Wall clock time and date at job start Tue Mar 31 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46493 * 109.47309 * 2 1 4 4 C 1.34951 * 126.03349 * 124.99822 * 3 2 1 5 5 C 1.35318 * 107.74311 * 180.02562 * 4 3 2 6 6 C 1.39865 * 107.92456 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.90392 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47127 * 125.00214 * 7 6 5 9 9 O 1.21286 * 119.99950 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00284 * 180.02562 * 8 7 6 11 11 C 1.46957 * 120.59483 * 179.97438 * 10 8 7 12 12 C 1.53378 * 108.63600 * 235.24927 * 11 10 8 13 13 N 1.46960 * 108.63441 * 310.57541 * 12 11 10 14 14 C 1.36929 * 120.59772 * 235.19929 * 13 12 11 15 15 H 1.08001 * 120.00154 * 26.80307 * 14 13 12 16 16 C 1.38818 * 120.00276 * 206.52209 * 14 13 12 17 17 N 1.31616 * 120.00013 * 217.35632 * 16 14 13 18 18 Si 1.86795 * 119.99797 * 37.35637 * 16 14 13 19 19 H 1.48497 * 109.47307 * 95.28345 * 18 16 14 20 20 H 1.48499 * 109.46918 * 215.28171 * 18 16 14 21 21 H 1.48500 * 109.47058 * 335.28197 * 18 16 14 22 22 C 1.46972 * 118.81093 * 55.48291 * 13 12 11 23 23 C 1.46973 * 120.59110 * 0.02618 * 10 8 7 24 24 N 1.30841 * 108.20234 * 0.26559 * 6 5 4 25 25 H 1.08999 * 109.47634 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47161 * 299.99797 * 1 2 3 27 27 H 1.08997 * 109.47245 * 59.99574 * 1 2 3 28 28 H 1.09006 * 109.47161 * 240.00202 * 2 1 3 29 29 H 1.09003 * 109.47102 * 120.00885 * 2 1 3 30 30 H 1.07996 * 126.12937 * 359.97043 * 4 3 2 31 31 H 1.08004 * 126.03938 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.46755 * 5.00762 * 7 6 5 33 33 H 1.08994 * 109.47420 * 245.00166 * 7 6 5 34 34 H 1.09004 * 109.60829 * 115.50719 * 11 10 8 35 35 H 1.08995 * 109.61517 * 354.99897 * 11 10 8 36 36 H 1.09001 * 109.60979 * 190.83526 * 12 11 10 37 37 H 1.08997 * 109.60544 * 70.32236 * 12 11 10 38 38 H 0.97000 * 120.00046 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.61298 * 64.25873 * 22 13 12 40 40 H 1.08995 * 109.61261 * 184.77395 * 22 13 12 41 41 H 1.08994 * 109.60538 * 244.49313 * 23 10 8 42 42 H 1.09004 * 109.60748 * 4.83428 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8731 1.9209 0.8940 5 6 3.0713 3.2136 0.5464 6 6 2.3113 3.4729 -0.5987 7 6 2.2331 4.7892 -1.3282 8 6 2.5896 4.5822 -2.7778 9 8 2.8782 3.4746 -3.1791 10 7 2.5877 5.6277 -3.6282 11 6 2.9338 5.4407 -5.0442 12 6 4.0808 6.3953 -5.3986 13 7 3.7331 7.7428 -4.9265 14 6 3.7322 8.8053 -5.7902 15 1 3.5553 8.6449 -6.8435 16 6 3.9527 10.0895 -5.3113 17 7 3.2936 11.1059 -5.8257 18 14 5.1849 10.3748 -3.9367 19 1 6.4970 10.7549 -4.5191 20 1 4.6994 11.4671 -3.0556 21 1 5.3380 9.1292 -3.1427 22 6 3.3926 7.9308 -3.5091 23 6 2.2406 6.9755 -3.1559 24 7 1.6749 2.3768 -0.9237 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 3.3184 1.4126 1.7364 31 1 3.7039 3.9205 1.0626 32 1 2.9319 5.4952 -0.8795 33 1 1.2202 5.1850 -1.2562 34 1 2.0665 5.6645 -5.6654 35 1 3.2501 4.4110 -5.2107 36 1 4.2225 6.4116 -6.4792 37 1 4.9974 6.0622 -4.9119 38 1 3.4480 12.0033 -5.4913 39 1 4.2614 7.7046 -2.8910 40 1 3.0798 8.9614 -3.3416 41 1 1.3239 7.3087 -3.6423 42 1 2.0963 6.9585 -2.0755 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593478403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:15 Heat of formation + Delta-G solvation = 82.766655 kcal Electronic energy + Delta-G solvation = -23473.266525 eV Core-core repulsion = 20070.566436 eV Total energy + Delta-G solvation = -3402.700089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24324 -39.53292 -36.95455 -34.81142 -33.87892 -32.07488 -31.35972 -30.54616 -29.74242 -28.29832 -26.83575 -23.86567 -23.19303 -23.06637 -21.17776 -21.00643 -19.67904 -18.48097 -17.16530 -17.10924 -16.21448 -15.54497 -15.44939 -15.22332 -14.72430 -14.45727 -14.25152 -14.03577 -13.69011 -13.55547 -13.14354 -12.97306 -12.76120 -12.58344 -12.44878 -12.28992 -12.13350 -11.91298 -11.73502 -11.56970 -10.98521 -10.78039 -10.50588 -10.44063 -10.33121 -10.15616 -9.48868 -9.45860 -9.16453 -8.68523 -8.56196 -8.16791 -7.00276 -6.09899 -3.28213 1.90115 2.43223 2.73989 3.01332 3.35040 3.46622 3.49366 3.53902 4.24940 4.52125 4.63891 4.66768 4.73901 4.86879 4.88444 4.93438 5.15607 5.26301 5.30098 5.43119 5.47026 5.59717 5.66120 5.67503 5.77395 5.83767 5.85604 5.95385 6.00172 6.12499 6.17176 6.30989 6.53141 6.61109 6.63362 6.78407 6.99008 7.00571 7.76936 7.84544 7.88871 8.25033 8.56899 8.88728 9.67014 10.07623 11.04541 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032535 B = 0.003397 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.408946 B = 8240.086311 C = 8644.683911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.376 5.376 4 C 0.046 3.954 5 C -0.266 4.266 6 C 0.087 3.913 7 C -0.059 4.059 8 C 0.514 3.486 9 O -0.540 6.540 10 N -0.601 5.601 11 C 0.098 3.902 12 C 0.133 3.867 13 N -0.600 5.600 14 C -0.275 4.275 15 H 0.082 0.918 16 C 0.039 3.961 17 N -0.879 5.879 18 Si 0.834 3.166 19 H -0.293 1.293 20 H -0.293 1.293 21 H -0.257 1.257 22 C 0.131 3.869 23 C 0.085 3.915 24 N -0.260 5.260 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.170 0.830 31 H 0.146 0.854 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.033 0.967 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 -17.889 15.117 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.159 5.159 4 C -0.100 4.100 5 C -0.295 4.295 6 C -0.081 4.081 7 C -0.101 4.101 8 C 0.301 3.699 9 O -0.417 6.417 10 N -0.335 5.335 11 C -0.026 4.026 12 C 0.006 3.994 13 N -0.323 5.323 14 C -0.402 4.402 15 H 0.100 0.900 16 C -0.162 4.162 17 N -0.518 5.518 18 Si 0.661 3.339 19 H -0.220 1.220 20 H -0.220 1.220 21 H -0.182 1.182 22 C 0.004 3.996 23 C -0.040 4.040 24 N -0.082 5.082 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.187 0.813 31 H 0.164 0.836 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.663 -19.002 14.042 24.084 hybrid contribution 1.461 0.855 1.401 2.197 sum -3.203 -18.148 15.444 24.044 Atomic orbital electron populations 1.22048 0.93892 1.02678 1.03651 1.21629 0.96029 0.77762 1.03507 1.48736 1.35758 1.10065 1.21315 1.22455 0.96272 0.94838 0.96396 1.21347 1.09630 0.96823 1.01724 1.21582 0.97025 0.94227 0.95245 1.20067 1.04667 0.92962 0.92412 1.20273 0.77822 0.84354 0.87439 1.90683 1.48876 1.23875 1.78266 1.47998 1.67610 1.08015 1.09843 1.22161 0.99383 1.00666 0.80394 1.21350 0.93752 0.85294 0.98994 1.44300 1.78492 1.04085 1.05449 1.18775 1.45000 0.84324 0.92069 0.90021 1.25209 0.98708 0.95208 0.97121 1.70125 1.37235 1.00127 1.44353 0.87604 0.84886 0.78179 0.83247 1.22033 1.22015 1.18166 1.21781 0.93967 0.97642 0.86187 1.22589 1.00418 0.82322 0.98631 1.77400 1.23128 0.96194 1.11432 0.90869 0.92199 0.90940 0.89874 0.88922 0.81261 0.83609 0.87090 0.87482 0.91620 0.89830 0.90816 0.95663 0.92720 0.94926 0.90425 0.90866 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 10.09 37.16 0.37 -0.87 16 2 C 0.13 1.07 7.23 -4.05 -0.03 1.04 16 3 N -0.38 -4.56 3.68 -61.37 -0.23 -4.79 16 4 C 0.05 0.48 11.45 -17.22 -0.20 0.28 16 5 C -0.27 -3.22 10.72 -40.01 -0.43 -3.65 16 6 C 0.09 1.27 6.01 -82.41 -0.50 0.77 16 7 C -0.06 -0.80 4.62 -29.03 -0.13 -0.94 16 8 C 0.51 8.93 7.69 -10.98 -0.08 8.85 16 9 O -0.54 -11.20 14.98 5.55 0.08 -11.12 16 10 N -0.60 -10.51 2.95 -172.23 -0.51 -11.02 16 11 C 0.10 1.77 6.59 -3.60 -0.02 1.75 16 12 C 0.13 2.65 6.67 -3.60 -0.02 2.62 16 13 N -0.60 -13.84 2.71 -171.79 -0.47 -14.31 16 14 C -0.27 -7.39 9.84 -15.06 -0.15 -7.54 16 15 H 0.08 2.35 8.05 -52.49 -0.42 1.93 16 16 C 0.04 1.08 4.80 -17.43 -0.08 1.00 16 17 N -0.88 -25.80 13.97 55.49 0.78 -25.02 16 18 Si 0.83 20.48 26.46 -169.99 -4.50 15.98 16 19 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.26 -5.98 4.99 56.52 0.28 -5.69 16 22 C 0.13 2.67 4.58 -3.38 -0.02 2.66 16 23 C 0.08 1.40 6.52 -3.38 -0.02 1.38 16 24 N -0.26 -4.10 11.77 33.67 0.40 -3.70 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.11 1.25 7.70 -51.93 -0.40 0.85 16 33 H 0.11 1.24 7.91 -51.93 -0.41 0.83 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.51 6.99 -51.93 -0.36 1.14 16 36 H 0.07 1.43 7.93 -51.93 -0.41 1.01 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.03 0.67 6.78 -51.93 -0.35 0.32 16 40 H 0.08 1.69 5.59 -51.93 -0.29 1.39 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.07 0.96 5.91 -51.93 -0.31 0.65 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -35.00 338.90 -7.08 -42.08 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.44 Total: -0.56 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -1.31 Total: 7.35 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.03 Total: -58.84 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.50 Total: 15.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.00 -7.08 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593478403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.851 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds