 N 1.47895 * 109.91626 * 121.21027 * 2 1 3 27 27 C 1.46902 * 111.00096 * 265.19267 * 26 2 1 28 28 H 1.08997 * 109.46797 * 184.45284 * 1 2 3 29 29 H 1.08998 * 109.46799 * 304.45220 * 1 2 3 30 30 H 1.08998 * 109.46942 * 64.45820 * 1 2 3 31 31 H 1.08000 * 125.88112 * 0.03813 * 10 9 8 32 32 H 1.08009 * 125.54993 * 180.02562 * 11 10 9 33 33 H 1.09000 * 109.46595 * 35.17954 * 13 12 11 34 34 H 1.08995 * 109.46740 * 155.18260 * 13 12 11 35 35 H 0.97007 * 119.99892 * 180.02562 * 17 16 14 36 36 H 1.09002 * 110.72041 * 96.40314 * 24 4 2 37 37 H 1.08997 * 110.72583 * 219.50591 * 24 4 2 38 38 H 1.09002 * 110.66678 * 155.85205 * 25 24 4 39 39 H 1.09003 * 110.66571 * 278.97193 * 25 24 4 40 40 H 1.09001 * 109.47339 * 302.73807 * 27 26 2 41 41 H 1.09001 * 109.46762 * 62.72720 * 27 26 2 42 42 H 1.08997 * 109.47736 * 182.73170 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7501 -1.2384 5 1 2.6710 -0.0905 -1.8492 6 6 0.9045 -1.2893 -2.0495 7 8 0.3953 -2.3522 -1.7504 8 7 0.4470 -0.6031 -3.0916 9 6 -0.5706 -1.0797 -3.8088 10 6 -1.2571 -2.2903 -3.5836 11 6 -2.2191 -2.4124 -4.5245 12 7 -2.1785 -1.3218 -5.3416 13 6 -3.0618 -1.0713 -6.4833 14 6 -2.5158 -1.7677 -7.7031 15 1 -1.6025 -2.3400 -7.6347 16 6 -3.1829 -1.6751 -8.9062 17 7 -4.2953 -0.9786 -8.9893 18 14 -2.5057 -2.5377 -10.4184 19 1 -3.0657 -3.9108 -10.4973 20 1 -2.8877 -1.7767 -11.6350 21 1 -1.0255 -2.6114 -10.3251 22 7 -1.1444 -0.4831 -4.9040 23 1 -0.8851 0.3640 -5.2990 24 6 2.9059 -1.9117 -0.6763 25 6 3.2681 -1.4186 0.7471 26 7 2.0338 -0.7205 1.1893 27 6 2.3212 0.2121 2.2873 28 1 -0.3633 -1.0246 0.0798 29 1 -0.3633 0.5814 0.8474 30 1 -0.3633 0.4431 -0.9272 31 1 -1.0499 -2.9982 -2.7946 32 1 -2.9108 -3.2373 -4.6121 33 1 -4.0584 -1.4535 -6.2622 34 1 -3.1172 0.0009 -6.6713 35 1 -4.7648 -0.9137 -9.8357 36 1 2.3214 -2.8306 -0.6291 37 1 3.8036 -2.0578 -1.2770 38 1 3.4889 -2.2617 1.4018 39 1 4.1098 -0.7268 0.7120 40 1 3.0411 0.9583 1.9511 41 1 1.4000 0.7080 2.5932 42 1 2.7357 -0.3379 3.1322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592765765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:25 Heat of formation + Delta-G solvation = 54.099165 kcal Electronic energy + Delta-G solvation = -23248.697836 eV Core-core repulsion = 19844.754631 eV Total energy + Delta-G solvation = -3403.943205 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.35459 -40.99765 -38.85110 -35.93038 -34.58667 -33.28832 -32.55968 -32.41890 -32.05293 -28.66146 -27.41780 -25.80336 -25.09785 -23.71692 -22.74617 -21.98752 -21.69119 -19.64598 -18.86882 -18.33641 -17.49607 -16.81286 -16.74718 -16.48396 -16.26654 -15.74671 -15.69476 -15.26422 -15.22963 -14.45455 -14.38125 -14.32416 -13.90877 -13.67550 -13.45852 -13.23156 -13.11070 -12.98697 -12.75075 -12.59187 -12.32891 -12.21725 -12.10547 -11.99990 -11.78905 -11.58694 -11.18992 -10.79290 -10.66568 -10.49583 -9.79795 -9.35568 -8.59673 -8.26800 -6.57246 0.19927 0.58913 1.38003 1.42024 1.50054 1.55918 2.29928 2.76010 2.87138 2.94216 3.04547 3.45813 3.76860 3.77830 3.90546 4.20271 4.30160 4.37909 4.38473 4.50109 4.52111 4.58425 4.63537 4.76245 4.82926 4.84338 4.85613 4.90161 4.96232 5.03655 5.08414 5.16807 5.26299 5.33405 5.36709 5.50410 5.69081 5.95688 5.99312 6.12912 6.17453 6.43073 6.62991 6.91189 7.16686 7.95455 8.65309 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.040113 B = 0.002899 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.859469 B = 9656.511280 C = 9914.514558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.089 3.911 3 H 0.068 0.932 4 C -0.096 4.096 5 H 0.096 0.904 6 C 0.503 3.497 7 O -0.606 6.606 8 N -0.713 5.713 9 C 0.454 3.546 10 C -0.344 4.344 11 C 0.177 3.823 12 N -0.345 5.345 13 C 0.267 3.733 14 C -0.566 4.566 15 H 0.059 0.941 16 C 0.031 3.969 17 N -0.913 5.913 18 Si 0.964 3.036 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.275 1.275 22 N -0.463 5.463 23 H 0.452 0.548 24 C -0.113 4.113 25 C 0.044 3.956 26 N -0.537 5.537 27 C 0.017 3.983 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.174 0.826 32 H 0.224 0.776 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.274 0.726 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.067 0.933 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.001 1.952 13.682 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.019 4.019 3 H 0.086 0.914 4 C -0.118 4.118 5 H 0.114 0.886 6 C 0.290 3.710 7 O -0.489 6.489 8 N -0.477 5.477 9 C 0.205 3.795 10 C -0.376 4.376 11 C 0.031 3.969 12 N -0.130 5.130 13 C 0.150 3.850 14 C -0.604 4.604 15 H 0.078 0.922 16 C -0.172 4.172 17 N -0.550 5.550 18 Si 0.789 3.211 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.200 1.200 22 N -0.185 5.185 23 H 0.300 0.700 24 C -0.152 4.152 25 C -0.083 4.083 26 N -0.262 5.262 27 C -0.131 4.131 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.191 0.809 32 H 0.240 0.760 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.435 2.032 13.462 16.016 hybrid contribution 0.441 0.155 -1.427 1.501 sum 8.877 2.187 12.035 15.114 Atomic orbital electron populations 1.21751 0.94986 1.01431 1.00891 1.22098 0.95723 0.95775 0.88347 0.91391 1.21882 0.95402 0.98680 0.95787 0.88586 1.20856 0.84962 0.82952 0.82273 1.90495 1.60127 1.26419 1.71900 1.68888 1.20792 1.40548 1.17472 1.19494 0.88219 0.88081 0.83722 1.22391 1.04296 1.02794 1.08141 1.23423 0.97359 0.89012 0.87058 1.47917 1.23158 1.14426 1.27467 1.19772 0.87481 0.98703 0.79090 1.21597 1.10686 1.33831 0.94335 0.92241 1.25595 0.94771 0.95361 1.01474 1.69957 1.16963 1.40106 1.28006 0.85450 0.78537 0.78801 0.78324 1.19450 1.20529 1.19973 1.44575 1.26555 1.20243 1.27176 0.69953 1.22494 0.99015 0.97512 0.96145 1.23217 0.91136 0.98826 0.95128 1.64665 1.27520 1.27201 1.06775 1.22560 1.01068 0.95119 0.94354 0.93787 0.91807 0.93400 0.80859 0.75963 0.90985 0.93765 0.91666 0.91698 0.89634 0.88954 0.91940 0.94485 0.91370 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 8.37 71.98 0.60 -3.45 16 2 C 0.09 2.42 3.09 45.06 0.14 2.56 16 3 H 0.07 1.63 7.69 -2.39 -0.02 1.61 16 4 C -0.10 -2.89 3.45 -10.66 -0.04 -2.92 16 5 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 6 C 0.50 19.16 4.61 87.95 0.41 19.56 16 7 O -0.61 -25.83 11.82 -4.00 -0.05 -25.87 16 8 N -0.71 -27.74 10.11 -309.88 -3.13 -30.87 16 9 C 0.45 17.39 8.07 133.82 1.08 18.47 16 10 C -0.34 -12.63 9.51 22.22 0.21 -12.42 16 11 C 0.18 5.69 11.46 83.28 0.95 6.65 16 12 N -0.34 -12.33 3.63 -350.80 -1.27 -13.60 16 13 C 0.27 10.76 6.19 85.63 0.53 11.29 16 14 C -0.57 -26.21 9.39 25.60 0.24 -25.97 16 15 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 16 C 0.03 1.45 5.46 84.66 0.46 1.91 16 17 N -0.91 -45.43 13.29 21.45 0.28 -45.15 16 18 Si 0.96 38.54 29.54 68.60 2.03 40.57 16 19 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 N -0.46 -16.20 7.37 -54.82 -0.40 -16.60 16 23 H 0.45 14.01 8.96 -213.29 -1.91 12.10 16 24 C -0.11 -3.00 6.56 31.80 0.21 -2.79 16 25 C 0.04 0.93 6.56 86.65 0.57 1.50 16 26 N -0.54 -13.02 5.18 -884.07 -4.58 -17.61 16 27 C 0.02 0.30 9.41 127.69 1.20 1.50 16 28 H 0.04 1.59 7.01 -2.39 -0.02 1.57 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.60 7.09 -2.39 -0.02 1.58 16 31 H 0.17 6.81 5.77 -2.91 -0.02 6.80 16 32 H 0.22 5.34 8.06 -2.91 -0.02 5.31 16 33 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 35 H 0.27 12.99 8.31 -92.70 -0.77 12.22 16 36 H 0.06 2.09 6.93 -2.39 -0.02 2.07 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.07 8.00 -2.39 -0.02 1.05 16 40 H 0.04 0.57 7.99 -2.39 -0.02 0.55 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -59.58 343.15 -1.45 -61.03 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -0.89 Total: 32.22 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 6.57 Total: 15.88 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -9.11 Total: -123.83 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.87 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -59.58 -1.45 -61.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592765765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.133 kcal (2) G-P(sol) polarization free energy of solvation -59.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds